CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = P25L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a25P25LnonsyncCtcTt415141420.99783225465-25467
ORF3a25P25LnonsyncCTcTC415130.00072271725465-25467
ORF3a25P25LnonsyncCTcTA415130.00072271725465-25467
ORF3a25P25LnonsynCCTTTA415130.00072271725465-25467

Details of the mutation P25L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a25P25LcCtcTt41424151All0.000792
ORF3a25P25LcCTcTC34151All0.000001
ORF3a25P25LCCTTTA34151All0.000001
ORF3a25P25LcCTcTA34151All0.000001
ORF3a25P25LcCtcTt18951895AY.40.002949
ORF3a25P25LcCtcTt541541AY.250.003254
ORF3a25P25LcCtcTt198198B.1.1.70.000177
ORF3a25P25LcCtcTt158158B.1.617.20.000595
ORF3a25P25LcCtcTt123123AY.1030.000764
ORF3a25P25LcCtcTt117117AY.430.000518
ORF3a25P25LcCtcTt9595AY.440.000578
ORF3a25P25LcCtcTt6363B.1.4950.572727
ORF3a25P25LcCtcTt6262AY.1200.002305
ORF3a25P25LcCtcTt5656AY.30.000557
ORF3a25P25LcCtcTt4141B.1.177.80.03085
ORF3a25P25LcCtcTt3535AY.46.60.002527
ORF3a25P25LcCtcTt3535B.10.000321
ORF3a25P25LcCtcTt3434AY.1130.004841
ORF3a25P25LcCtcTt3131AY.290.000489
ORF3a25P25LcCtcTt2828AY.50.000578
ORF3a25P25LcCtcTt2727AY.1100.003043
ORF3a25P25LcCtcTt2525P.1.140.001195
ORF3a25P25LcCtcTt2222AY.260.000623
ORF3a25P25LcCtcTt2222AY.330.001469
ORF3a25P25LcCtcTt2022B.1.4270.00101
ORF3a25P25LcCTcTC222B.1.4270.000101
ORF3a25P25LcCtcTt2121AY.200.000816
ORF3a25P25LcCtcTt2020AY.390.000494
ORF3a25P25LcCtcTt1920B.1.1.5190.000755
ORF3a25P25LcCTcTC120B.1.1.5190.00004
ORF3a25P25LcCtcTt1919AY.4.20.000412
ORF3a25P25LcCtcTt1616AY.1020.000424
ORF3a25P25LcCtcTt1616AY.750.000896
ORF3a25P25LcCtcTt1515AY.1050.009646
ORF3a25P25LcCtcTt1515AY.670.006964
ORF3a25P25LcCtcTt1414AY.60.000576
ORF3a25P25LcCtcTt1414B.1.20.000123
ORF3a25P25LcCtcTt1313AY.550.011927
ORF3a25P25LcCtcTt1212AY.1000.000552
ORF3a25P25LcCtcTt1212AY.39.10.000475
ORF3a25P25LcCtcTt1212AY.7.10.001352
ORF3a25P25LcCtcTt1212P.10.000189
ORF3a25P25LcCtcTt1111AD.20.002409
ORF3a25P25LcCtcTt1111AY.1110.002015
ORF3a25P25LcCtcTt1010B.1.5960.000871
ORF3a25P25LcCtcTt99AY.420.000362
ORF3a25P25LcCtcTt99AY.740.001041
ORF3a25P25LcCtcTt88AY.450.000973
ORF3a25P25LcCtcTt88B.1.6210.000708
ORF3a25P25LcCtcTt88R.10.00072
ORF3a25P25LcCtcTt77AY.470.000218
ORF3a25P25LCCTTTA260.111111
ORF3a25P25LcCTcTA260.111111
ORF3a25P25LcCtcTt260.111111
ORF3a25P25LcCtcTt66AY.3.10.000512
ORF3a25P25LcCtcTt66AY.4.50.000645
ORF3a25P25LcCtcTt55AY.1180.000313
ORF3a25P25LcCtcTt55AY.46.40.000823
ORF3a25P25LcCtcTt55AY.540.000477
ORF3a25P25LcCtcTt55B.1.2210.000355
ORF3a25P25LcCtcTt55B.1.5260.000118
ORF3a25P25LcCtcTt55B.1.617.10.000645
ORF3a25P25LcCtcTt44AY.1140.000924
ORF3a25P25LcCtcTt44B.1.10.000073
ORF3a25P25LcCtcTt44B.1.2740.047619
ORF3a25P25LcCtcTt44B.450.015326
ORF3a25P25LcCtcTt33AY.1190.000106
ORF3a25P25LcCtcTt33AY.270.000194
ORF3a25P25LcCtcTt33AY.300.001187
ORF3a25P25LcCtcTt33AY.360.000445
ORF3a25P25LcCtcTt33AY.5.40.00083
ORF3a25P25LcCtcTt33AY.7.20.001678
ORF3a25P25LcCtcTt33AY.90.000203
ORF3a25P25LcCtcTt33AY.9.10.000251
ORF3a25P25LcCtcTt33AY.9.20.00011
ORF3a25P25LcCtcTt33AY.920.000862
ORF3a25P25LcCtcTt33B.1.1.2750.033708
ORF3a25P25LcCtcTt33B.1.1.3050.011583
ORF3a25P25LcCtcTt33B.1.4290.000071
ORF3a25P25LcCtcTt33B.1.5820.001472
ORF3a25P25LcCtcTt22AY.1010.000981
ORF3a25P25LcCtcTt22AY.1060.00067
ORF3a25P25LcCtcTt22AY.120.000632
ORF3a25P25LcCtcTt22AY.1210.000271
ORF3a25P25LcCtcTt22AY.130.000322
ORF3a25P25LcCtcTt22AY.160.000759
ORF3a25P25LcCtcTt22AY.20.000712
ORF3a25P25LcCtcTt22AY.230.000139
ORF3a25P25LcCtcTt22AY.320.001065
ORF3a25P25LcCtcTt22AY.460.000208
ORF3a25P25LcCtcTt22AY.46.20.001271
ORF3a25P25LcCtcTt22AY.520.001629
ORF3a25P25LcCtcTt22AY.610.00021
ORF3a25P25LcCtcTt22AY.910.001461
ORF3a25P25LcCtcTt22AY.980.000158
ORF3a25P25LcCtcTt22AY.98.10.000097
ORF3a25P25LcCtcTt22AY.99.20.000184
ORF3a25P25LcCtcTt22B.1.1.3620.011236
ORF3a25P25LcCtcTt22B.1.1.700.000682
ORF3a25P25LcCtcTt22B.1.1770.000026
ORF3a25P25LcCtcTt22B.1.177.40.000422
ORF3a25P25LcCtcTt22B.1.177.750.002081
ORF3a25P25LcCtcTt22B.1.177.810.000379
ORF3a25P25LcCtcTt22B.1.2580.000133
ORF3a25P25LcCtcTt22B.1.3510.000059
ORF3a25P25LcCtcTt22B.1.5170.000854
ORF3a25P25LcCtcTt22B.1.621.10.001012
ORF3a25P25LcCtcTt22D.20.00015
ORF3a25P25LcCtcTt11AT.10.005128
ORF3a25P25LcCtcTt11AY.10.000396
ORF3a25P25LcCtcTt11AY.100.00053
ORF3a25P25LcCtcTt11AY.1070.000466
ORF3a25P25LcCtcTt11AY.1090.00074
ORF3a25P25LcCtcTt11AY.120.10.000321
ORF3a25P25LcCtcTt11AY.240.000431
ORF3a25P25LcCtcTt11AY.29.10.000221
ORF3a25P25LcCtcTt11AY.340.000097
ORF3a25P25LcCtcTt11AY.34.10.00051
ORF3a25P25LcCtcTt11AY.380.000499
ORF3a25P25LcCtcTt11AY.410.000294
ORF3a25P25LcCtcTt11AY.46.50.000198
ORF3a25P25LcCtcTt11AY.560.001605
ORF3a25P25LcCtcTt11AY.640.000595
ORF3a25P25LcCtcTt11AY.650.000533
ORF3a25P25LcCtcTt11AY.680.000274
ORF3a25P25LcCtcTt11AY.710.000475
ORF3a25P25LcCtcTt11AY.75.10.00018
ORF3a25P25LcCTcTA11AY.820.001357
ORF3a25P25LcCtcTt11AY.950.000761
ORF3a25P25LcCtcTt11B0.000128
ORF3a25P25LcCtcTt11B.1.1.1760.000439
ORF3a25P25LcCtcTt11B.1.1.2690.001353
ORF3a25P25LcCtcTt11B.1.1.2970.002237
ORF3a25P25LcCtcTt11B.1.1.3180.000302
ORF3a25P25LcCtcTt11B.1.1.330.000421
ORF3a25P25LcCtcTt11B.1.1.3920.052632
ORF3a25P25LcCtcTt11B.1.1.610.008772
ORF3a25P25LcCtcTt11B.1.1.750.010638
ORF3a25P25LcCtcTt11B.1.1100.004525
ORF3a25P25LcCtcTt11B.1.1600.000031
ORF3a25P25LcCtcTt11B.1.3060.005714
ORF3a25P25LcCtcTt11B.1.360.000146
ORF3a25P25LcCtcTt11B.1.36.170.000494
ORF3a25P25LcCtcTt11B.1.36.290.000517
ORF3a25P25LcCtcTt11B.1.36.80.001
ORF3a25P25LcCtcTt11B.1.3750.00082
ORF3a25P25LcCtcTt11B.1.4090.000781
ORF3a25P25LcCtcTt11B.1.466.20.000391
ORF3a25P25LcCtcTt11B.1.4680.005714
ORF3a25P25LCCTTTA11B.1.5770.000687
ORF3a25P25LcCtcTt11B.1.595.10.005848
ORF3a25P25LcCtcTt11B.1.6200.000946
ORF3a25P25LcCtcTt11C.370.000116
ORF3a25P25LcCtcTt11P.20.000187
ORF3a25P25LcCtcTt11Q.30.000145