CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = S253P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a253S253PnonsynTccCcc1150881149660.9989426149-26151
ORF3a253S253PnonsynTcCCcT1150881060.00092103426149-26151
ORF3a253S253PnonsynTcCCcA115088150.00013033526149-26151
ORF3a253S253PnonsynTcCCcG11508810.00000868926149-26151

Details of the mutation S253P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a253S253PTccCcc114966115088All0.021989
ORF3a253S253PTcCCcT106115088All0.00002
ORF3a253S253PTcCCcA15115088All0.000003
ORF3a253S253PTcCCcG1115088All0
ORF3a253S253PTccCcc6267362765P.10.98735
ORF3a253S253PTcCCcT8862765P.10.001386
ORF3a253S253PTcCCcA362765P.10.000047
ORF3a253S253PTcCCcG162765P.10.000016
ORF3a253S253PTccCcc2087120883P.1.140.997658
ORF3a253S253PTcCCcT720883P.1.140.000335
ORF3a253S253PTcCCcA520883P.1.140.000239
ORF3a253S253PTccCcc61076107P.1.170.987868
ORF3a253S253PTccCcc42304235P.1.150.982807
ORF3a253S253PTcCCcT54235P.1.150.001162
ORF3a253S253PTccCcc36593659P.1.100.985988
ORF3a253S253PTccCcc31123112P.1.70.993614
ORF3a253S253PTccCcc28682876P.1.10.911055
ORF3a253S253PTcCCcA72876P.1.10.002224
ORF3a253S253PTcCCcT12876P.1.10.000318
ORF3a253S253PTccCcc26322632P.1.160.984661
ORF3a253S253PTccCcc18891890P.1.120.914327
ORF3a253S253PTcCCcT11890P.1.120.000484
ORF3a253S253PTccCcc11411141P.1.17.10.99825
ORF3a253S253PTccCcc10981098P.1.130.986523
ORF3a253S253PTccCcc10231023P.1.40.999023
ORF3a253S253PTccCcc861861P.1.20.995376
ORF3a253S253PTccCcc508508P.1.60.988327
ORF3a253S253PTccCcc312314B.1.1.280.097106
ORF3a253S253PTcCCcT2314B.1.1.280.000622
ORF3a253S253PTccCcc209209B.1.4270.010554
ORF3a253S253PTccCcc209209P.1.81
ORF3a253S253PTccCcc206206P.1.90.990385
ORF3a253S253PTccCcc168169B.10.001539
ORF3a253S253PTcCCcT1169B.10.000009
ORF3a253S253PTccCcc153153B.1.10.002776
ORF3a253S253PTccCcc108108P.1.10.10.878049
ORF3a253S253PTccCcc103103B.1.1.70.000092
ORF3a253S253PTccCcc9898P.1.111
ORF3a253S253PTccCcc6969AY.40.000107
ORF3a253S253PTccCcc5858AY.250.000349
ORF3a253S253PTccCcc4041AY.440.000243
ORF3a253S253PTcCCcT141AY.440.000006
ORF3a253S253PTccCcc3434AY.930.009285
ORF3a253S253PTccCcc3232AY.30.000318
ORF3a253S253PTccCcc2929B.1.1.5280.139423
ORF3a253S253PTccCcc2929P.1.31
ORF3a253S253PTccCcc2828B.1.617.20.000105
ORF3a253S253PTccCcc2424P.1.10.21
ORF3a253S253PTccCcc2222B.1.20.000194
ORF3a253S253PTccCcc2121B.1.36.210.045356
ORF3a253S253PTccCcc1919C.370.002205
ORF3a253S253PTccCcc1818A.2.50.008982
ORF3a253S253PTccCcc1414B.1.1770.000184
ORF3a253S253PTccCcc1313AY.1030.000081
ORF3a253S253PTccCcc1313AY.260.000368
ORF3a253S253PTccCcc1313AY.430.000058
ORF3a253S253PTccCcc1313P.1.51
ORF3a253S253PTccCcc1010AY.60.000411
ORF3a253S253PTccCcc1010AY.9.20.000367
ORF3a253S253PTccCcc1010P.20.001866
ORF3a253S253PTccCcc88B.1.1.1610.028269
ORF3a253S253PTccCcc88B.1.2210.000568
ORF3a253S253PTccCcc88B.1.3490.005718
ORF3a253S253PTccCcc88B.1.4290.000188
ORF3a253S253PTccCcc88B.1.6210.000708
ORF3a253S253PTccCcc77AY.200.000272
ORF3a253S253PTccCcc77B.1.5260.000165
ORF3a253S253PTccCcc66B.1.2340.000792
ORF3a253S253PTccCcc66B.1.258.30.01005
ORF3a253S253PTccCcc66B.1.6370.000438
ORF3a253S253PTccCcc55B.1.1.5070.043478
ORF3a253S253PTccCcc44AY.270.000259
ORF3a253S253PTccCcc44AY.4.20.000087
ORF3a253S253PTccCcc44AY.50.000083
ORF3a253S253PTccCcc33AY.130.000483
ORF3a253S253PTccCcc33AY.410.000882
ORF3a253S253PTccCcc33B.1.1.3720.002066
ORF3a253S253PTccCcc33B.1.1.4090.008499
ORF3a253S253PTccCcc33B.1.5960.000261
ORF3a253S253PTccCcc33B.1.6230.001609
ORF3a253S253PTccCcc22AY.140.000176
ORF3a253S253PTccCcc22AY.420.00008
ORF3a253S253PTccCcc22AY.5.40.000553
ORF3a253S253PTccCcc22AY.610.00021
ORF3a253S253PTccCcc22AY.740.000231
ORF3a253S253PTccCcc22AY.75.10.000361
ORF3a253S253PTccCcc22AY.98.10.000097
ORF3a253S253PTccCcc22B0.000256
ORF3a253S253PTccCcc22B.1.1.2200.003717
ORF3a253S253PTccCcc22B.1.1.3120.003824
ORF3a253S253PTccCcc22B.1.1.5190.000079
ORF3a253S253PTccCcc22B.1.1600.000062
ORF3a253S253PTccCcc22B.1.177.70.00033
ORF3a253S253PTccCcc22B.1.2580.000133
ORF3a253S253PTccCcc22B.1.258.60.039216
ORF3a253S253PTccCcc22B.1.3110.000549
ORF3a253S253PTccCcc22B.1.351.50.001199
ORF3a253S253PTccCcc22B.1.5330.019231
ORF3a253S253PTccCcc22C.37.10.005236
ORF3a253S253PTccCcc11AY.1010.00049
ORF3a253S253PTccCcc11AY.1020.000027
ORF3a253S253PTccCcc11AY.1150.005208
ORF3a253S253PTccCcc11AY.1160.000287
ORF3a253S253PTccCcc11AY.1170.000085
ORF3a253S253PTccCcc11AY.1190.000035
ORF3a253S253PTccCcc11AY.1200.000037
ORF3a253S253PTccCcc11AY.120.10.000321
ORF3a253S253PTccCcc11AY.23.10.000417
ORF3a253S253PTccCcc11AY.280.00189
ORF3a253S253PTccCcc11AY.290.000016
ORF3a253S253PTccCcc11AY.3.10.000085
ORF3a253S253PTccCcc11AY.320.000532
ORF3a253S253PTccCcc11AY.360.000148
ORF3a253S253PTccCcc11AY.380.000499
ORF3a253S253PTccCcc11AY.39.10.00004
ORF3a253S253PTccCcc11AY.460.000104
ORF3a253S253PTccCcc11AY.470.000031
ORF3a253S253PTccCcc11AY.5.30.000337
ORF3a253S253PTccCcc11AY.620.000436
ORF3a253S253PTccCcc11AY.680.000274
ORF3a253S253PTccCcc11AY.830.001724
ORF3a253S253PTccCcc11AY.9.10.000084
ORF3a253S253PTccCcc11AY.990.001049
ORF3a253S253PTccCcc11B.1.1.1210.002427
ORF3a253S253PTccCcc11B.1.1.1980.001468
ORF3a253S253PTccCcc11B.1.1.2360.006897
ORF3a253S253PTccCcc11B.1.1.2650.003155
ORF3a253S253PTccCcc11B.1.1.2690.001353
ORF3a253S253PTccCcc11B.1.1.2850.006536
ORF3a253S253PTccCcc11B.1.1.330.000421
ORF3a253S253PTccCcc11B.1.1.370.000193
ORF3a253S253PTccCcc11B.1.1.3970.002252
ORF3a253S253PTccCcc11B.1.1.4070.041667
ORF3a253S253PTccCcc11B.1.1.4320.001266
ORF3a253S253PTccCcc11B.1.1.540.003021
ORF3a253S253PTccCcc11B.1.1.80.003584
ORF3a253S253PTccCcc11B.1.1700.00431
ORF3a253S253PTccCcc11B.1.177.170.000821
ORF3a253S253PTccCcc11B.1.177.230.003236
ORF3a253S253PTccCcc11B.1.1790.003759
ORF3a253S253PTccCcc11B.1.2060.000816
ORF3a253S253PTccCcc11B.1.2140.003663
ORF3a253S253PTccCcc11B.1.214.20.0006
ORF3a253S253PTccCcc11B.1.2430.00007
ORF3a253S253PTccCcc11B.1.258.110.000396
ORF3a253S253PTccCcc11B.1.3690.000285
ORF3a253S253PTccCcc11B.1.3750.00082
ORF3a253S253PTccCcc11B.1.4000.000429
ORF3a253S253PTccCcc11B.1.4150.014286
ORF3a253S253PTccCcc11B.1.4970.000315
ORF3a253S253PTccCcc11B.1.5250.000113
ORF3a253S253PTccCcc11B.1.5610.000397
ORF3a253S253PTccCcc11B.1.5750.000303
ORF3a253S253PTccCcc11B.1.5880.00091
ORF3a253S253PTccCcc11B.1.617.10.000129
ORF3a253S253PTccCcc11B.1.6360.006711
ORF3a253S253PTccCcc11B.1.9.40.006135
ORF3a253S253PTccCcc11B.1.910.002075
ORF3a253S253PTccCcc11B.4.50.011905
ORF3a253S253PTccCcc11C.230.005814
ORF3a253S253PTccCcc11C.350.000774
ORF3a253S253PTccCcc11P.40.003802
ORF3a253S253PTccCcc11P.70.004367