CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = P42P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a42P42PsynccTccC497446830.94149625516-25518
ORF3a42P42PsynccTccG49742120.042621625516-25518
ORF3a42P42PsynccTccA4974790.015882625516-25518

Details of the mutation P42P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a42P42PccTccC46834974All0.000896
ORF3a42P42PccTccG2124974All0.000041
ORF3a42P42PccTccA794974All0.000015
ORF3a42P42PccTccC27382742B.1.617.20.01031
ORF3a42P42PccTccG42742B.1.617.20.000015
ORF3a42P42PccTccC785785AY.1020.020813
ORF3a42P42PccTccC232242B.1.1.70.000208
ORF3a42P42PccTccA5242B.1.1.70.000004
ORF3a42P42PccTccG5242B.1.1.70.000004
ORF3a42P42PccTccC71131AY.440.000432
ORF3a42P42PccTccG58131AY.440.000353
ORF3a42P42PccTccA2131AY.440.000012
ORF3a42P42PccTccC124124AY.390.003064
ORF3a42P42PccTccC99102AY.430.000439
ORF3a42P42PccTccA2102AY.430.000009
ORF3a42P42PccTccG1102AY.430.000004
ORF3a42P42PccTccC5959AY.1060.019759
ORF3a42P42PccTccC5858AY.1170.004902
ORF3a42P42PccTccC5858AY.34.10.029577
ORF3a42P42PccTccG5157B.10.000467
ORF3a42P42PccTccC557B.10.000046
ORF3a42P42PccTccA157B.10.000009
ORF3a42P42PccTccG3749AY.40.000058
ORF3a42P42PccTccC1249AY.40.000019
ORF3a42P42PccTccA3535B.1.1.5190.00139
ORF3a42P42PccTccC3535B.1.258.110.013872
ORF3a42P42PccTccC3232B.1.1770.000421
ORF3a42P42PccTccG2929B.1.6010.878788
ORF3a42P42PccTccC2323AY.1200.000855
ORF3a42P42PccTccC1720AY.1030.000106
ORF3a42P42PccTccA320AY.1030.000019
ORF3a42P42PccTccA1419AY.250.000084
ORF3a42P42PccTccC419AY.250.000024
ORF3a42P42PccTccG119AY.250.000006
ORF3a42P42PccTccC1717AY.460.001769
ORF3a42P42PccTccC1616AY.590.008475
ORF3a42P42PccTccC1515AY.770.016911
ORF3a42P42PccTccC1414AY.450.001704
ORF3a42P42PccTccC1414AY.730.009315
ORF3a42P42PccTccC1314B.1.20.000114
ORF3a42P42PccTccG114B.1.20.000009
ORF3a42P42PccTccC1313AY.230.000907
ORF3a42P42PccTccC1313AY.330.000868
ORF3a42P42PccTccC1212AY.1110.002198
ORF3a42P42PccTccC1212AY.1160.003441
ORF3a42P42PccTccG1212B.1.1.330.005051
ORF3a42P42PccTccC1111AY.980.000869
ORF3a42P42PccTccC1010AY.50.000206
ORF3a42P42PccTccC88AY.120.10.002568
ORF3a42P42PccTccC88AY.60.000329
ORF3a42P42PccTccC77AY.840.003062
ORF3a42P42PccTccC77B.1.177.750.007284
ORF3a42P42PccTccC66B.1.1.2220.001224
ORF3a42P42PccTccG35AY.4.20.000065
ORF3a42P42PccTccA25AY.4.20.000043
ORF3a42P42PccTccC55AY.46.40.000823
ORF3a42P42PccTccC55AY.530.001438
ORF3a42P42PccTccC35B.1.10.000054
ORF3a42P42PccTccA15B.1.10.000018
ORF3a42P42PccTccG15B.1.10.000018
ORF3a42P42PccTccA55B.1.2340.00066
ORF3a42P42PccTccC44AY.1180.000251
ORF3a42P42PccTccC44AY.1190.000141
ORF3a42P42PccTccC44AY.360.000593
ORF3a42P42PccTccC44B.1.2210.000284
ORF3a42P42PccTccC44B.1.617.10.000516
ORF3a42P42PccTccC33AY.1100.000338
ORF3a42P42PccTccC33AY.4.50.000322
ORF3a42P42PccTccC33AY.410.000882
ORF3a42P42PccTccC33AY.5.40.00083
ORF3a42P42PccTccC23AY.740.000231
ORF3a42P42PccTccA13AY.740.000116
ORF3a42P42PccTccC33AY.870.002498
ORF3a42P42PccTccC33AY.9.20.00011
ORF3a42P42PccTccC33AY.930.000819
ORF3a42P42PccTccC33B.1.1.1150.026786
ORF3a42P42PccTccG33B.1.1.2580.009772
ORF3a42P42PccTccA33D.20.000225
ORF3a42P42PccTccC33P.10.000047
ORF3a42P42PccTccG23P.20.000373
ORF3a42P42PccTccC13P.20.000187
ORF3a42P42PccTccC33Q.80.000495
ORF3a42P42PccTccC22AY.10.000791
ORF3a42P42PccTccC22AY.1050.001286
ORF3a42P42PccTccC22AY.1210.000271
ORF3a42P42PccTccG12AY.270.000065
ORF3a42P42PccTccC12AY.270.000065
ORF3a42P42PccTccC22AY.340.000194
ORF3a42P42PccTccC22AY.46.10.002053
ORF3a42P42PccTccC22AY.5.30.000675
ORF3a42P42PccTccC22AY.680.000547
ORF3a42P42PccTccC22AY.700.000417
ORF3a42P42PccTccC22AY.750.000112
ORF3a42P42PccTccC22AY.75.10.000361
ORF3a42P42PccTccC22AY.780.003082
ORF3a42P42PccTccC22AY.960.004149
ORF3a42P42PccTccC22B.1.1.2880.003831
ORF3a42P42PccTccC22B.1.177.210.000153
ORF3a42P42PccTccC22B.1.177.410.005
ORF3a42P42PccTccC22B.1.3510.000059
ORF3a42P42PccTccG11A.20.000662
ORF3a42P42PccTccC11A.270.001656
ORF3a42P42PccTccC11AY.1000.000046
ORF3a42P42PccTccA11AY.1070.000466
ORF3a42P42PccTccC11AY.1140.000231
ORF3a42P42PccTccC11AY.160.00038
ORF3a42P42PccTccC11AY.190.00114
ORF3a42P42PccTccC11AY.260.000028
ORF3a42P42PccTccC11AY.290.000016
ORF3a42P42PccTccC11AY.420.00004
ORF3a42P42PccTccC11AY.46.20.000635
ORF3a42P42PccTccC11AY.46.60.000072
ORF3a42P42PccTccG11AY.470.000031
ORF3a42P42PccTccC11AY.480.000465
ORF3a42P42PccTccC11AY.490.003195
ORF3a42P42PccTccC11AY.500.000799
ORF3a42P42PccTccC11AY.550.000917
ORF3a42P42PccTccC11AY.570.000656
ORF3a42P42PccTccC11AY.580.000907
ORF3a42P42PccTccC11AY.610.000105
ORF3a42P42PccTccC11AY.670.000464
ORF3a42P42PccTccC11AY.710.000475
ORF3a42P42PccTccC11AY.890.004902
ORF3a42P42PccTccC11AY.920.000287
ORF3a42P42PccTccG11AY.940.000443
ORF3a42P42PccTccC11AY.990.001049
ORF3a42P42PccTccA11AY.99.20.000092
ORF3a42P42PccTccA11B0.000128
ORF3a42P42PccTccC11B.1.1.1920.002309
ORF3a42P42PccTccC11B.1.1.3550.015385
ORF3a42P42PccTccC11B.1.1.3690.000446
ORF3a42P42PccTccC11B.1.1.3710.010417
ORF3a42P42PccTccC11B.1.1.3880.045455
ORF3a42P42PccTccC11B.1.1.390.00051
ORF3a42P42PccTccC11B.1.1600.000031
ORF3a42P42PccTccA11B.1.177.100.000878
ORF3a42P42PccTccC11B.1.177.810.000189
ORF3a42P42PccTccC11B.1.2100.002132
ORF3a42P42PccTccC11B.1.36.390.002217
ORF3a42P42PccTccC11B.1.3670.000792
ORF3a42P42PccTccC11B.1.5960.000087
ORF3a42P42PccTccA11B.1.6210.000089
ORF3a42P42PccTccC11C.2.10.006667
ORF3a42P42PccTccC11C.370.000116