CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = S209S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a209S209SsyntcAtcG6514360.66973926017-26019
ORF3a209S209SsyntcAtcT6511580.24270426017-26019
ORF3a209S209SsyntcAtcC651570.087557626017-26019

Details of the mutation S209S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a209S209StcAtcG436651All0.000083
ORF3a209S209StcAtcT158651All0.00003
ORF3a209S209StcAtcC57651All0.000011
ORF3a209S209StcAtcG138150B.1.1.70.000124
ORF3a209S209StcAtcT12150B.1.1.70.000011
ORF3a209S209StcAtcG146146AY.1090.107988
ORF3a209S209StcAtcT2642AY.40.00004
ORF3a209S209StcAtcG842AY.40.000012
ORF3a209S209StcAtcC842AY.40.000012
ORF3a209S209StcAtcT2435B.1.617.20.00009
ORF3a209S209StcAtcG635B.1.617.20.000023
ORF3a209S209StcAtcC535B.1.617.20.000019
ORF3a209S209StcAtcG1321AY.250.000078
ORF3a209S209StcAtcC521AY.250.00003
ORF3a209S209StcAtcT321AY.250.000018
ORF3a209S209StcAtcG1616B.1.6200.015137
ORF3a209S209StcAtcC1515B.1.1.4011
ORF3a209S209StcAtcG914AY.430.00004
ORF3a209S209StcAtcT414AY.430.000018
ORF3a209S209StcAtcC114AY.430.000004
ORF3a209S209StcAtcT1012AY.440.000061
ORF3a209S209StcAtcG212AY.440.000012
ORF3a209S209StcAtcG1111AY.99.20.001014
ORF3a209S209StcAtcG1011B.1.3510.000297
ORF3a209S209StcAtcT111B.1.3510.00003
ORF3a209S209StcAtcT510B.1.20.000044
ORF3a209S209StcAtcG410B.1.20.000035
ORF3a209S209StcAtcC110B.1.20.000009
ORF3a209S209StcAtcG88B.1.1.3650.044693
ORF3a209S209StcAtcT77B.1.110.30.005029
ORF3a209S209StcAtcG77B.1.5580.031963
ORF3a209S209StcAtcG66AY.1030.000037
ORF3a209S209StcAtcT66AY.200.000233
ORF3a209S209StcAtcG66AY.9.20.00022
ORF3a209S209StcAtcG35AY.1020.00008
ORF3a209S209StcAtcC15AY.1020.000027
ORF3a209S209StcAtcT15AY.1020.000027
ORF3a209S209StcAtcC45AY.50.000083
ORF3a209S209StcAtcT15AY.50.000021
ORF3a209S209StcAtcT55AY.600.00469
ORF3a209S209StcAtcT44A0.001548
ORF3a209S209StcAtcG24AY.390.000049
ORF3a209S209StcAtcT24AY.390.000049
ORF3a209S209StcAtcG44AY.46.60.000289
ORF3a209S209StcAtcT24B.10.000018
ORF3a209S209StcAtcC14B.10.000009
ORF3a209S209StcAtcG14B.10.000009
ORF3a209S209StcAtcT44B.1.1.280.001245
ORF3a209S209StcAtcT44B.1.177.570.001124
ORF3a209S209StcAtcG23AY.30.00002
ORF3a209S209StcAtcT13AY.30.00001
ORF3a209S209StcAtcG33AY.460.000312
ORF3a209S209StcAtcG23B.1.10.000036
ORF3a209S209StcAtcT13B.1.10.000018
ORF3a209S209StcAtcT33B.1.1.2160.002671
ORF3a209S209StcAtcT33B.1.1.2770.002276
ORF3a209S209StcAtcG33B.1.2430.000209
ORF3a209S209StcAtcC13B.1.4290.000024
ORF3a209S209StcAtcT13B.1.4290.000024
ORF3a209S209StcAtcG13B.1.4290.000024
ORF3a209S209StcAtcC33B.1.5960.000261
ORF3a209S209StcAtcC33B.1.6370.000219
ORF3a209S209StcAtcG33B.60.00273
ORF3a209S209StcAtcT33C.140.012987
ORF3a209S209StcAtcG33C.370.000348
ORF3a209S209StcAtcC23P.1.160.000748
ORF3a209S209StcAtcT13P.1.160.000374
ORF3a209S209StcAtcT22AY.1190.000071
ORF3a209S209StcAtcT12AY.330.000067
ORF3a209S209StcAtcG12AY.330.000067
ORF3a209S209StcAtcT22AY.4.20.000043
ORF3a209S209StcAtcG22AY.850.000854
ORF3a209S209StcAtcT22AZ.20.001642
ORF3a209S209StcAtcT22B.1.6210.000177
ORF3a209S209StcAtcG11AD.20.000219
ORF3a209S209StcAtcT11AE.80.000489
ORF3a209S209StcAtcG11AY.130.000161
ORF3a209S209StcAtcT11AY.240.000431
ORF3a209S209StcAtcC11AY.270.000065
ORF3a209S209StcAtcT11AY.320.000532
ORF3a209S209StcAtcG11AY.360.000148
ORF3a209S209StcAtcG11AY.4.50.000107
ORF3a209S209StcAtcC11AY.46.40.000165
ORF3a209S209StcAtcG11AY.470.000031
ORF3a209S209StcAtcG11AY.540.000095
ORF3a209S209StcAtcT11AY.590.00053
ORF3a209S209StcAtcT11AY.60.000041
ORF3a209S209StcAtcC11AY.670.000464
ORF3a209S209StcAtcT11AY.740.000116
ORF3a209S209StcAtcC11AY.750.000056
ORF3a209S209StcAtcT11AY.940.000443
ORF3a209S209StcAtcT11AY.98.10.000048
ORF3a209S209StcAtcC11AZ.10.000867
ORF3a209S209StcAtcC11B0.000128
ORF3a209S209StcAtcG11B.1.1.3060.000438
ORF3a209S209StcAtcG11B.1.1.330.000421
ORF3a209S209StcAtcT11B.1.1.480.002874
ORF3a209S209StcAtcG11B.1.177.70.000165
ORF3a209S209StcAtcT11B.1.2580.000067
ORF3a209S209StcAtcT11B.1.351.20.000303
ORF3a209S209StcAtcT11B.1.36.220.001208
ORF3a209S209StcAtcC11B.1.3620.001541
ORF3a209S209StcAtcT11B.1.438.10.000107
ORF3a209S209StcAtcG11B.1.5260.000024
ORF3a209S209StcAtcG11B.1.617.10.000129
ORF3a209S209StcAtcG11C.320.023256
ORF3a209S209StcAtcG11P.1.120.000484
ORF3a209S209StcAtcG11P.1.140.000048
ORF3a209S209StcAtcT11P.1.150.000232
ORF3a209S209StcAtcT11P.20.000187
ORF3a209S209StcAtcG11P.70.004367
ORF3a209S209StcAtcG11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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