CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = P42S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a42P42SnonsynCctTct49644964125516-25518

Details of the mutation P42S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a42P42SCctTct49644964All0.000949
ORF3a42P42SCctTct28132813AY.120.889064
ORF3a42P42SCctTct600600B.1.1.70.000537
ORF3a42P42SCctTct234234AY.40.000364
ORF3a42P42SCctTct135135AY.430.000598
ORF3a42P42SCctTct117117B.1.617.20.000441
ORF3a42P42SCctTct7676AY.440.000463
ORF3a42P42SCctTct6666AY.250.000397
ORF3a42P42SCctTct6161AY.1030.000379
ORF3a42P42SCctTct5757B.1.4270.002878
ORF3a42P42SCctTct5555B.1.1770.000724
ORF3a42P42SCctTct4949B.1.20.000431
ORF3a42P42SCctTct4747B.10.00043
ORF3a42P42SCctTct4242AY.30.000418
ORF3a42P42SCctTct4242B.1.4290.000988
ORF3a42P42SCctTct3333AY.390.000815
ORF3a42P42SCctTct3333AY.840.014436
ORF3a42P42SCctTct2929B.1.1600.000904
ORF3a42P42SCctTct2626AY.610.002724
ORF3a42P42SCctTct2525P.10.000394
ORF3a42P42SCctTct2424AY.46.60.001733
ORF3a42P42SCctTct2424B.1.2210.001705
ORF3a42P42SCctTct2222AY.5.30.007422
ORF3a42P42SCctTct2121B.1.6210.001859
ORF3a42P42SCctTct1616AY.260.000453
ORF3a42P42SCctTct1414AY.1190.000494
ORF3a42P42SCctTct1414B.1.4090.010937
ORF3a42P42SCctTct1313AY.1020.000345
ORF3a42P42SCctTct1313AY.39.10.000515
ORF3a42P42SCctTct1313B.1.621.10.006576
ORF3a42P42SCctTct99AY.340.000873
ORF3a42P42SCctTct88B.1.258.170.000832
ORF3a42P42SCctTct88B.1.36.10.009122
ORF3a42P42SCctTct88B.1.36.80.008
ORF3a42P42SCctTct77B.1.617.10.000903
ORF3a42P42SCctTct66AY.1200.000223
ORF3a42P42SCctTct66AY.4.50.000645
ORF3a42P42SCctTct66AY.740.000694
ORF3a42P42SCctTct55AY.1170.000423
ORF3a42P42SCctTct55AY.290.000079
ORF3a42P42SCctTct55AY.330.000334
ORF3a42P42SCctTct55AY.460.00052
ORF3a42P42SCctTct55AY.80.00303
ORF3a42P42SCctTct55P.1.130.004492
ORF3a42P42SCctTct440.222222
ORF3a42P42SCctTct44AY.200.000155
ORF3a42P42SCctTct44AY.520.003257
ORF3a42P42SCctTct44AY.750.000224
ORF3a42P42SCctTct44B.1.1.630.001543
ORF3a42P42SCctTct44B.1.3690.001141
ORF3a42P42SCctTct33AY.1060.001005
ORF3a42P42SCctTct33AY.1130.000427
ORF3a42P42SCctTct33AY.1160.00086
ORF3a42P42SCctTct33AY.140.000264
ORF3a42P42SCctTct33AY.950.002283
ORF3a42P42SCctTct33AY.98.10.000145
ORF3a42P42SCctTct33B.1.10.000054
ORF3a42P42SCctTct33B.1.1.280.000934
ORF3a42P42SCctTct33B.1.177.70.000495
ORF3a42P42SCctTct33B.1.2580.0002
ORF3a42P42SCctTct33B.1.3510.000089
ORF3a42P42SCctTct22AY.1070.000932
ORF3a42P42SCctTct22AY.1110.000366
ORF3a42P42SCctTct22AY.230.000139
ORF3a42P42SCctTct22AY.270.000129
ORF3a42P42SCctTct22AY.4.40.000818
ORF3a42P42SCctTct22AY.400.001929
ORF3a42P42SCctTct22AY.620.000871
ORF3a42P42SCctTct22AY.630.000774
ORF3a42P42SCctTct22AY.75.10.000361
ORF3a42P42SCctTct22AY.9.10.000167
ORF3a42P42SCctTct22AY.920.000575
ORF3a42P42SCctTct22AY.980.000158
ORF3a42P42SCctTct22B0.000256
ORF3a42P42SCctTct22B.1.1.2070.002364
ORF3a42P42SCctTct22B.1.1.3050.007722
ORF3a42P42SCctTct22B.1.1.3170.000823
ORF3a42P42SCctTct22B.1.1.370.000386
ORF3a42P42SCctTct22B.1.1.5190.000079
ORF3a42P42SCctTct22B.1.160.160.001859
ORF3a42P42SCctTct22D.20.00015
ORF3a42P42SCctTct11A.110.058824
ORF3a42P42SCctTct11A.2.50.000499
ORF3a42P42SCctTct11AY.1000.000046
ORF3a42P42SCctTct11AY.1090.00074
ORF3a42P42SCctTct11AY.116.10.000311
ORF3a42P42SCctTct11AY.1180.000063
ORF3a42P42SCctTct11AY.130.000161
ORF3a42P42SCctTct11AY.220.002092
ORF3a42P42SCctTct11AY.23.10.000417
ORF3a42P42SCctTct11AY.380.000499
ORF3a42P42SCctTct11AY.39.1.10.000725
ORF3a42P42SCctTct11AY.4.20.000022
ORF3a42P42SCctTct11AY.410.000294
ORF3a42P42SCctTct11AY.450.000122
ORF3a42P42SCctTct11AY.46.30.000934
ORF3a42P42SCctTct11AY.46.40.000165
ORF3a42P42SCctTct11AY.50.000021
ORF3a42P42SCctTct11AY.5.40.000277
ORF3a42P42SCctTct11AY.540.000095
ORF3a42P42SCctTct11AY.60.000041
ORF3a42P42SCctTct11AY.680.000274
ORF3a42P42SCctTct11AY.90.000068
ORF3a42P42SCctTct11AY.910.00073
ORF3a42P42SCctTct11AY.990.001049
ORF3a42P42SCctTct11AZ.10.000867
ORF3a42P42SCctTct11B.1.1.1170.009709
ORF3a42P42SCctTct11B.1.1.1390.022727
ORF3a42P42SCctTct11B.1.1.1590.004673
ORF3a42P42SCctTct11B.1.1.1920.002309
ORF3a42P42SCctTct11B.1.1.3060.000438
ORF3a42P42SCctTct11B.1.1.3110.000358
ORF3a42P42SCctTct11B.1.1.4480.002033
ORF3a42P42SCctTct11B.1.1.4640.001473
ORF3a42P42SCctTct11B.1.1.5240.020833
ORF3a42P42SCctTct11B.1.177.110.001698
ORF3a42P42SCctTct11B.1.177.40.000211
ORF3a42P42SCctTct11B.1.177.440.000519
ORF3a42P42SCctTct11B.1.177.730.000566
ORF3a42P42SCctTct11B.1.2400.000216
ORF3a42P42SCctTct11B.1.2430.00007
ORF3a42P42SCctTct11B.1.3460.001311
ORF3a42P42SCctTct11B.1.3500.002933
ORF3a42P42SCctTct11B.1.360.000146
ORF3a42P42SCctTct11B.1.36.160.001425
ORF3a42P42SCctTct11B.1.36.360.000602
ORF3a42P42SCctTct11B.1.3960.000706
ORF3a42P42SCctTct11B.1.3990.001934
ORF3a42P42SCctTct11B.1.4130.004255
ORF3a42P42SCctTct11B.1.438.10.000107
ORF3a42P42SCctTct11B.1.4560.003268
ORF3a42P42SCctTct11B.1.4700.001404
ORF3a42P42SCctTct11B.1.499.10.111111
ORF3a42P42SCctTct11B.1.5090.000866
ORF3a42P42SCctTct11B.1.5480.035714
ORF3a42P42SCctTct11B.1.5600.00463
ORF3a42P42SCctTct11B.1.5870.001898
ORF3a42P42SCctTct11B.1.5950.000261
ORF3a42P42SCctTct11B.1.5960.000087
ORF3a42P42SCctTct11B.1.6050.005952
ORF3a42P42SCctTct11B.1.6280.000352
ORF3a42P42SCctTct11B.550.00295
ORF3a42P42SCctTct11N.50.001767
ORF3a42P42SCctTct11P.1.140.000048
ORF3a42P42SCctTct11Q.10.000126
ORF3a42P42SCctTct11W.30.005263