CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = P42L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a42P42LnonsyncCtcTt64133641110.99965725516-25518
ORF3a42P42LnonsyncCTcTC64133210.00032744525516-25518
ORF3a42P42LnonsyncCTcTA6413310.000015592625516-25518

Details of the mutation P42L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a42P42LcCtcTt6411164133All0.012262
ORF3a42P42LcCTcTC2164133All0.000004
ORF3a42P42LcCTcTA164133All0
ORF3a42P42LcCtcTt4183541852B.1.5260.983312
ORF3a42P42LcCTcTC1641852B.1.5260.000376
ORF3a42P42LcCTcTA141852B.1.5260.000024
ORF3a42P42LcCtcTt1341213417B.1.6370.980051
ORF3a42P42LcCTcTC513417B.1.6370.000365
ORF3a42P42LcCtcTt21212121AY.1030.013169
ORF3a42P42LcCtcTt12141214B.10.01112
ORF3a42P42LcCtcTt10601060AY.40.00165
ORF3a42P42LcCtcTt924924B.1.1.70.000827
ORF3a42P42LcCtcTt316316AY.250.001901
ORF3a42P42LcCtcTt224224B.1.617.20.000843
ORF3a42P42LcCtcTt214214AY.1200.007956
ORF3a42P42LcCtcTt194194AY.9.20.007126
ORF3a42P42LcCtcTt150150B.1.10.002721
ORF3a42P42LcCtcTt144144AY.30.001432
ORF3a42P42LcCtcTt118118AY.260.003341
ORF3a42P42LcCtcTt107107AY.430.000474
ORF3a42P42LcCtcTt9999B.1.1770.001304
ORF3a42P42LcCtcTt9595AY.1090.070266
ORF3a42P42LcCtcTt9393AY.390.002298
ORF3a42P42LcCtcTt9090AY.60.003702
ORF3a42P42LcCtcTt8989B.1.20.000784
ORF3a42P42LcCtcTt8888AY.290.001388
ORF3a42P42LcCtcTt7373P.10.00115
ORF3a42P42LcCtcTt7171B.1.5610.028186
ORF3a42P42LcCtcTt5050AY.1190.001765
ORF3a42P42LcCtcTt4646B.1.3510.001367
ORF3a42P42LcCtcTt4040A0.01548
ORF3a42P42LcCtcTt4040AY.440.000243
ORF3a42P42LcCtcTt3939B.1.6230.020923
ORF3a42P42LcCtcTt3838AY.99.20.003502
ORF3a42P42LcCtcTt3636AY.200.001399
ORF3a42P42LcCtcTt3636P.1.70.011494
ORF3a42P42LcCtcTt3333AY.1170.002789
ORF3a42P42LcCtcTt3333B.1.3460.04325
ORF3a42P42LcCtcTt2727AY.1010.013242
ORF3a42P42LcCtcTt2727B.1.1600.000842
ORF3a42P42LcCtcTt2626AY.450.003164
ORF3a42P42LcCtcTt2626B.1.177.320.035088
ORF3a42P42LcCtcTt2525AY.4.20.000542
ORF3a42P42LcCtcTt2525B0.003195
ORF3a42P42LcCtcTt2525B.1.4020.245098
ORF3a42P42LcCtcTt2424B.1.177.730.01359
ORF3a42P42LcCtcTt2222B.1.177.70.003627
ORF3a42P42LcCtcTt2222B.1.4290.000518
ORF3a42P42LcCtcTt2121AY.340.002036
ORF3a42P42LcCtcTt2121B.1.1.3120.040153
ORF3a42P42LcCtcTt2121B.1.264.11
ORF3a42P42LcCtcTt1919B.1.1.5070.165217
ORF3a42P42LcCtcTt1818AY.350.004195
ORF3a42P42LcCtcTt1616AY.116.10.004983
ORF3a42P42LcCtcTt1515B.1.5960.001307
ORF3a42P42LcCtcTt1515P.1.170.002426
ORF3a42P42LcCtcTt1414B.1.1.100.015608
ORF3a42P42LcCtcTt1414B.1.2400.003018
ORF3a42P42LcCtcTt1414Q.10.001769
ORF3a42P42LcCtcTt1313AY.1000.000598
ORF3a42P42LcCtcTt1313AY.470.000404
ORF3a42P42LcCtcTt1212AY.1020.000318
ORF3a42P42LcCtcTt1212B.1.1.5190.000477
ORF3a42P42LcCtcTt1212B.1.466.20.004695
ORF3a42P42LcCtcTt1111B.1.3990.021277
ORF3a42P42LcCtcTt1010AY.140.00088
ORF3a42P42LcCtcTt1010AY.39.10.000396
ORF3a42P42LcCtcTt1010AY.5.40.002767
ORF3a42P42LcCtcTt1010C.370.001161
ORF3a42P42LcCtcTt1010P.1.100.002695
ORF3a42P42LcCtcTt99AY.46.50.001786
ORF3a42P42LcCtcTt99AY.50.000186
ORF3a42P42LcCtcTt88B.1.110.30.005747
ORF3a42P42LcCtcTt88B.1.214.20.004796
ORF3a42P42LcCtcTt88B.1.6210.000708
ORF3a42P42LcCtcTt88P.1.140.000382
ORF3a42P42LcCtcTt77AY.460.000729
ORF3a42P42LcCtcTt77B.1.1.390.003568
ORF3a42P42LcCtcTt77B.1.5540.030837
ORF3a42P42LcCtcTt77B.1.617.10.000903
ORF3a42P42LcCtcTt66AY.620.002614
ORF3a42P42LcCtcTt66B.1.2430.000418
ORF3a42P42LcCtcTt66B.1.6250.014118
ORF3a42P42LcCtcTt66B.1.6360.040268
ORF3a42P42LcCtcTt55AY.1100.000563
ORF3a42P42LcCtcTt55AY.330.000334
ORF3a42P42LcCtcTt55B.1.1.2200.009294
ORF3a42P42LcCtcTt55B.1.2210.000355
ORF3a42P42LcCtcTt55B.1.4270.000252
ORF3a42P42LcCtcTt55B.1.5440.03012
ORF3a42P42LcCtcTt55P.20.000933
ORF3a42P42LcCtcTt55Q.80.000825
ORF3a42P42LcCtcTt44AD.20.000876
ORF3a42P42LcCtcTt44AY.1180.000251
ORF3a42P42LcCtcTt44AY.1210.000541
ORF3a42P42LcCtcTt44AY.230.000279
ORF3a42P42LcCtcTt44AY.550.00367
ORF3a42P42LcCtcTt44AY.750.000224
ORF3a42P42LcCtcTt44AY.850.001709
ORF3a42P42LcCtcTt44AY.98.10.000194
ORF3a42P42LcCtcTt44B.1.1.4160.00362
ORF3a42P42LcCtcTt44B.1.177.420.003578
ORF3a42P42LcCtcTt44B.1.258.170.000416
ORF3a42P42LcCtcTt44B.1.36.70.016
ORF3a42P42LcCtcTt44B.1.6180.016129
ORF3a42P42LcCtcTt44D.20.0003
ORF3a42P42LcCtcTt44N.60.028369
ORF3a42P42LcCtcTt44P.1.10.001271
ORF3a42P42LcCtcTt33AY.270.000194
ORF3a42P42LcCtcTt33AY.320.001597
ORF3a42P42LcCtcTt33AY.420.000121
ORF3a42P42LcCtcTt33AY.600.002814
ORF3a42P42LcCtcTt33AY.610.000314
ORF3a42P42LcCtcTt33B.1.1.3160.002775
ORF3a42P42LcCtcTt33B.1.1.3170.001235
ORF3a42P42LcCtcTt33B.1.1.630.001157
ORF3a42P42LcCtcTt33B.1.3240.004815
ORF3a42P42LcCtcTt33B.1.5330.028846
ORF3a42P42LcCtcTt33B.1.5490.021583
ORF3a42P42LcCtcTt33B.1.5750.00091
ORF3a42P42LcCtcTt33B.1.6280.001057
ORF3a42P42LcCtcTt33B.400.001093
ORF3a42P42LcCtcTt22A.23.10.001408
ORF3a42P42LcCtcTt22AY.1130.000285
ORF3a42P42LcCtcTt22AY.130.000322
ORF3a42P42LcCtcTt22AY.16.10.00094
ORF3a42P42LcCtcTt22AY.280.003781
ORF3a42P42LcCtcTt22AY.300.000791
ORF3a42P42LcCtcTt22AY.480.00093
ORF3a42P42LcCtcTt22AY.530.000575
ORF3a42P42LcCtcTt22AY.690.000373
ORF3a42P42LcCtcTt22AY.740.000231
ORF3a42P42LcCtcTt22AY.75.10.000361
ORF3a42P42LcCtcTt22AY.880.001768
ORF3a42P42LcCtcTt22AY.900.001369
ORF3a42P42LcCtcTt22AY.910.001461
ORF3a42P42LcCtcTt22AY.960.004149
ORF3a42P42LcCtcTt22AY.980.000158
ORF3a42P42LcCtcTt22B.1.1.2220.000408
ORF3a42P42LcCtcTt22B.1.1.250.001137
ORF3a42P42LcCtcTt22B.1.1.2730.013514
ORF3a42P42LcCtcTt22B.1.1.2770.001517
ORF3a42P42LcCtcTt22B.1.1.3070.005063
ORF3a42P42LcCtcTt22B.1.1.3180.000604
ORF3a42P42LcCtcTt22B.1.1.3690.000892
ORF3a42P42LcCtcTt22B.1.1.5280.009615
ORF3a42P42LcCtcTt22B.1.2140.007326
ORF3a42P42LcCtcTt22B.1.2340.000264
ORF3a42P42LcCtcTt22B.1.2350.005038
ORF3a42P42LcCtcTt22B.1.243.10.044444
ORF3a42P42LcCtcTt22B.1.2800.014286
ORF3a42P42LcCtcTt22B.1.3110.000549
ORF3a42P42LcCtcTt22B.1.3360.004878
ORF3a42P42LcCtcTt22B.1.3560.003454
ORF3a42P42LcCtcTt22B.1.36.180.00084
ORF3a42P42LcCtcTt22B.1.3670.001585
ORF3a42P42LcCtcTt22B.1.3690.00057
ORF3a42P42LcCtcTt22B.1.3750.001639
ORF3a42P42LcCtcTt22B.1.4130.008511
ORF3a42P42LcCtcTt22B.1.438.10.000215
ORF3a42P42LcCtcTt22B.1.5760.001813
ORF3a42P42LcCtcTt22B.1.5770.001375
ORF3a42P42LcCtcTt22B.1.6350.035088
ORF3a42P42LcCtcTt22B.3.10.003317
ORF3a42P42LcCtcTt22P.1.150.000465
ORF3a42P42LcCtcTt11AP.10.001502
ORF3a42P42LcCtcTt11AT.10.005128
ORF3a42P42LcCtcTt11AY.10.000396
ORF3a42P42LcCtcTt11AY.100.00053
ORF3a42P42LcCtcTt11AY.1040.001984
ORF3a42P42LcCtcTt11AY.1050.000643
ORF3a42P42LcCtcTt11AY.1080.001103
ORF3a42P42LcCtcTt11AY.1140.000231
ORF3a42P42LcCtcTt11AY.120.20.001285
ORF3a42P42LcCtcTt11AY.160.00038
ORF3a42P42LcCtcTt11AY.29.10.000221
ORF3a42P42LcCtcTt11AY.3.10.000085
ORF3a42P42LcCtcTt11AY.370.000316
ORF3a42P42LcCtcTt11AY.4.50.000107
ORF3a42P42LcCtcTt11AY.46.20.000635
ORF3a42P42LcCtcTt11AY.46.40.000165
ORF3a42P42LcCtcTt11AY.46.60.000072
ORF3a42P42LcCtcTt11AY.500.000799
ORF3a42P42LcCtcTt11AY.540.000095
ORF3a42P42LcCtcTt11AY.560.001605
ORF3a42P42LcCtcTt11AY.670.000464
ORF3a42P42LcCtcTt11AY.730.000665
ORF3a42P42LcCtcTt11AY.760.004831
ORF3a42P42LcCtcTt11AY.780.001541
ORF3a42P42LcCtcTt11AY.820.001357
ORF3a42P42LcCtcTt11AY.890.004902
ORF3a42P42LcCtcTt11AY.90.000068
ORF3a42P42LcCtcTt11AY.9.10.000084
ORF3a42P42LcCtcTt11AY.920.000287
ORF3a42P42LcCtcTt11AY.950.000761
ORF3a42P42LcCtcTt11B.1.1.1410.002012
ORF3a42P42LcCtcTt11B.1.1.1760.000439
ORF3a42P42LcCtcTt11B.1.1.2430.004082
ORF3a42P42LcCtcTt11B.1.1.2660.012195
ORF3a42P42LcCtcTt11B.1.1.270.00565
ORF3a42P42LcCtcTt11B.1.1.2790.001121
ORF3a42P42LcCtcTt11B.1.1.2940.001266
ORF3a42P42LcCtcTt11B.1.1.3010.001179
ORF3a42P42LcCtcTt11B.1.1.3050.003861
ORF3a42P42LcCtcTt11B.1.1.3060.000438
ORF3a42P42LcCtcTt11B.1.1.3080.011765
ORF3a42P42LcCtcTt11B.1.1.330.000421
ORF3a42P42LcCtcTt11B.1.1.340.013158
ORF3a42P42LcCtcTt11B.1.1.3540.004386
ORF3a42P42LcCtcTt11B.1.1.3720.000689
ORF3a42P42LcCtcTt11B.1.1.4340.000349
ORF3a42P42LcCtcTt11B.1.1.440.00241
ORF3a42P42LcCtcTt11B.1.1.500.000679
ORF3a42P42LcCtcTt11B.1.1.5230.001563
ORF3a42P42LcCtcTt11B.1.1.5240.020833
ORF3a42P42LcCtcTt11B.1.1.700.000341
ORF3a42P42LcCtcTt11B.1.1.890.006061
ORF3a42P42LcCtcTt11B.1.1100.004525
ORF3a42P42LcCtcTt11B.1.1280.000635
ORF3a42P42LcCtcTt11B.1.1570.002985
ORF3a42P42LcCtcTt11B.1.160.230.004831
ORF3a42P42LcCtcTt11B.1.177.350.000691
ORF3a42P42LcCtcTt11B.1.177.570.000281
ORF3a42P42LcCtcTt11B.1.1900.01
ORF3a42P42LcCtcTt11B.1.1950.005025
ORF3a42P42LcCtcTt11B.1.2370.004975
ORF3a42P42LcCtcTt11B.1.2580.000067
ORF3a42P42LcCtcTt11B.1.2930.0125
ORF3a42P42LcCtcTt11B.1.3200.001245
ORF3a42P42LcCtcTt11B.1.3380.008621
ORF3a42P42LcCtcTt11B.1.3500.002933
ORF3a42P42LcCtcTt11B.1.351.20.000303
ORF3a42P42LcCtcTt11B.1.360.000146
ORF3a42P42LcCtcTt11B.1.36.380.001642
ORF3a42P42LcCtcTt11B.1.4280.00102
ORF3a42P42LcCtcTt11B.1.4360.001029
ORF3a42P42LcCtcTt11B.1.4700.001404
ORF3a42P42LcCtcTt11B.1.4970.000315
ORF3a42P42LcCtcTt11B.1.4990.00105
ORF3a42P42LcCtcTt11B.1.5240.001406
ORF3a42P42LcCtcTt11B.1.5250.000113
ORF3a42P42LcCtcTt11B.1.5500.013699
ORF3a42P42LcCtcTt11B.1.5510.00129
ORF3a42P42LcCtcTt11B.1.5580.004566
ORF3a42P42LcCtcTt11B.1.5650.00081
ORF3a42P42LcCtcTt11B.1.5670.003333
ORF3a42P42LcCtcTt11B.1.5680.001111
ORF3a42P42LcCtcTt11B.1.5740.002151
ORF3a42P42LcCtcTt11B.1.5800.004065
ORF3a42P42LcCtcTt11B.1.5950.000261
ORF3a42P42LcCtcTt11B.1.6380.052632
ORF3a42P42LcCtcTt11B.1.90.006173
ORF3a42P42LcCtcTt11B.40.002208
ORF3a42P42LcCtcTt11B.530.011765
ORF3a42P42LcCtcTt11B.550.00295
ORF3a42P42LcCtcTt11C.36.30.000567
ORF3a42P42LcCtcTt11P.1.120.000484
ORF3a42P42LcCtcTt11P.1.130.000898
ORF3a42P42LcCtcTt11P.1.40.000977
ORF3a42P42LcCtcTt11R.10.00009