CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = L96L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a96L96LsynctCctT271122140.81667325678-25680
ORF3a96L96LsynctCctG27112850.10512725678-25680
ORF3a96L96LsynctCctA27112100.077462225678-25680
ORF3a96L96LsynCtCTtA271110.00036886825678-25680
ORF3a96L96LsynCtCTtG271110.00036886825678-25680

Details of the mutation L96L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a96L96LctCctT22142711All0.000423
ORF3a96L96LctCctG2852711All0.000055
ORF3a96L96LctCctA2102711All0.00004
ORF3a96L96LCtCTtG12711All0
ORF3a96L96LCtCTtA12711All0
ORF3a96L96LctCctT586588B.1.617.20.002207
ORF3a96L96LctCctA2588B.1.617.20.000008
ORF3a96L96LctCctT201325B.1.1.70.00018
ORF3a96L96LctCctA121325B.1.1.70.000108
ORF3a96L96LctCctG3325B.1.1.70.000003
ORF3a96L96LctCctG262263AY.39.10.010379
ORF3a96L96LctCctT1263AY.39.10.00004
ORF3a96L96LctCctT222222B.1.5410.982301
ORF3a96L96LctCctT220220B.1.4270.011109
ORF3a96L96LctCctT113113AY.980.008926
ORF3a96L96LctCctT7783AY.40.00012
ORF3a96L96LctCctA583AY.40.000008
ORF3a96L96LctCctG183AY.40.000002
ORF3a96L96LctCctT8282B.1.4290.001929
ORF3a96L96LctCctT7070AY.30.000696
ORF3a96L96LctCctT6363B.1.4430.294393
ORF3a96L96LctCctT4747B.1.1.700.01603
ORF3a96L96LctCctT4242B.1.1600.00131
ORF3a96L96LctCctT2640B.10.000238
ORF3a96L96LctCctA740B.10.000064
ORF3a96L96LctCctG540B.10.000046
ORF3a96L96LCtCTtG140B.10.000009
ORF3a96L96LCtCTtA140B.10.000009
ORF3a96L96LctCctT3537AY.1030.000217
ORF3a96L96LctCctG137AY.1030.000006
ORF3a96L96LctCctA137AY.1030.000006
ORF3a96L96LctCctT2727AY.1190.000953
ORF3a96L96LctCctT2226AY.440.000134
ORF3a96L96LctCctA326AY.440.000018
ORF3a96L96LctCctG126AY.440.000006
ORF3a96L96LctCctT2525AY.4.50.002687
ORF3a96L96LctCctT2424B.1.6210.002124
ORF3a96L96LctCctT2123B.1.5260.000494
ORF3a96L96LctCctG223B.1.5260.000047
ORF3a96L96LctCctT1722B.1.20.00015
ORF3a96L96LctCctA322B.1.20.000026
ORF3a96L96LctCctG222B.1.20.000018
ORF3a96L96LctCctA2020B.60.018198
ORF3a96L96LctCctT1718AY.430.000075
ORF3a96L96LctCctA118AY.430.000004
ORF3a96L96LctCctT1717AY.9.10.001423
ORF3a96L96LctCctT1616AY.270.001036
ORF3a96L96LctCctT1313B.1.10.000236
ORF3a96L96LctCctT1212C.370.001393
ORF3a96L96LctCctT1011AY.390.000247
ORF3a96L96LctCctA111AY.390.000025
ORF3a96L96LctCctT99B.1.1.1800.096774
ORF3a96L96LctCctT99B.1.596.10.084112
ORF3a96L96LctCctA99C.30.10.060403
ORF3a96L96LctCctT88AY.1170.000676
ORF3a96L96LctCctT88AY.200.000311
ORF3a96L96LctCctT78AY.250.000042
ORF3a96L96LctCctG18AY.250.000006
ORF3a96L96LctCctT88B.1.5950.002088
ORF3a96L96LctCctT77AY.1020.000186
ORF3a96L96LctCctT77AY.1060.002344
ORF3a96L96LctCctT77AY.290.00011
ORF3a96L96LctCctT77B.1.5610.002779
ORF3a96L96LctCctT67P.1.140.000287
ORF3a96L96LctCctA17P.1.140.000048
ORF3a96L96LctCctT46AY.260.000113
ORF3a96L96LctCctA26AY.260.000057
ORF3a96L96LctCctT56B.1.5960.000436
ORF3a96L96LctCctA16B.1.5960.000087
ORF3a96L96LctCctA66B.6.60.005333
ORF3a96L96LctCctT66P.10.000095
ORF3a96L96LctCctT66P.1.70.001916
ORF3a96L96LctCctA55Q.80.000825
ORF3a96L96LctCctT44AY.1110.000733
ORF3a96L96LctCctA44AY.3.10.000341
ORF3a96L96LctCctT44AY.4.20.000087
ORF3a96L96LctCctT44AY.520.003257
ORF3a96L96LctCctA34B.1.466.20.001174
ORF3a96L96LctCctT14B.1.466.20.000391
ORF3a96L96LctCctT33AY.1000.000138
ORF3a96L96LctCctT33B.1.2580.0002
ORF3a96L96LctCctA23B.1.3510.000059
ORF3a96L96LctCctT13B.1.3510.00003
ORF3a96L96LctCctT33B.1.438.10.000322
ORF3a96L96LctCctT23B.1.6230.001073
ORF3a96L96LctCctA13B.1.6230.000536
ORF3a96L96LctCctT33D.20.000225
ORF3a96L96LctCctG220.111111
ORF3a96L96LctCctT12AY.230.00007
ORF3a96L96LctCctA12AY.230.00007
ORF3a96L96LctCctT22AY.350.000466
ORF3a96L96LctCctT22AY.50.000041
ORF3a96L96LctCctT22AY.9.20.000073
ORF3a96L96LctCctT22B.1.1.3060.000877
ORF3a96L96LctCctT22B.1.1.3710.020833
ORF3a96L96LctCctT22B.1.110.30.001437
ORF3a96L96LctCctT22B.1.1770.000026
ORF3a96L96LctCctT22B.1.177.70.00033
ORF3a96L96LctCctT22B.1.2430.000139
ORF3a96L96LctCctT22B.1.258.140.001961
ORF3a96L96LctCctT22B.1.3490.00143
ORF3a96L96LctCctG12B.1.360.000146
ORF3a96L96LctCctT12B.1.360.000146
ORF3a96L96LctCctA22B.1.4650.007605
ORF3a96L96LctCctA22B.1.5400.019417
ORF3a96L96LctCctT22B.1.6370.000146
ORF3a96L96LctCctT22C.160.002121
ORF3a96L96LctCctT22R.10.00018
ORF3a96L96LctCctA11A0.000387
ORF3a96L96LctCctA11AY.10.000396
ORF3a96L96LctCctT11AY.1150.005208
ORF3a96L96LctCctT11AY.1200.000037
ORF3a96L96LctCctT11AY.1210.000135
ORF3a96L96LctCctT11AY.140.000088
ORF3a96L96LctCctT11AY.160.00038
ORF3a96L96LctCctT11AY.16.10.00047
ORF3a96L96LctCctA11AY.330.000067
ORF3a96L96LctCctT11AY.410.000294
ORF3a96L96LctCctT11AY.460.000104
ORF3a96L96LctCctT11AY.46.10.001027
ORF3a96L96LctCctG11AY.46.60.000072
ORF3a96L96LctCctT11AY.470.000031
ORF3a96L96LctCctT11AY.570.000656
ORF3a96L96LctCctT11AY.60.000041
ORF3a96L96LctCctT11AY.610.000105
ORF3a96L96LctCctT11AY.740.000116
ORF3a96L96LctCctT11AY.75.10.00018
ORF3a96L96LctCctT11B0.000128
ORF3a96L96LctCctT11B.1.1.2160.00089
ORF3a96L96LctCctT11B.1.1.2180.007692
ORF3a96L96LctCctT11B.1.1.2210.010101
ORF3a96L96LctCctG11B.1.1.250.000569
ORF3a96L96LctCctT11B.1.1.2990.012195
ORF3a96L96LctCctG11B.1.1.3260.001761
ORF3a96L96LctCctT11B.1.1.3570.125
ORF3a96L96LctCctT11B.1.1.370.000193
ORF3a96L96LctCctA11B.1.1.440.00241
ORF3a96L96LctCctT11B.1.1.470.005348
ORF3a96L96LctCctT11B.1.1.510.001718
ORF3a96L96LctCctT11B.1.1.5190.00004
ORF3a96L96LctCctT11B.1.177.120.000152
ORF3a96L96LctCctT11B.1.177.210.000076
ORF3a96L96LctCctT11B.1.177.810.000189
ORF3a96L96LctCctA11B.1.1820.007246
ORF3a96L96LctCctT11B.1.2340.000132
ORF3a96L96LctCctT11B.1.3110.000275
ORF3a96L96LctCctT11B.1.3130.006579
ORF3a96L96LctCctT11B.1.36.190.009259
ORF3a96L96LctCctT11B.1.36.80.001
ORF3a96L96LctCctT11B.1.3670.000792
ORF3a96L96LctCctT11B.1.4360.001029
ORF3a96L96LctCctT11B.1.5030.002488
ORF3a96L96LctCctT11B.1.5090.000866
ORF3a96L96LctCctA11B.1.5240.001406
ORF3a96L96LctCctT11B.1.5640.000426
ORF3a96L96LctCctT11B.1.5750.000303
ORF3a96L96LctCctG11B.1.617.10.000129
ORF3a96L96LctCctA11B.6.80.008264
ORF3a96L96LctCctT11C.140.004329
ORF3a96L96LctCctT11P.1.120.000484
ORF3a96L96LctCctT11P.1.160.000374
ORF3a96L96LctCctT11P.1.170.000162
ORF3a96L96LctCctT11P.30.001595
ORF3a96L96LctCctT11P.60.003145
ORF3a96L96LctCctT11P.70.004367

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.