CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = N257N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a257N257NsynaaTaaC22802280126161-26163

Details of the mutation N257N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a257N257NaaTaaC22802280All0.000436
ORF3a257N257NaaTaaC12961296B.1.1.70.00116
ORF3a257N257NaaTaaC411411B.1.160.260.995157
ORF3a257N257NaaTaaC7575AY.40.000117
ORF3a257N257NaaTaaC4242AY.260.001189
ORF3a257N257NaaTaaC4040AY.430.000177
ORF3a257N257NaaTaaC3434AY.30.000338
ORF3a257N257NaaTaaC2525AY.1030.000155
ORF3a257N257NaaTaaC2525AY.440.000152
ORF3a257N257NaaTaaC2424B.1.20.000211
ORF3a257N257NaaTaaC2323AY.1200.000855
ORF3a257N257NaaTaaC2121B.1.617.20.000079
ORF3a257N257NaaTaaC1616AY.1060.005358
ORF3a257N257NaaTaaC1616B.1.1600.000499
ORF3a257N257NaaTaaC1414B.10.000128
ORF3a257N257NaaTaaC1414Q.80.002309
ORF3a257N257NaaTaaC1313AY.250.000078
ORF3a257N257NaaTaaC1313B.1.4060.078788
ORF3a257N257NaaTaaC1111AY.7.10.00124
ORF3a257N257NaaTaaC1111B.1.5260.000259
ORF3a257N257NaaTaaC99AY.46.50.001786
ORF3a257N257NaaTaaC99P.10.000142
ORF3a257N257NaaTaaC88B.1.3510.000238
ORF3a257N257NaaTaaC77B.1.1770.000092
ORF3a257N257NaaTaaC66AY.460.000624
ORF3a257N257NaaTaaC66B.1.2210.000426
ORF3a257N257NaaTaaC66B.1.438.10.000644
ORF3a257N257NaaTaaC55AY.190.005701
ORF3a257N257NaaTaaC55AY.4.20.000108
ORF3a257N257NaaTaaC55B.1.4290.000118
ORF3a257N257NaaTaaC44AY.390.000099
ORF3a257N257NaaTaaC44B.1.177.810.000757
ORF3a257N257NaaTaaC33AY.1000.000138
ORF3a257N257NaaTaaC33AY.330.0002
ORF3a257N257NaaTaaC33AY.4.2.10.000447
ORF3a257N257NaaTaaC33B.1.1.330.001263
ORF3a257N257NaaTaaC33B.1.2580.0002
ORF3a257N257NaaTaaC33P.20.00056
ORF3a257N257NaaTaaC22AY.1020.000053
ORF3a257N257NaaTaaC22AY.1210.000271
ORF3a257N257NaaTaaC22AY.200.000078
ORF3a257N257NaaTaaC22AY.230.000139
ORF3a257N257NaaTaaC22AY.290.000032
ORF3a257N257NaaTaaC22AY.98.10.000097
ORF3a257N257NaaTaaC22B.1.10.000036
ORF3a257N257NaaTaaC22B.1.1.2430.008163
ORF3a257N257NaaTaaC22B.1.1.4410.1
ORF3a257N257NaaTaaC22B.1.2340.000264
ORF3a257N257NaaTaaC22B.1.2430.000139
ORF3a257N257NaaTaaC22B.1.36.290.001035
ORF3a257N257NaaTaaC22B.1.466.20.000782
ORF3a257N257NaaTaaC22D.20.00015
ORF3a257N257NaaTaaC11AY.1050.000643
ORF3a257N257NaaTaaC11AY.1130.000142
ORF3a257N257NaaTaaC11AY.1160.000287
ORF3a257N257NaaTaaC11AY.1170.000085
ORF3a257N257NaaTaaC11AY.1190.000035
ORF3a257N257NaaTaaC11AY.270.000065
ORF3a257N257NaaTaaC11AY.320.000532
ORF3a257N257NaaTaaC11AY.420.00004
ORF3a257N257NaaTaaC11AY.46.60.000072
ORF3a257N257NaaTaaC11AY.75.10.00018
ORF3a257N257NaaTaaC11AY.9.20.000037
ORF3a257N257NaaTaaC11AY.99.20.000092
ORF3a257N257NaaTaaC11B.1.1.2040.00304
ORF3a257N257NaaTaaC11B.1.1.2140.000055
ORF3a257N257NaaTaaC11B.1.1.390.00051
ORF3a257N257NaaTaaC11B.1.1.4090.002833
ORF3a257N257NaaTaaC11B.1.1.5190.00004
ORF3a257N257NaaTaaC11B.1.160.80.001289
ORF3a257N257NaaTaaC11B.1.177.170.000821
ORF3a257N257NaaTaaC11B.1.177.210.000076
ORF3a257N257NaaTaaC11B.1.177.310.011494
ORF3a257N257NaaTaaC11B.1.258.220.002667
ORF3a257N257NaaTaaC11B.1.2600.003344
ORF3a257N257NaaTaaC11B.1.2790.000514
ORF3a257N257NaaTaaC11B.1.3110.000275
ORF3a257N257NaaTaaC11B.1.3370.005587
ORF3a257N257NaaTaaC11B.1.36.100.004785
ORF3a257N257NaaTaaC11B.1.4000.000429
ORF3a257N257NaaTaaC11B.1.5070.011236
ORF3a257N257NaaTaaC11B.1.5610.000397
ORF3a257N257NaaTaaC11B.1.5960.000087
ORF3a257N257NaaTaaC11C.370.000116
ORF3a257N257NaaTaaC11P.1.100.000269
ORF3a257N257NaaTaaC11P.1.140.000048
ORF3a257N257NaaTaaC11Q.70.001111
ORF3a257N257NaaTaaC11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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