CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 253 | S253S | syn | tcC | tcT | 12446 | 10771 | 0.865419 | 26149-26151 | |
ORF3a | 253 | S253S | syn | tcC | tcA | 12446 | 1625 | 0.130564 | 26149-26151 | |
ORF3a | 253 | S253S | syn | tcC | tcG | 12446 | 50 | 0.00401735 | 26149-26151 |
Details of the mutation S253S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 253 | S253S | tcC | tcT | 10771 | 12446 | All | 0.00206 |
ORF3a | 253 | S253S | tcC | tcA | 1625 | 12446 | All | 0.000311 |
ORF3a | 253 | S253S | tcC | tcG | 50 | 12446 | All | 0.00001 |
ORF3a | 253 | S253S | tcC | tcT | 3270 | 3270 | AY.120 | 0.121575 |
ORF3a | 253 | S253S | tcC | tcT | 1780 | 2762 | AY.4 | 0.00277 |
ORF3a | 253 | S253S | tcC | tcA | 982 | 2762 | AY.4 | 0.001528 |
ORF3a | 253 | S253S | tcC | tcT | 1090 | 1417 | B.1.1.7 | 0.000976 |
ORF3a | 253 | S253S | tcC | tcA | 281 | 1417 | B.1.1.7 | 0.000252 |
ORF3a | 253 | S253S | tcC | tcG | 46 | 1417 | B.1.1.7 | 0.000041 |
ORF3a | 253 | S253S | tcC | tcT | 493 | 517 | B.1.617.2 | 0.001856 |
ORF3a | 253 | S253S | tcC | tcA | 24 | 517 | B.1.617.2 | 0.00009 |
ORF3a | 253 | S253S | tcC | tcT | 496 | 496 | B.1.177.11 | 0.842105 |
ORF3a | 253 | S253S | tcC | tcT | 466 | 470 | AY.44 | 0.002836 |
ORF3a | 253 | S253S | tcC | tcA | 4 | 470 | AY.44 | 0.000024 |
ORF3a | 253 | S253S | tcC | tcT | 290 | 291 | AY.36 | 0.042982 |
ORF3a | 253 | S253S | tcC | tcG | 1 | 291 | AY.36 | 0.000148 |
ORF3a | 253 | S253S | tcC | tcT | 242 | 242 | AY.9 | 0.016358 |
ORF3a | 253 | S253S | tcC | tcT | 173 | 176 | B.1.351 | 0.005143 |
ORF3a | 253 | S253S | tcC | tcA | 3 | 176 | B.1.351 | 0.000089 |
ORF3a | 253 | S253S | tcC | tcT | 128 | 147 | B.1.2 | 0.001127 |
ORF3a | 253 | S253S | tcC | tcA | 19 | 147 | B.1.2 | 0.000167 |
ORF3a | 253 | S253S | tcC | tcT | 141 | 143 | AY.3 | 0.001402 |
ORF3a | 253 | S253S | tcC | tcA | 2 | 143 | AY.3 | 0.00002 |
ORF3a | 253 | S253S | tcC | tcT | 127 | 127 | AY.5 | 0.002622 |
ORF3a | 253 | S253S | tcC | tcT | 114 | 124 | AY.43 | 0.000505 |
ORF3a | 253 | S253S | tcC | tcA | 10 | 124 | AY.43 | 0.000044 |
ORF3a | 253 | S253S | tcC | tcT | 102 | 115 | B.1 | 0.000934 |
ORF3a | 253 | S253S | tcC | tcA | 13 | 115 | B.1 | 0.000119 |
ORF3a | 253 | S253S | tcC | tcT | 107 | 109 | B.1.1.356 | 0.91453 |
ORF3a | 253 | S253S | tcC | tcA | 2 | 109 | B.1.1.356 | 0.017094 |
ORF3a | 253 | S253S | tcC | tcT | 98 | 98 | B.1.234 | 0.01293 |
ORF3a | 253 | S253S | tcC | tcT | 94 | 94 | AY.103 | 0.000584 |
ORF3a | 253 | S253S | tcC | tcA | 60 | 87 | B.1.429 | 0.001412 |
ORF3a | 253 | S253S | tcC | tcT | 27 | 87 | B.1.429 | 0.000635 |
ORF3a | 253 | S253S | tcC | tcT | 87 | 87 | B.1.596 | 0.007581 |
ORF3a | 253 | S253S | tcC | tcT | 42 | 70 | B.1.177 | 0.000553 |
ORF3a | 253 | S253S | tcC | tcA | 28 | 70 | B.1.177 | 0.000369 |
ORF3a | 253 | S253S | tcC | tcT | 64 | 65 | AY.46.6 | 0.004621 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 65 | AY.46.6 | 0.000072 |
ORF3a | 253 | S253S | tcC | tcT | 61 | 63 | AY.42 | 0.002454 |
ORF3a | 253 | S253S | tcC | tcA | 2 | 63 | AY.42 | 0.00008 |
ORF3a | 253 | S253S | tcC | tcT | 54 | 54 | AY.106 | 0.018084 |
ORF3a | 253 | S253S | tcC | tcT | 45 | 54 | AY.25 | 0.000271 |
ORF3a | 253 | S253S | tcC | tcA | 9 | 54 | AY.25 | 0.000054 |
ORF3a | 253 | S253S | tcC | tcT | 38 | 45 | AY.39 | 0.000939 |
ORF3a | 253 | S253S | tcC | tcA | 7 | 45 | AY.39 | 0.000173 |
ORF3a | 253 | S253S | tcC | tcT | 45 | 45 | B.1.1.519 | 0.001787 |
ORF3a | 253 | S253S | tcC | tcT | 42 | 42 | AY.33 | 0.002805 |
ORF3a | 253 | S253S | tcC | tcT | 41 | 41 | AY.121 | 0.005548 |
ORF3a | 253 | S253S | tcC | tcT | 33 | 40 | AY.20 | 0.001283 |
ORF3a | 253 | S253S | tcC | tcA | 7 | 40 | AY.20 | 0.000272 |
ORF3a | 253 | S253S | tcC | tcT | 38 | 39 | AY.26 | 0.001076 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 39 | AY.26 | 0.000028 |
ORF3a | 253 | S253S | tcC | tcT | 39 | 39 | B.1.631 | 0.131313 |
ORF3a | 253 | S253S | tcC | tcT | 33 | 35 | AY.6 | 0.001357 |
ORF3a | 253 | S253S | tcC | tcA | 2 | 35 | AY.6 | 0.000082 |
ORF3a | 253 | S253S | tcC | tcA | 32 | 33 | AY.3.1 | 0.002728 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 33 | AY.3.1 | 0.000085 |
ORF3a | 253 | S253S | tcC | tcT | 31 | 31 | B.1.279 | 0.015922 |
ORF3a | 253 | S253S | tcC | tcT | 25 | 28 | AY.102 | 0.000663 |
ORF3a | 253 | S253S | tcC | tcA | 3 | 28 | AY.102 | 0.00008 |
ORF3a | 253 | S253S | tcC | tcT | 27 | 28 | B.1.1 | 0.00049 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 28 | B.1.1 | 0.000018 |
ORF3a | 253 | S253S | tcC | tcT | 26 | 27 | AY.61 | 0.002724 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 27 | AY.61 | 0.000105 |
ORF3a | 253 | S253S | tcC | tcT | 27 | 27 | B.1.240 | 0.00582 |
ORF3a | 253 | S253S | tcC | tcA | 17 | 24 | B.1.160 | 0.00053 |
ORF3a | 253 | S253S | tcC | tcT | 7 | 24 | B.1.160 | 0.000218 |
ORF3a | 253 | S253S | tcC | tcT | 19 | 21 | B.1.427 | 0.000959 |
ORF3a | 253 | S253S | tcC | tcA | 2 | 21 | B.1.427 | 0.000101 |
ORF3a | 253 | S253S | tcC | tcT | 20 | 21 | B.1.526 | 0.00047 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 21 | B.1.526 | 0.000024 |
ORF3a | 253 | S253S | tcC | tcT | 11 | 19 | Q.8 | 0.001814 |
ORF3a | 253 | S253S | tcC | tcA | 8 | 19 | Q.8 | 0.001319 |
ORF3a | 253 | S253S | tcC | tcT | 16 | 18 | AY.29 | 0.000252 |
ORF3a | 253 | S253S | tcC | tcA | 2 | 18 | AY.29 | 0.000032 |
ORF3a | 253 | S253S | tcC | tcT | 17 | 18 | AY.4.2 | 0.000369 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 18 | AY.4.2 | 0.000022 |
ORF3a | 253 | S253S | tcC | tcT | 17 | 17 | AY.111 | 0.003114 |
ORF3a | 253 | S253S | tcC | tcT | 11 | 17 | AY.119 | 0.000388 |
ORF3a | 253 | S253S | tcC | tcA | 6 | 17 | AY.119 | 0.000212 |
ORF3a | 253 | S253S | tcC | tcT | 17 | 17 | AY.98 | 0.001343 |
ORF3a | 253 | S253S | tcC | tcT | 14 | 16 | AY.100 | 0.000644 |
ORF3a | 253 | S253S | tcC | tcA | 2 | 16 | AY.100 | 0.000092 |
ORF3a | 253 | S253S | tcC | tcA | 16 | 16 | AY.2 | 0.005698 |
ORF3a | 253 | S253S | tcC | tcT | 12 | 16 | B.1.221 | 0.000852 |
ORF3a | 253 | S253S | tcC | tcA | 4 | 16 | B.1.221 | 0.000284 |
ORF3a | 253 | S253S | tcC | tcT | 15 | 15 | B.1.1.303 | 0.041436 |
ORF3a | 253 | S253S | tcC | tcT | 15 | 15 | B.1.621 | 0.001328 |
ORF3a | 253 | S253S | tcC | tcT | 13 | 14 | AY.75 | 0.000728 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 14 | AY.75 | 0.000056 |
ORF3a | 253 | S253S | tcC | tcT | 13 | 13 | AY.10 | 0.006889 |
ORF3a | 253 | S253S | tcC | tcT | 6 | 11 | AY.75.1 | 0.001082 |
ORF3a | 253 | S253S | tcC | tcA | 5 | 11 | AY.75.1 | 0.000902 |
ORF3a | 253 | S253S | tcC | tcT | 11 | 11 | AY.9.2 | 0.000404 |
ORF3a | 253 | S253S | tcC | tcT | 11 | 11 | B.1.568 | 0.012222 |
ORF3a | 253 | S253S | tcC | tcT | 10 | 10 | AY.60 | 0.009381 |
ORF3a | 253 | S253S | tcC | tcT | 10 | 10 | B.1.177.46 | 0.009183 |
ORF3a | 253 | S253S | tcC | tcT | 10 | 10 | B.1.177.77 | 0.007262 |
ORF3a | 253 | S253S | tcC | tcT | 10 | 10 | B.1.22 | 0.013175 |
ORF3a | 253 | S253S | tcC | tcT | 10 | 10 | B.1.243 | 0.000696 |
ORF3a | 253 | S253S | tcC | tcT | 7 | 10 | B.1.36 | 0.001021 |
ORF3a | 253 | S253S | tcC | tcA | 3 | 10 | B.1.36 | 0.000438 |
ORF3a | 253 | S253S | tcC | tcT | 8 | 9 | AY.113 | 0.001139 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 9 | AY.113 | 0.000142 |
ORF3a | 253 | S253S | tcC | tcT | 9 | 9 | AY.120.2 | 0.011568 |
ORF3a | 253 | S253S | tcC | tcT | 6 | 9 | AY.14 | 0.000528 |
ORF3a | 253 | S253S | tcC | tcA | 3 | 9 | AY.14 | 0.000264 |
ORF3a | 253 | S253S | tcC | tcT | 8 | 9 | AY.46 | 0.000833 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 9 | AY.46 | 0.000104 |
ORF3a | 253 | S253S | tcC | tcT | 9 | 9 | AY.96 | 0.018672 |
ORF3a | 253 | S253S | tcC | tcT | 9 | 9 | B.1.258.17 | 0.000936 |
ORF3a | 253 | S253S | tcC | tcT | 9 | 9 | B.1.36.1 | 0.010262 |
ORF3a | 253 | S253S | tcC | tcT | 9 | 9 | B.1.438.1 | 0.000965 |
ORF3a | 253 | S253S | tcC | tcT | 8 | 8 | AY.114 | 0.001849 |
ORF3a | 253 | S253S | tcC | tcT | 6 | 8 | AY.117 | 0.000507 |
ORF3a | 253 | S253S | tcC | tcA | 2 | 8 | AY.117 | 0.000169 |
ORF3a | 253 | S253S | tcC | tcT | 8 | 8 | AY.23 | 0.000558 |
ORF3a | 253 | S253S | tcC | tcT | 8 | 8 | AY.39.1 | 0.000317 |
ORF3a | 253 | S253S | tcC | tcT | 8 | 8 | B.1.1.222 | 0.001632 |
ORF3a | 253 | S253S | tcC | tcT | 8 | 8 | C.36 | 0.007286 |
ORF3a | 253 | S253S | tcC | tcT | 6 | 7 | AY.16 | 0.002278 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 7 | AY.16 | 0.00038 |
ORF3a | 253 | S253S | tcC | tcA | 7 | 7 | B.1.409 | 0.005469 |
ORF3a | 253 | S253S | tcC | tcT | 4 | 7 | B.1.466.2 | 0.001565 |
ORF3a | 253 | S253S | tcC | tcA | 3 | 7 | B.1.466.2 | 0.001174 |
ORF3a | 253 | S253S | tcC | tcT | 7 | 7 | B.1.628 | 0.002467 |
ORF3a | 253 | S253S | tcC | tcT | 7 | 7 | B.1.637 | 0.000512 |
ORF3a | 253 | S253S | tcC | tcT | 6 | 6 | AY.108 | 0.006615 |
ORF3a | 253 | S253S | tcC | tcT | 5 | 6 | AY.47 | 0.000156 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 6 | AY.47 | 0.000031 |
ORF3a | 253 | S253S | tcC | tcT | 6 | 6 | AY.55 | 0.005505 |
ORF3a | 253 | S253S | tcC | tcT | 6 | 6 | B | 0.000767 |
ORF3a | 253 | S253S | tcC | tcA | 5 | 6 | B.1.1.348 | 0.003981 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 6 | B.1.1.348 | 0.000796 |
ORF3a | 253 | S253S | tcC | tcT | 6 | 6 | B.1.465 | 0.022814 |
ORF3a | 253 | S253S | tcC | tcT | 5 | 5 | AY.4.2.1 | 0.000745 |
ORF3a | 253 | S253S | tcC | tcT | 4 | 5 | AY.46.4 | 0.000658 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 5 | AY.46.4 | 0.000165 |
ORF3a | 253 | S253S | tcC | tcA | 4 | 5 | AY.88 | 0.003537 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 5 | AY.88 | 0.000884 |
ORF3a | 253 | S253S | tcC | tcT | 5 | 5 | AY.89 | 0.02451 |
ORF3a | 253 | S253S | tcC | tcT | 5 | 5 | AY.99.2 | 0.000461 |
ORF3a | 253 | S253S | tcC | tcT | 5 | 5 | B.1.91 | 0.010373 |
ORF3a | 253 | S253S | tcC | tcT | 5 | 5 | C.37 | 0.00058 |
ORF3a | 253 | S253S | tcC | tcT | 5 | 5 | D.2 | 0.000375 |
ORF3a | 253 | S253S | tcC | tcT | 5 | 5 | Q.1 | 0.000632 |
ORF3a | 253 | S253S | tcC | tcT | 5 | 5 | R.1 | 0.00045 |
ORF3a | 253 | S253S | tcC | tcT | 4 | 4 | A.2.5.1 | 0.019231 |
ORF3a | 253 | S253S | tcC | tcT | 4 | 4 | AY.4.5 | 0.00043 |
ORF3a | 253 | S253S | tcC | tcT | 4 | 4 | AY.46.2 | 0.002541 |
ORF3a | 253 | S253S | tcC | tcT | 4 | 4 | AY.70 | 0.000834 |
ORF3a | 253 | S253S | tcC | tcT | 4 | 4 | B.1.1.33 | 0.001684 |
ORF3a | 253 | S253S | tcC | tcA | 4 | 4 | B.1.177.35 | 0.002764 |
ORF3a | 253 | S253S | tcC | tcT | 4 | 4 | B.1.497 | 0.001259 |
ORF3a | 253 | S253S | tcC | tcT | 4 | 4 | B.1.561 | 0.001588 |
ORF3a | 253 | S253S | tcC | tcT | 3 | 3 | AY.13 | 0.000483 |
ORF3a | 253 | S253S | tcC | tcT | 3 | 3 | AY.24 | 0.001293 |
ORF3a | 253 | S253S | tcC | tcT | 3 | 3 | AY.41 | 0.000882 |
ORF3a | 253 | S253S | tcC | tcT | 3 | 3 | AY.45 | 0.000365 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 3 | AY.46.5 | 0.000397 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 3 | AY.46.5 | 0.000198 |
ORF3a | 253 | S253S | tcC | tcT | 3 | 3 | AY.56 | 0.004815 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 3 | AY.59 | 0.001059 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 3 | AY.59 | 0.00053 |
ORF3a | 253 | S253S | tcC | tcT | 3 | 3 | B.1.1.1 | 0.00098 |
ORF3a | 253 | S253S | tcC | tcA | 2 | 3 | B.1.1.25 | 0.001137 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 3 | B.1.1.25 | 0.000569 |
ORF3a | 253 | S253S | tcC | tcT | 3 | 3 | B.1.1.263 | 0.004673 |
ORF3a | 253 | S253S | tcC | tcA | 3 | 3 | B.1.110 | 0.013575 |
ORF3a | 253 | S253S | tcC | tcA | 3 | 3 | B.1.177.42 | 0.002683 |
ORF3a | 253 | S253S | tcC | tcT | 3 | 3 | B.1.177.60 | 0.000655 |
ORF3a | 253 | S253S | tcC | tcT | 3 | 3 | B.1.337 | 0.01676 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 3 | B.1.349 | 0.00143 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 3 | B.1.349 | 0.000715 |
ORF3a | 253 | S253S | tcC | tcT | 3 | 3 | B.1.588 | 0.00273 |
ORF3a | 253 | S253S | tcC | tcA | 2 | 3 | B.1.617.1 | 0.000258 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 3 | B.1.617.1 | 0.000129 |
ORF3a | 253 | S253S | tcC | tcT | 3 | 3 | C.36.3 | 0.001702 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | AY.101 | 0.000981 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | AY.115 | 0.010417 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | AY.116 | 0.000574 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | AY.16.1 | 0.00094 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | AY.29.1 | 0.000441 |
ORF3a | 253 | S253S | tcC | tcA | 2 | 2 | AY.30 | 0.000791 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | AY.32 | 0.001065 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | AY.34 | 0.000194 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | AY.37 | 0.000632 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | AY.54 | 0.000191 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | AY.58 | 0.001815 |
ORF3a | 253 | S253S | tcC | tcA | 2 | 2 | AY.62 | 0.000871 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | AY.67 | 0.000929 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | AY.69 | 0.000373 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | AY.71 | 0.00095 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | AY.74 | 0.000231 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | AY.87 | 0.001665 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | AY.92 | 0.000575 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | B.1.1.204 | 0.006079 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | B.1.1.205 | 0.007435 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | B.1.1.434 | 0.000697 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | B.1.1.448 | 0.004065 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | B.1.1.518 | 0.012658 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | B.1.160.26 | 0.004843 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | B.1.177.57 | 0.000562 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | B.1.177.75 | 0.002081 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | B.1.177.87 | 0.001456 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | B.1.36.8 | 0.002 |
ORF3a | 253 | S253S | tcC | tcA | 2 | 2 | B.1.396 | 0.001411 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | B.1.470 | 0.002809 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | B.1.525 | 0.000226 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | B.1.575 | 0.000607 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | B.1.595 | 0.000522 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | C.37.1 | 0.005236 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | P.2 | 0.000373 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | P.4 | 0.007605 |
ORF3a | 253 | S253S | tcC | tcT | 2 | 2 | W.3 | 0.010526 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 1 | A.2 | 0.000662 |
ORF3a | 253 | S253S | tcC | tcG | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | A.23.1 | 0.000704 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | A.3 | 0.002096 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | AY.104 | 0.001984 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | AY.120.1 | 0.000321 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | AY.23.1 | 0.000417 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | AY.38 | 0.000499 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | AY.57 | 0.000656 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 1 | AY.7.1 | 0.000113 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | AY.73 | 0.000665 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | AY.8 | 0.000606 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | AY.84 | 0.000437 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | AY.97 | 0.001701 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.1.129 | 0.009174 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.1.135 | 0.004695 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 1 | B.1.1.153 | 0.001095 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.1.253 | 0.002506 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.1.273 | 0.006757 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 1 | B.1.1.312 | 0.001912 |
ORF3a | 253 | S253S | tcC | tcG | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.1.344 | 0.010753 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.1.381 | 0.04 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.1.421 | 0.030303 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.1.462 | 0.008621 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.1.485 | 0.016667 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.128 | 0.000635 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.139 | 0.000733 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 1 | B.1.177.56 | 0.000668 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.177.58 | 0.001332 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.258.7 | 0.001912 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.315 | 0.006061 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF3a | 253 | S253S | tcC | tcG | 1 | 1 | B.1.36.9 | 0.003215 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.388 | 0.090909 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.408 | 0.00369 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.416 | 0.001269 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.424 | 0.008065 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 1 | B.1.429.1 | 0.012048 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.450 | 0.011364 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 1 | B.1.503 | 0.002488 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.549 | 0.007194 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.577 | 0.000687 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.580 | 0.004065 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.598 | 0.016949 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.610 | 0.003546 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.3 | 0.000831 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | B.6 | 0.00091 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | C.1.2 | 0.004255 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | C.2.1 | 0.006667 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | C.29 | 0.0625 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | C.35 | 0.000774 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | N.9 | 0.005952 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 1 | P.3 | 0.001595 |
ORF3a | 253 | S253S | tcC | tcT | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 253 | S253S | tcC | tcA | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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