CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 104 | P104L | nonsyn | cCt | cTt | 14679 | 14665 | 0.999046 | 25702-25704 | |
ORF3a | 104 | P104L | nonsyn | cCT | cTC | 14679 | 7 | 0.000476872 | 25702-25704 | |
ORF3a | 104 | P104L | nonsyn | cCT | cTA | 14679 | 3 | 0.000204374 | 25702-25704 | |
ORF3a | 104 | P104L | nonsyn | CCT | TTA | 14679 | 2 | 0.000136249 | 25702-25704 | |
ORF3a | 104 | P104L | nonsyn | cCT | cTG | 14679 | 2 | 0.000136249 | 25702-25704 |
Details of the mutation P104L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 104 | P104L | cCt | cTt | 14665 | 14679 | All | 0.002805 |
ORF3a | 104 | P104L | cCT | cTC | 7 | 14679 | All | 0.000001 |
ORF3a | 104 | P104L | cCT | cTA | 3 | 14679 | All | 0.000001 |
ORF3a | 104 | P104L | cCT | cTG | 2 | 14679 | All | 0 |
ORF3a | 104 | P104L | CCT | TTA | 2 | 14679 | All | 0 |
ORF3a | 104 | P104L | cCt | cTt | 8482 | 8488 | B.1.637 | 0.619803 |
ORF3a | 104 | P104L | cCT | cTC | 6 | 8488 | B.1.637 | 0.000438 |
ORF3a | 104 | P104L | cCt | cTt | 1500 | 1500 | B.1.526 | 0.035257 |
ORF3a | 104 | P104L | cCt | cTt | 1155 | 1155 | B.1.1.7 | 0.001034 |
ORF3a | 104 | P104L | cCt | cTt | 463 | 463 | AY.4 | 0.000721 |
ORF3a | 104 | P104L | cCt | cTt | 458 | 459 | B.1 | 0.004195 |
ORF3a | 104 | P104L | cCT | cTA | 1 | 459 | B.1 | 0.000009 |
ORF3a | 104 | P104L | cCt | cTt | 297 | 297 | B.1.1.4 | 0.883929 |
ORF3a | 104 | P104L | cCt | cTt | 231 | 231 | B.1.177 | 0.003042 |
ORF3a | 104 | P104L | cCt | cTt | 214 | 214 | AY.44 | 0.001303 |
ORF3a | 104 | P104L | cCt | cTt | 158 | 158 | AY.25 | 0.00095 |
ORF3a | 104 | P104L | cCt | cTt | 139 | 139 | B.1.617.2 | 0.000523 |
ORF3a | 104 | P104L | cCt | cTt | 91 | 91 | B.1.2 | 0.000801 |
ORF3a | 104 | P104L | cCt | cTt | 88 | 88 | P.1 | 0.001386 |
ORF3a | 104 | P104L | cCt | cTt | 85 | 85 | B.1.429 | 0.002 |
ORF3a | 104 | P104L | cCt | cTt | 66 | 66 | AY.43 | 0.000292 |
ORF3a | 104 | P104L | cCt | cTt | 47 | 47 | B.1.1.353 | 0.979167 |
ORF3a | 104 | P104L | cCt | cTt | 47 | 47 | B.1.177.60 | 0.010266 |
ORF3a | 104 | P104L | cCt | cTt | 44 | 44 | AY.3 | 0.000438 |
ORF3a | 104 | P104L | cCt | cTt | 44 | 44 | B.1.221 | 0.003125 |
ORF3a | 104 | P104L | cCt | cTt | 41 | 41 | B.1.1 | 0.000744 |
ORF3a | 104 | P104L | cCt | cTt | 39 | 39 | B.1.1.486 | 0.061514 |
ORF3a | 104 | P104L | cCt | cTt | 34 | 34 | AY.103 | 0.000211 |
ORF3a | 104 | P104L | cCt | cTt | 30 | 30 | AY.102 | 0.000795 |
ORF3a | 104 | P104L | cCt | cTt | 29 | 29 | P.1.14 | 0.001386 |
ORF3a | 104 | P104L | cCt | cTt | 27 | 27 | B.1.177.4 | 0.005699 |
ORF3a | 104 | P104L | cCt | cTt | 27 | 27 | B.1.525 | 0.003055 |
ORF3a | 104 | P104L | cCt | cTt | 26 | 26 | D.2 | 0.001951 |
ORF3a | 104 | P104L | cCt | cTt | 25 | 25 | AY.20 | 0.000972 |
ORF3a | 104 | P104L | cCt | cTt | 23 | 23 | AY.120.2.1 | 0.01146 |
ORF3a | 104 | P104L | cCt | cTt | 22 | 22 | AY.39 | 0.000544 |
ORF3a | 104 | P104L | cCt | cTt | 22 | 22 | AY.61 | 0.002305 |
ORF3a | 104 | P104L | cCt | cTt | 22 | 22 | B.1.320 | 0.027397 |
ORF3a | 104 | P104L | cCt | cTt | 20 | 20 | B.1.1.519 | 0.000794 |
ORF3a | 104 | P104L | cCt | cTt | 20 | 20 | B.1.351 | 0.000595 |
ORF3a | 104 | P104L | cCt | cTt | 19 | 19 | AY.100 | 0.000874 |
ORF3a | 104 | P104L | cCt | cTt | 18 | 18 | AY.120 | 0.000669 |
ORF3a | 104 | P104L | cCt | cTt | 16 | 16 | AY.106 | 0.005358 |
ORF3a | 104 | P104L | cCt | cTt | 15 | 15 | B.1.1.302 | 0.03112 |
ORF3a | 104 | P104L | cCt | cTt | 15 | 15 | B.1.160 | 0.000468 |
ORF3a | 104 | P104L | cCt | cTt | 14 | 14 | AY.119 | 0.000494 |
ORF3a | 104 | P104L | cCt | cTt | 14 | 14 | AY.29 | 0.000221 |
ORF3a | 104 | P104L | cCt | cTt | 14 | 14 | B.1.177.7 | 0.002308 |
ORF3a | 104 | P104L | cCt | cTt | 14 | 14 | P.2 | 0.002613 |
ORF3a | 104 | P104L | cCt | cTt | 13 | 13 | AY.84 | 0.005687 |
ORF3a | 104 | P104L | cCt | cTt | 13 | 13 | C.16 | 0.013786 |
ORF3a | 104 | P104L | cCt | cTt | 12 | 12 | AY.26 | 0.00034 |
ORF3a | 104 | P104L | cCt | cTt | 12 | 12 | B | 0.001534 |
ORF3a | 104 | P104L | cCt | cTt | 12 | 12 | B.1.36.36 | 0.007225 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 11 | 0.277778 | |
ORF3a | 104 | P104L | cCT | cTG | 2 | 11 | 0.111111 | |
ORF3a | 104 | P104L | CCT | TTA | 2 | 11 | 0.111111 | |
ORF3a | 104 | P104L | cCT | cTA | 2 | 11 | 0.111111 | |
ORF3a | 104 | P104L | cCt | cTt | 11 | 11 | B.1.1.214 | 0.00061 |
ORF3a | 104 | P104L | cCt | cTt | 10 | 10 | AY.54 | 0.000953 |
ORF3a | 104 | P104L | cCt | cTt | 9 | 9 | AY.6 | 0.00037 |
ORF3a | 104 | P104L | cCt | cTt | 9 | 9 | B.1.177.53 | 0.021531 |
ORF3a | 104 | P104L | cCt | cTt | 9 | 9 | B.1.234 | 0.001187 |
ORF3a | 104 | P104L | cCt | cTt | 8 | 8 | AU.1 | 0.010127 |
ORF3a | 104 | P104L | cCt | cTt | 8 | 8 | AY.5 | 0.000165 |
ORF3a | 104 | P104L | cCt | cTt | 7 | 7 | AY.117 | 0.000592 |
ORF3a | 104 | P104L | cCt | cTt | 7 | 7 | AY.39.1 | 0.000277 |
ORF3a | 104 | P104L | cCt | cTt | 7 | 7 | AY.46 | 0.000729 |
ORF3a | 104 | P104L | cCt | cTt | 7 | 7 | B.1.1.525 | 0.038251 |
ORF3a | 104 | P104L | cCt | cTt | 7 | 7 | B.1.636 | 0.04698 |
ORF3a | 104 | P104L | cCt | cTt | 6 | 6 | AY.75 | 0.000336 |
ORF3a | 104 | P104L | cCt | cTt | 6 | 6 | AZ.3 | 0.009119 |
ORF3a | 104 | P104L | cCt | cTt | 6 | 6 | B.1.1.507 | 0.052174 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | AY.111 | 0.000916 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | AY.23 | 0.000349 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | AY.46.4 | 0.000823 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | AY.47 | 0.000156 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | B.1.177.19 | 0.007153 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | B.1.240 | 0.001078 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | B.1.36.29 | 0.002587 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | B.1.596 | 0.000436 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | C.37 | 0.00058 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | Q.4 | 0.002274 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | Q.8 | 0.000825 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | AY.37 | 0.001264 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | AY.40 | 0.003857 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | AY.58 | 0.00363 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | AY.92 | 0.001149 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | B.1.1.157 | 0.003653 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | B.1.1.316 | 0.0037 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | B.1.177.17 | 0.003284 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | B.1.177.65 | 0.002661 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | B.1.177.73 | 0.002265 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | B.1.497 | 0.001259 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | B.1.618 | 0.016129 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | B.1.621 | 0.000354 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | P.1.15 | 0.000929 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | AD.2 | 0.000657 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | AY.118 | 0.000188 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | AY.42 | 0.000121 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | AY.46.1 | 0.00308 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | AY.74 | 0.000347 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | AY.9 | 0.000203 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | AY.9.2 | 0.00011 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | AY.91.1 | 0.012195 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | AY.99 | 0.003148 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | B.1.1.1 | 0.00098 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | B.1.1.317 | 0.001235 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | B.1.177.32 | 0.004049 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | B.1.243 | 0.000209 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | B.1.427 | 0.000151 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | P.1.16 | 0.001122 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | A.1 | 0.000564 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.114 | 0.000462 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.12 | 0.000632 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.3.1 | 0.000171 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.4.2 | 0.000043 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.4.4 | 0.000818 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.48 | 0.00093 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.55 | 0.001835 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.81 | 0.003984 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.88 | 0.001768 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.9.1 | 0.000167 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.99.2 | 0.000184 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.1.153 | 0.002191 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.1.265 | 0.006309 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.1.28 | 0.000622 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.1.284 | 0.000215 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.1.294 | 0.002532 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.1.434 | 0.000697 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.147 | 0.001512 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.177.44 | 0.001038 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.177.57 | 0.000562 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.177.79 | 0.004684 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.214.2 | 0.001199 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.241 | 0.001623 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.258 | 0.000133 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.258.17 | 0.000208 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.311 | 0.000549 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.36 | 0.000292 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.36.22 | 0.002415 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.397 | 0.009709 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.400 | 0.000858 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.413 | 0.008511 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.426 | 0.002018 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.595 | 0.000522 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 104 | P104L | cCT | cTC | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | P.1.17 | 0.000324 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | R.1 | 0.00018 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | A | 0.000387 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AM.4 | 0.003571 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.104 | 0.001984 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.7.1 | 0.000113 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.72 | 0.001361 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.73 | 0.000665 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.79 | 0.001211 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.93 | 0.000273 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.94 | 0.000443 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AZ.1 | 0.000867 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.189 | 0.001513 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.243 | 0.004082 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.266 | 0.012195 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.279 | 0.001121 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.280 | 0.003086 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.291 | 0.000742 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.328 | 0.016949 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.388 | 0.045455 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.446 | 0.076923 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.524 | 0.020833 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.528 | 0.004808 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.139 | 0.000733 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.160.14 | 0.002119 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.160.32 | 0.004292 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.177.50 | 0.004695 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.177.52 | 0.001757 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.177.83 | 0.001481 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.177.87 | 0.000728 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.218 | 0.005155 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.243.1 | 0.022222 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.258.15 | 0.018868 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.298 | 0.002114 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.318 | 0.038462 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.324 | 0.001605 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.336 | 0.002439 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.340 | 0.004292 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.350 | 0.002933 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.356 | 0.001727 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.375 | 0.00082 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.396 | 0.000706 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.399 | 0.001934 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.401 | 0.008197 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.474 | 0.001901 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.509 | 0.000866 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.530 | 0.007143 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.533 | 0.009615 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.560 | 0.00463 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.564 | 0.000426 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.565 | 0.00081 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.623 | 0.000536 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.627 | 0.00202 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.9.4 | 0.006135 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.9.5 | 0.005682 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.3 | 0.000831 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.40 | 0.000364 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.6 | 0.00091 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | C.14 | 0.004329 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | C.2 | 0.016129 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | C.36.3.1 | 0.002717 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | P.1.7 | 0.000319 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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