CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = S209L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a209S209LnonsyntCatTa2922800.95890426017-26019
ORF3a209S209LnonsynTCaCTa292120.041095926017-26019

Details of the mutation S209L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a209S209LtCatTa280292All0.000054
ORF3a209S209LTCaCTa12292All0.000002
ORF3a209S209LtCatTa6767B.1.1.70.00006
ORF3a209S209LtCatTa3737P.10.000583
ORF3a209S209LtCatTa2525B.1.20.00022
ORF3a209S209LtCatTa2123B.1.617.20.000079
ORF3a209S209LTCaCTa223B.1.617.20.000008
ORF3a209S209LtCatTa2020B.1.5950.005219
ORF3a209S209LtCatTa1616AY.7.10.001803
ORF3a209S209LtCatTa1313C.370.001509
ORF3a209S209LtCatTa1010AY.30.000099
ORF3a209S209LTCaCTa78AY.980.000553
ORF3a209S209LtCatTa18AY.980.000079
ORF3a209S209LtCatTa88B.1.1.2140.000444
ORF3a209S209LtCatTa66AY.430.000027
ORF3a209S209LtCatTa55AY.40.000008
ORF3a209S209LtCatTa44AY.260.000113
ORF3a209S209LtCatTa33AY.250.000018
ORF3a209S209LtCatTa33AY.39.10.000119
ORF3a209S209LtCatTa33B.1.10.000054
ORF3a209S209LtCatTa33B.1.1.700.001023
ORF3a209S209LtCatTa220.111111
ORF3a209S209LTCaCTa22AY.1020.000053
ORF3a209S209LtCatTa22AY.46.60.000144
ORF3a209S209LtCatTa22AY.740.000231
ORF3a209S209LtCatTa22B.1.2340.000264
ORF3a209S209LtCatTa11A.270.001656
ORF3a209S209LtCatTa11AY.1170.000085
ORF3a209S209LtCatTa11AY.1200.000037
ORF3a209S209LtCatTa11AY.200.000039
ORF3a209S209LtCatTa11AY.380.000499
ORF3a209S209LTCaCTa11AY.390.000025
ORF3a209S209LtCatTa11AY.4.20.000022
ORF3a209S209LtCatTa11AY.420.00004
ORF3a209S209LtCatTa11AY.46.20.000635
ORF3a209S209LtCatTa11AY.470.000031
ORF3a209S209LtCatTa11AY.700.000209
ORF3a209S209LtCatTa11AY.790.001211
ORF3a209S209LtCatTa11AY.830.001724
ORF3a209S209LtCatTa11AY.970.001701
ORF3a209S209LtCatTa11B.10.000009
ORF3a209S209LtCatTa11B.1.1.1010.01
ORF3a209S209LtCatTa11B.1.1.3060.000438
ORF3a209S209LtCatTa11B.1.1.330.000421
ORF3a209S209LtCatTa11B.1.1.370.000193
ORF3a209S209LtCatTa11B.1.1770.000013
ORF3a209S209LtCatTa11B.1.3510.00003
ORF3a209S209LtCatTa11B.1.351.30.000876
ORF3a209S209LtCatTa11B.1.4290.000024
ORF3a209S209LtCatTa11B.1.5960.000087
ORF3a209S209LtCatTa11P.1.120.000484
ORF3a209S209LtCatTa11P.1.140.000048
ORF3a209S209LtCatTa11P.1.20.001156
ORF3a209S209LtCatTa11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.