CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = P240S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a240P240SnonsynCctTct17374173720.99988526110-26112
ORF3a240P240SnonsynCcTTcC1737420.00011511526110-26112

Details of the mutation P240S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a240P240SCctTct1737217374All0.003323
ORF3a240P240SCcTTcC217374All0
ORF3a240P240SCctTct1152511525B.1.1.70.010317
ORF3a240P240SCctTct669669AY.30.006654
ORF3a240P240SCctTct516516AY.40.000803
ORF3a240P240SCctTct426426B.10.003902
ORF3a240P240SCctTct390390B.1.2400.08407
ORF3a240P240SCctTct313313AY.1190.011051
ORF3a240P240SCctTct258258Q.80.042546
ORF3a240P240SCctTct246246B.1.617.20.000926
ORF3a240P240SCctTct208208AY.490.664537
ORF3a240P240SCctTct157157AY.1030.000975
ORF3a240P240SCctTct152152P.10.002395
ORF3a240P240SCctTct147148AY.250.000884
ORF3a240P240SCcTTcC1148AY.250.000006
ORF3a240P240SCctTct134134B.1.10.002431
ORF3a240P240SCctTct126126AY.430.000558
ORF3a240P240SCctTct126126B.1.20.001109
ORF3a240P240SCctTct116116B.1.1.2190.58
ORF3a240P240SCctTct102102B.1.5710.990291
ORF3a240P240SCctTct8787AY.440.00053
ORF3a240P240SCctTct7474Q.30.010732
ORF3a240P240SCctTct6262B.1.1770.000816
ORF3a240P240SCctTct6060AY.46.20.038119
ORF3a240P240SCctTct5252AY.290.00082
ORF3a240P240SCctTct4848B.1.2210.00341
ORF3a240P240SCctTct4747B.1.1600.001466
ORF3a240P240SCctTct4444AY.50.000909
ORF3a240P240SCctTct4141B.1.2580.002728
ORF3a240P240SCctTct4040B.1.3510.001189
ORF3a240P240SCctTct3536AY.230.002441
ORF3a240P240SCcTTcC136AY.230.00007
ORF3a240P240SCctTct3434B.1.2340.004486
ORF3a240P240SCctTct3434B.1.6390.73913
ORF3a240P240SCctTct3232AY.1180.002005
ORF3a240P240SCctTct3030B.1.4270.001515
ORF3a240P240SCctTct2929AY.4.20.000629
ORF3a240P240SCctTct2828B.1.1.5190.001112
ORF3a240P240SCctTct2626Q.10.003284
ORF3a240P240SCctTct2525B.1.177.810.004733
ORF3a240P240SCctTct2323AY.260.000651
ORF3a240P240SCctTct2222AY.390.000544
ORF3a240P240SCctTct2222B.1.2430.001531
ORF3a240P240SCctTct2121AY.200.000816
ORF3a240P240SCctTct1919B.1.4290.000447
ORF3a240P240SCctTct1818A.270.029801
ORF3a240P240SCctTct1717AY.1170.001437
ORF3a240P240SCctTct1717AY.470.000529
ORF3a240P240SCctTct1717B.1.1.2160.015138
ORF3a240P240SCctTct1717B.1.6370.001242
ORF3a240P240SCctTct1616AY.1020.000424
ORF3a240P240SCctTct1616AY.540.001526
ORF3a240P240SCctTct1616AY.980.001264
ORF3a240P240SCctTct1616B.1.1.280.00498
ORF3a240P240SCctTct1414AY.460.001457
ORF3a240P240SCctTct1414B.1.1.2140.000776
ORF3a240P240SCctTct1414B.1.177.730.007928
ORF3a240P240SCctTct1313B.1.5260.000306
ORF3a240P240SCctTct1212AY.1140.002773
ORF3a240P240SCctTct1212AY.1210.001624
ORF3a240P240SCctTct1212AY.160.004556
ORF3a240P240SCctTct1212B.1.177.210.000918
ORF3a240P240SCctTct1212B.1.177.620.014303
ORF3a240P240SCctTct1212B.1.4970.003777
ORF3a240P240SCctTct1111B.1.1.630.004244
ORF3a240P240SCctTct1111B.1.177.790.025761
ORF3a240P240SCctTct1111B.1.258.170.001144
ORF3a240P240SCctTct1111B.1.36.290.005691
ORF3a240P240SCctTct1111P.1.100.002964
ORF3a240P240SCctTct1010B.1.1.2220.00204
ORF3a240P240SCctTct1010B.1.177.120.001517
ORF3a240P240SCctTct99AY.1000.000414
ORF3a240P240SCctTct99B.1.1.3160.008326
ORF3a240P240SCctTct99B.1.438.10.000965
ORF3a240P240SCctTct99B.1.5960.000784
ORF3a240P240SCctTct99B.1.6090.004314
ORF3a240P240SCctTct99C.370.001045
ORF3a240P240SCctTct88B.1.1.4640.011782
ORF3a240P240SCctTct77AY.360.001037
ORF3a240P240SCctTct77AY.750.000392
ORF3a240P240SCctTct77B.1.4660.162791
ORF3a240P240SCctTct77B.1.617.10.000903
ORF3a240P240SCctTct77B.1.6210.00062
ORF3a240P240SCctTct77P.1.20.008092
ORF3a240P240SCctTct66AY.130.000966
ORF3a240P240SCctTct66AZ.20.004926
ORF3a240P240SCctTct66B.1.1.330.002525
ORF3a240P240SCctTct66B.1.1280.003812
ORF3a240P240SCctTct66B.1.3690.001711
ORF3a240P240SCctTct66B.1.4620.043478
ORF3a240P240SCctTct66B.1.5950.001566
ORF3a240P240SCctTct55AY.1200.000186
ORF3a240P240SCctTct55AY.240.002155
ORF3a240P240SCctTct55B.1.1.3490.051546
ORF3a240P240SCctTct55B.1.360.00073
ORF3a240P240SCctTct44B0.000511
ORF3a240P240SCctTct44B.1.1.390.002039
ORF3a240P240SCctTct44B.1.2100.008529
ORF3a240P240SCctTct44B.1.214.20.002398
ORF3a240P240SCctTct44B.1.3960.002823
ORF3a240P240SCctTct44B.1.5170.001708
ORF3a240P240SCctTct44B.1.5750.001214
ORF3a240P240SCctTct44B.1.5760.003626
ORF3a240P240SCctTct44B.1.6280.001409
ORF3a240P240SCctTct33AY.3.10.000256
ORF3a240P240SCctTct33AY.330.0002
ORF3a240P240SCctTct33AY.34.10.00153
ORF3a240P240SCctTct33AY.420.000121
ORF3a240P240SCctTct33AY.450.000365
ORF3a240P240SCctTct33AY.5.40.00083
ORF3a240P240SCctTct33AY.610.000314
ORF3a240P240SCctTct33AY.840.001312
ORF3a240P240SCctTct33AY.9.20.00011
ORF3a240P240SCctTct33AY.920.000862
ORF3a240P240SCctTct33AY.99.20.000276
ORF3a240P240SCctTct33B.1.1.250.001706
ORF3a240P240SCctTct33B.1.1.3060.001315
ORF3a240P240SCctTct33B.1.1.3170.001235
ORF3a240P240SCctTct33B.1.1.3180.000905
ORF3a240P240SCctTct33B.1.1.3260.005282
ORF3a240P240SCctTct33B.1.1.4200.003018
ORF3a240P240SCctTct33B.1.1110.003525
ORF3a240P240SCctTct33B.1.36.180.001261
ORF3a240P240SCctTct33B.1.4250.008982
ORF3a240P240SCctTct33B.1.466.20.001174
ORF3a240P240SCctTct33B.1.5640.001278
ORF3a240P240SCctTct33D.20.000225
ORF3a240P240SCctTct33K.20.12
ORF3a240P240SCctTct33L.30.010638
ORF3a240P240SCctTct33P.1.170.000485
ORF3a240P240SCctTct33P.1.70.000958
ORF3a240P240SCctTct33P.20.00056
ORF3a240P240SCctTct22A.230.021053
ORF3a240P240SCctTct22AY.1050.001286
ORF3a240P240SCctTct22AY.1100.000225
ORF3a240P240SCctTct22AY.1160.000574
ORF3a240P240SCctTct22AY.220.004184
ORF3a240P240SCctTct22AY.270.000129
ORF3a240P240SCctTct22AY.29.10.000441
ORF3a240P240SCctTct22AY.320.001065
ORF3a240P240SCctTct22AY.39.10.000079
ORF3a240P240SCctTct22AY.46.40.000329
ORF3a240P240SCctTct22AY.46.60.000144
ORF3a240P240SCctTct22AY.60.000082
ORF3a240P240SCctTct22AY.650.001066
ORF3a240P240SCctTct22AY.680.000547
ORF3a240P240SCctTct22AY.7.10.000225
ORF3a240P240SCctTct22AY.9.10.000167
ORF3a240P240SCctTct22AY.930.000546
ORF3a240P240SCctTct22AY.98.10.000097
ORF3a240P240SCctTct22B.1.1.1210.004854
ORF3a240P240SCctTct22B.1.1.1760.000879
ORF3a240P240SCctTct22B.1.1.2050.007435
ORF3a240P240SCctTct22B.1.1.2890.004167
ORF3a240P240SCctTct22B.1.1.3110.000716
ORF3a240P240SCctTct22B.1.1.4870.011173
ORF3a240P240SCctTct22B.1.1430.042553
ORF3a240P240SCctTct22B.1.160.320.008584
ORF3a240P240SCctTct22B.1.1950.01005
ORF3a240P240SCctTct22B.1.2080.08
ORF3a240P240SCctTct22B.1.2320.001075
ORF3a240P240SCctTct22B.1.3250.013793
ORF3a240P240SCctTct22B.1.36.270.001527
ORF3a240P240SCctTct22B.1.4000.000858
ORF3a240P240SCctTct22B.1.4040.002604
ORF3a240P240SCctTct22B.1.4800.004975
ORF3a240P240SCctTct22B.1.4990.002101
ORF3a240P240SCctTct22B.1.5320.012422
ORF3a240P240SCctTct22B.1.575.10.004878
ORF3a240P240SCctTct22P.1.140.000096
ORF3a240P240SCctTct22Q.70.002222
ORF3a240P240SCctTct22R.10.00018
ORF3a240P240SCctTct22S.10.009901
ORF3a240P240SCctTct11A0.000387
ORF3a240P240SCctTct11A.2.20.001689
ORF3a240P240SCctTct11A.2.50.000499
ORF3a240P240SCctTct11A.2.5.10.004808
ORF3a240P240SCctTct11AE.10.011364
ORF3a240P240SCctTct11AM.20.111111
ORF3a240P240SCctTct11AV.10.005051
ORF3a240P240SCctTct11AY.10.000396
ORF3a240P240SCctTct11AY.100.00053
ORF3a240P240SCctTct11AY.1040.001984
ORF3a240P240SCctTct11AY.1110.000183
ORF3a240P240SCctTct11AY.1130.000142
ORF3a240P240SCctTct11AY.140.000088
ORF3a240P240SCctTct11AY.16.10.00047
ORF3a240P240SCctTct11AY.190.00114
ORF3a240P240SCctTct11AY.20.000356
ORF3a240P240SCctTct11AY.23.10.000417
ORF3a240P240SCctTct11AY.300.000396
ORF3a240P240SCctTct11AY.5.30.000337
ORF3a240P240SCctTct11AY.530.000288
ORF3a240P240SCctTct11AY.620.000436
ORF3a240P240SCctTct11AY.630.000387
ORF3a240P240SCctTct11AY.730.000665
ORF3a240P240SCctTct11AY.75.10.00018
ORF3a240P240SCctTct11AY.850.000427
ORF3a240P240SCctTct11AY.870.000833
ORF3a240P240SCctTct11AY.950.000761
ORF3a240P240SCctTct11B.1.1.1410.002012
ORF3a240P240SCctTct11B.1.1.1600.02381
ORF3a240P240SCctTct11B.1.1.1810.004545
ORF3a240P240SCctTct11B.1.1.1890.001513
ORF3a240P240SCctTct11B.1.1.2100.005714
ORF3a240P240SCctTct11B.1.1.2210.010101
ORF3a240P240SCctTct11B.1.1.2580.003257
ORF3a240P240SCctTct11B.1.1.2650.003155
ORF3a240P240SCctTct11B.1.1.2790.001121
ORF3a240P240SCctTct11B.1.1.2970.002237
ORF3a240P240SCctTct11B.1.1.3050.003861
ORF3a240P240SCctTct11B.1.1.3310.011628
ORF3a240P240SCctTct11B.1.1.3350.012987
ORF3a240P240SCctTct11B.1.1.3480.000796
ORF3a240P240SCctTct11B.1.1.3540.004386
ORF3a240P240SCctTct11B.1.1.3850.004464
ORF3a240P240SCctTct11B.1.1.3970.002252
ORF3a240P240SCctTct11B.1.1.4090.002833
ORF3a240P240SCctTct11B.1.1.4290.004608
ORF3a240P240SCctTct11B.1.1.4860.001577
ORF3a240P240SCctTct11B.1.1.500.000679
ORF3a240P240SCctTct11B.1.1.5070.008696
ORF3a240P240SCctTct11B.1.1.5210.005348
ORF3a240P240SCctTct11B.1.1.5250.005464
ORF3a240P240SCctTct11B.1.1.5260.003546
ORF3a240P240SCctTct11B.1.1.5280.004808
ORF3a240P240SCctTct11B.1.1.700.000341
ORF3a240P240SCctTct11B.1.1470.000756
ORF3a240P240SCctTct11B.1.160.100.008065
ORF3a240P240SCctTct11B.1.177.240.001295
ORF3a240P240SCctTct11B.1.177.320.00135
ORF3a240P240SCctTct11B.1.177.350.000691
ORF3a240P240SCctTct11B.1.177.40.000211
ORF3a240P240SCctTct11B.1.177.440.000519
ORF3a240P240SCctTct11B.1.177.520.001757
ORF3a240P240SCctTct11B.1.177.690.001484
ORF3a240P240SCctTct11B.1.177.820.000477
ORF3a240P240SCctTct11B.1.2390.001221
ORF3a240P240SCctTct11B.1.258.140.00098
ORF3a240P240SCctTct11B.1.2640.012346
ORF3a240P240SCctTct11B.1.351.20.000303
ORF3a240P240SCctTct11B.1.351.30.000876
ORF3a240P240SCctTct11B.1.36.350.002604
ORF3a240P240SCctTct11B.1.36.390.002217
ORF3a240P240SCctTct11B.1.36.70.004
ORF3a240P240SCctTct11B.1.36.80.001
ORF3a240P240SCctTct11B.1.362.20.004717
ORF3a240P240SCctTct11B.1.3750.00082
ORF3a240P240SCctTct11B.1.3820.008929
ORF3a240P240SCctTct11B.1.4080.00369
ORF3a240P240SCctTct11B.1.4110.003704
ORF3a240P240SCctTct11B.1.416.10.001563
ORF3a240P240SCctTct11B.1.4260.001009
ORF3a240P240SCctTct11B.1.4510.008197
ORF3a240P240SCctTct11B.1.4680.005714
ORF3a240P240SCctTct11B.1.4740.001901
ORF3a240P240SCctTct11B.1.5250.000113
ORF3a240P240SCctTct11B.1.5510.00129
ORF3a240P240SCctTct11B.1.564.10.001577
ORF3a240P240SCctTct11B.1.5650.00081
ORF3a240P240SCctTct11B.1.5680.001111
ORF3a240P240SCctTct11B.1.5770.000687
ORF3a240P240SCctTct11B.1.5820.000491
ORF3a240P240SCctTct11B.1.6060.006024
ORF3a240P240SCctTct11B.1.6190.000871
ORF3a240P240SCctTct11B.1.6200.000946
ORF3a240P240SCctTct11B.1.6310.003367
ORF3a240P240SCctTct11B.1.80.001972
ORF3a240P240SCctTct11B.1.930.000934
ORF3a240P240SCctTct11B.280.003279
ORF3a240P240SCctTct11B.30.000831
ORF3a240P240SCctTct11B.400.000364
ORF3a240P240SCctTct11B.60.00091
ORF3a240P240SCctTct11C.350.000774
ORF3a240P240SCctTct11C.360.000911
ORF3a240P240SCctTct11P.1.120.000484
ORF3a240P240SCctTct11P.1.150.000232
ORF3a240P240SCctTct11P.1.60.001946
ORF3a240P240SCctTct11P.30.001595

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.