CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = S180S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a180S180SsyntcTtcC2371340.56540125930-25932
ORF3a180S180SsyntcTtcA237610.25738425930-25932
ORF3a180S180SsyntcTtcG237420.17721525930-25932

Details of the mutation S180S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a180S180StcTtcC134237All0.000026
ORF3a180S180StcTtcA61237All0.000012
ORF3a180S180StcTtcG42237All0.000008
ORF3a180S180StcTtcA4156B.1.1.70.000037
ORF3a180S180StcTtcC1056B.1.1.70.000009
ORF3a180S180StcTtcG556B.1.1.70.000004
ORF3a180S180StcTtcG2124B.1.4290.000494
ORF3a180S180StcTtcA324B.1.4290.000071
ORF3a180S180StcTtcC913AY.40.000014
ORF3a180S180StcTtcG313AY.40.000005
ORF3a180S180StcTtcA113AY.40.000002
ORF3a180S180StcTtcC913B.1.617.20.000034
ORF3a180S180StcTtcA313B.1.617.20.000011
ORF3a180S180StcTtcG113B.1.617.20.000004
ORF3a180S180StcTtcC1212AY.30.000119
ORF3a180S180StcTtcC1111AY.60.000452
ORF3a180S180StcTtcC78AY.440.000043
ORF3a180S180StcTtcG18AY.440.000006
ORF3a180S180StcTtcC66B.1.36.180.002521
ORF3a180S180StcTtcC66C.36.20.206897
ORF3a180S180StcTtcC55AY.390.000124
ORF3a180S180StcTtcC55AY.430.000022
ORF3a180S180StcTtcC55B.1.1.1570.004566
ORF3a180S180StcTtcG55B.1.360.00073
ORF3a180S180StcTtcC44AY.1000.000184
ORF3a180S180StcTtcC24AY.250.000012
ORF3a180S180StcTtcA24AY.250.000012
ORF3a180S180StcTtcC34D.20.000225
ORF3a180S180StcTtcG14D.20.000075
ORF3a180S180StcTtcC23AY.1020.000053
ORF3a180S180StcTtcA13AY.1020.000027
ORF3a180S180StcTtcC33AY.1030.000019
ORF3a180S180StcTtcC33AY.610.000314
ORF3a180S180StcTtcC33B.10.000027
ORF3a180S180StcTtcC23B.1.20.000018
ORF3a180S180StcTtcA13B.1.20.000009
ORF3a180S180StcTtcA33B.1.2180.015464
ORF3a180S180StcTtcC23B.1.2430.000139
ORF3a180S180StcTtcA13B.1.2430.00007
ORF3a180S180StcTtcC33C.36.30.001702
ORF3a180S180StcTtcC33P.1.140.000143
ORF3a180S180StcTtcC12AY.200.000039
ORF3a180S180StcTtcA12AY.200.000039
ORF3a180S180StcTtcC22AY.75.10.000361
ORF3a180S180StcTtcC12B.1.1.3060.000438
ORF3a180S180StcTtcG12B.1.1.3060.000438
ORF3a180S180StcTtcC22B.1.1.3690.000892
ORF3a180S180StcTtcG22B.1.36.100.009569
ORF3a180S180StcTtcC22P.1.17.10.00175
ORF3a180S180StcTtcC11A.50.001923
ORF3a180S180StcTtcG11AY.290.000016
ORF3a180S180StcTtcC11AY.330.000067
ORF3a180S180StcTtcA11AY.420.00004
ORF3a180S180StcTtcC11AY.850.000427
ORF3a180S180StcTtcC11B.1.10.000018
ORF3a180S180StcTtcC11B.1.1.5190.00004
ORF3a180S180StcTtcC11B.1.1600.000031
ORF3a180S180StcTtcA11B.1.1770.000013
ORF3a180S180StcTtcC11B.1.2410.000812
ORF3a180S180StcTtcC11B.1.3510.00003
ORF3a180S180StcTtcC11B.1.400.019608
ORF3a180S180StcTtcA11B.330.021277
ORF3a180S180StcTtcC11B.390.002331
ORF3a180S180StcTtcG11N.30.005814
ORF3a180S180StcTtcA11P.1.150.000232
ORF3a180S180StcTtcC11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.