CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = P42del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a42P42del1delccTcc-1801790.99444425516-25518
ORF3a42P42del1delCct-ct18010.0055555625516-25518

Details of the mutation P42del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a42P42del1ccTcc-179180All0.000034
ORF3a42P42del1Cct-ct1180All0
ORF3a42P42del1ccTcc-109109B.1.617.30.325373
ORF3a42P42del1ccTcc-1111AY.40.000017
ORF3a42P42del1ccTcc-99P.1.10.002859
ORF3a42P42del1ccTcc-55AY.50.000103
ORF3a42P42del1ccTcc-34AY.250.000018
ORF3a42P42del1Cct-ct14AY.250.000006
ORF3a42P42del1ccTcc-44B.1.1.70.000004
ORF3a42P42del1ccTcc-44B.1.617.20.000015
ORF3a42P42del1ccTcc-33AY.1180.000188
ORF3a42P42del1ccTcc-33AY.30.00003
ORF3a42P42del1ccTcc-33AY.440.000018
ORF3a42P42del1ccTcc-33B.1.10.000054
ORF3a42P42del1ccTcc-33B.1.20.000026
ORF3a42P42del1ccTcc-22AY.1000.000092
ORF3a42P42del1ccTcc-22AY.1030.000012
ORF3a42P42del1ccTcc-22AY.39.10.000079
ORF3a42P42del1ccTcc-22AY.430.000009
ORF3a42P42del1ccTcc-22B.10.000018
ORF3a42P42del1ccTcc-11AP.10.001502
ORF3a42P42del1ccTcc-11AY.1190.000035
ORF3a42P42del1ccTcc-11AY.140.000088
ORF3a42P42del1ccTcc-11AY.90.000068
ORF3a42P42del1ccTcc-11AY.980.000079
ORF3a42P42del1ccTcc-11B.1.1.2140.000055
ORF3a42P42del1ccTcc-11B.1.177.210.000076
ORF3a42P42del1ccTcc-11B.1.4290.000024
ORF3a42P42del1ccTcc-11B.1.5960.000087