CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = S180F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a180S180FnonsyntCttTt187718750.99893425930-25932
ORF3a180S180FnonsyntCTtTC187720.0010655325930-25932

Details of the mutation S180F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a180S180FtCttTt18751877All0.000359
ORF3a180S180FtCTtTC21877All0
ORF3a180S180FtCttTt12811281AY.900.876797
ORF3a180S180FtCttTt108108B.1.6360.724832
ORF3a180S180FtCttTt8080B.1.1.70.000072
ORF3a180S180FtCttTt3939B.1.617.20.000147
ORF3a180S180FtCttTt3535AY.40.000054
ORF3a180S180FtCttTt3131B.1.1.280.009648
ORF3a180S180FtCttTt1818P.1.20.020809
ORF3a180S180FtCttTt1515AY.34.10.007649
ORF3a180S180FtCttTt1414AY.370.004425
ORF3a180S180FtCttTt1414B.10.000128
ORF3a180S180FtCttTt1313AY.250.000078
ORF3a180S180FtCttTt1212AY.1190.000424
ORF3a180S180FtCttTt1212B.1.1.3060.005261
ORF3a180S180FtCttTt1212B.1.5260.000282
ORF3a180S180FtCttTt1011AY.30.000099
ORF3a180S180FtCTtTC111AY.30.00001
ORF3a180S180FtCttTt1010AY.1030.000062
ORF3a180S180FtCttTt99AY.200.00035
ORF3a180S180FtCttTt99B.1.10.000163
ORF3a180S180FtCttTt99B.1.1.2140.000499
ORF3a180S180FtCttTt99B.1.20.000079
ORF3a180S180FtCttTt88AY.430.000035
ORF3a180S180FtCttTt78AY.440.000043
ORF3a180S180FtCTtTC18AY.440.000006
ORF3a180S180FtCttTt77B.1.1770.000092
ORF3a180S180FtCttTt77B.1.4290.000165
ORF3a180S180FtCttTt66B.1.5490.043165
ORF3a180S180FtCttTt66P.20.00112
ORF3a180S180FtCttTt44AD.20.000876
ORF3a180S180FtCttTt44AY.260.000113
ORF3a180S180FtCttTt44B.1.1.500.002716
ORF3a180S180FtCttTt44P.10.000063
ORF3a180S180FtCttTt33AY.540.000286
ORF3a180S180FtCttTt33AY.750.000168
ORF3a180S180FtCttTt33B.1.1.5250.016393
ORF3a180S180FtCttTt22AU.30.004219
ORF3a180S180FtCttTt22AY.1180.000125
ORF3a180S180FtCttTt22AY.1210.000271
ORF3a180S180FtCttTt22AY.4.20.000043
ORF3a180S180FtCttTt22AY.50.000041
ORF3a180S180FtCttTt22AY.70.000392
ORF3a180S180FtCttTt22B.1.1.4340.000697
ORF3a180S180FtCttTt22B.1.1600.000062
ORF3a180S180FtCttTt22B.1.177.810.000379
ORF3a180S180FtCttTt22B.1.2340.000264
ORF3a180S180FtCttTt22B.1.2580.000133
ORF3a180S180FtCttTt22B.1.3670.001585
ORF3a180S180FtCttTt22B.1.5380.016129
ORF3a180S180FtCttTt22B.1.5950.000522
ORF3a180S180FtCttTt22B.1.6210.000177
ORF3a180S180FtCttTt22P.40.007605
ORF3a180S180FtCttTt22P.70.008734
ORF3a180S180FtCttTt11AY.1000.000046
ORF3a180S180FtCttTt11AY.116.10.000311
ORF3a180S180FtCttTt11AY.1200.000037
ORF3a180S180FtCttTt11AY.280.00189
ORF3a180S180FtCttTt11AY.290.000016
ORF3a180S180FtCttTt11AY.390.000025
ORF3a180S180FtCttTt11AY.580.000907
ORF3a180S180FtCttTt11AY.610.000105
ORF3a180S180FtCttTt11AY.650.000533
ORF3a180S180FtCttTt11AY.670.000464
ORF3a180S180FtCttTt11AY.7.10.000113
ORF3a180S180FtCttTt11AY.9.20.000037
ORF3a180S180FtCttTt11B.1.1.1760.000439
ORF3a180S180FtCttTt11B.1.1.3040.002809
ORF3a180S180FtCttTt11B.1.1260.001276
ORF3a180S180FtCttTt11B.1.177.150.000631
ORF3a180S180FtCttTt11B.1.1890.004292
ORF3a180S180FtCttTt11B.1.2230.002778
ORF3a180S180FtCttTt11B.1.2400.000216
ORF3a180S180FtCttTt11B.1.351.30.000876
ORF3a180S180FtCttTt11B.1.360.000146
ORF3a180S180FtCttTt11B.1.3750.00082
ORF3a180S180FtCttTt11B.1.4000.000429
ORF3a180S180FtCttTt11B.1.4270.00005
ORF3a180S180FtCttTt11B.1.4590.004082
ORF3a180S180FtCttTt11B.1.4700.001404
ORF3a180S180FtCttTt11B.1.5170.000427
ORF3a180S180FtCttTt11B.1.5250.000113
ORF3a180S180FtCttTt11B.1.5400.009709
ORF3a180S180FtCttTt11B.1.5960.000087
ORF3a180S180FtCttTt11B.1.6090.000479
ORF3a180S180FtCttTt11B.6.60.000889
ORF3a180S180FtCttTt11D.20.000075
ORF3a180S180FtCttTt11P.1.120.000484
ORF3a180S180FtCttTt11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.