CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = L85F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a85L85FnonsynttGttT16357158900.9714525645-25647
ORF3a85L85FnonsynttGttC163574670.028550525645-25647

Details of the mutation L85F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a85L85FttGttT1589016357All0.003039
ORF3a85L85FttGttC46716357All0.000089
ORF3a85L85FttGttT31413151B.1.1.70.002812
ORF3a85L85FttGttC103151B.1.1.70.000009
ORF3a85L85FttGttT24642477B.1.617.20.009278
ORF3a85L85FttGttC132477B.1.617.20.000049
ORF3a85L85FttGttT16181618AY.20.576211
ORF3a85L85FttGttT16011601B.1.177.210.122429
ORF3a85L85FttGttT11481153AY.40.001787
ORF3a85L85FttGttC51153AY.40.000008
ORF3a85L85FttGttT11321135AY.1020.030014
ORF3a85L85FttGttC31135AY.1020.00008
ORF3a85L85FttGttT472473AY.250.002839
ORF3a85L85FttGttC1473AY.250.000006
ORF3a85L85FttGttT363363AY.430.001608
ORF3a85L85FttGttC313313Z.10.904624
ORF3a85L85FttGttT243247AY.440.001479
ORF3a85L85FttGttC4247AY.440.000024
ORF3a85L85FttGttT242245B.10.002217
ORF3a85L85FttGttC3245B.10.000027
ORF3a85L85FttGttT199199B.1.1770.00262
ORF3a85L85FttGttT197197AY.390.004868
ORF3a85L85FttGttT169169B.1.1.2260.982558
ORF3a85L85FttGttT137137AY.4.10.101032
ORF3a85L85FttGttT117117B.1.2430.008141
ORF3a85L85FttGttT116116AY.30.001154
ORF3a85L85FttGttT116116AY.60.004771
ORF3a85L85FttGttT109110AY.450.013264
ORF3a85L85FttGttC1110AY.450.000122
ORF3a85L85FttGttT103103AY.1030.00064
ORF3a85L85FttGttT9292AY.5.30.031039
ORF3a85L85FttGttT8989B.1.2340.011743
ORF3a85L85FttGttC6976B.1.6210.006108
ORF3a85L85FttGttT776B.1.6210.00062
ORF3a85L85FttGttT7475P.10.001166
ORF3a85L85FttGttC175P.10.000016
ORF3a85L85FttGttT7071AY.260.001982
ORF3a85L85FttGttC171AY.260.000028
ORF3a85L85FttGttT4969B.1.1600.001528
ORF3a85L85FttGttC2069B.1.1600.000624
ORF3a85L85FttGttT6666AY.1110.012088
ORF3a85L85FttGttT6161AY.1190.002154
ORF3a85L85FttGttT5858B.1.20.000511
ORF3a85L85FttGttT5757B.1.258.140.055882
ORF3a85L85FttGttT4343B.1.5170.01836
ORF3a85L85FttGttT4040B.1.177.600.008737
ORF3a85L85FttGttT3838AY.460.003955
ORF3a85L85FttGttT3737B.1.10.000671
ORF3a85L85FttGttT3636AY.290.000568
ORF3a85L85FttGttT3636AY.330.002404
ORF3a85L85FttGttT3636AY.90.002433
ORF3a85L85FttGttT3434B.1.3510.001011
ORF3a85L85FttGttT3233AY.4.20.000694
ORF3a85L85FttGttC133AY.4.20.000022
ORF3a85L85FttGttT3232B.1.5960.002788
ORF3a85L85FttGttT3131AY.1210.004195
ORF3a85L85FttGttT3030B.1.6230.016094
ORF3a85L85FttGttT2929AY.1170.002451
ORF3a85L85FttGttT2526AY.1000.00115
ORF3a85L85FttGttC126AY.1000.000046
ORF3a85L85FttGttT2626B.1.3110.007139
ORF3a85L85FttGttT2525AY.1200.000929
ORF3a85L85FttGttT2525AY.370.007901
ORF3a85L85FttGttT2324AY.230.001604
ORF3a85L85FttGttC124AY.230.00007
ORF3a85L85FttGttT2323B.1.4290.000541
ORF3a85L85FttGttT2222AY.1050.014148
ORF3a85L85FttGttT2121AY.46.60.001516
ORF3a85L85FttGttT2021AY.50.000413
ORF3a85L85FttGttC121AY.50.000021
ORF3a85L85FttGttT2121AY.550.019266
ORF3a85L85FttGttT1818AY.200.0007
ORF3a85L85FttGttT1818B.1.5260.000423
ORF3a85L85FttGttT1818P.1.160.006734
ORF3a85L85FttGttT1717AY.100.009009
ORF3a85L85FttGttT1717AY.75.10.003065
ORF3a85L85FttGttT1717B.1.1.5190.000675
ORF3a85L85FttGttT1116AY.470.000342
ORF3a85L85FttGttC516AY.470.000156
ORF3a85L85FttGttT1616C.370.001857
ORF3a85L85FttGttT1515AY.1160.004302
ORF3a85L85FttGttT1515AY.620.006536
ORF3a85L85FttGttT1515AY.750.00084
ORF3a85L85FttGttT1515AY.98.10.000726
ORF3a85L85FttGttT1414AY.1140.003235
ORF3a85L85FttGttT1414AY.1180.000877
ORF3a85L85FttGttT1414AY.710.006651
ORF3a85L85FttGttT1414AY.890.068627
ORF3a85L85FttGttT1313AY.39.10.000515
ORF3a85L85FttGttT1313AY.980.001027
ORF3a85L85FttGttT1212AY.29.10.002646
ORF3a85L85FttGttT1212AY.740.001388
ORF3a85L85FttGttT1111AY.1060.003684
ORF3a85L85FttGttT1111B.1.4990.011555
ORF3a85L85FttGttT1011B.1.5250.001132
ORF3a85L85FttGttC111B.1.5250.000113
ORF3a85L85FttGttT1111P.1.170.001779
ORF3a85L85FttGttT1010AY.540.000953
ORF3a85L85FttGttT1010AY.9.20.000367
ORF3a85L85FttGttT910B.1.2580.000599
ORF3a85L85FttGttC110B.1.2580.000067
ORF3a85L85FttGttT1010B.1.4280.010204
ORF3a85L85FttGttT99AY.650.004797
ORF3a85L85FttGttT99AY.950.006849
ORF3a85L85FttGttT99B.1.6370.000658
ORF3a85L85FttGttT88AY.34.10.00408
ORF3a85L85FttGttT88AY.420.000322
ORF3a85L85FttGttT88AY.580.00726
ORF3a85L85FttGttT88AY.840.0035
ORF3a85L85FttGttT88AY.850.003417
ORF3a85L85FttGttT77AY.190.007982
ORF3a85L85FttGttT77AY.690.001307
ORF3a85L85FttGttT77AY.7.10.000789
ORF3a85L85FttGttT77B.1.1.280.002179
ORF3a85L85FttGttT77B.1.2210.000497
ORF3a85L85FttGttT77C.160.007423
ORF3a85L85FttGttT77P.20.001306
ORF3a85L85FttGttT66AY.10.002374
ORF3a85L85FttGttT66AY.360.000889
ORF3a85L85FttGttT66AY.46.20.003812
ORF3a85L85FttGttT66AY.5.40.00166
ORF3a85L85FttGttT66AY.99.20.000553
ORF3a85L85FttGttT66B.1.177.40.001266
ORF3a85L85FttGttT66B.1.4080.02214
ORF3a85L85FttGttT66B.1.6200.005676
ORF3a85L85FttGttT66P.1.140.000287
ORF3a85L85FttGttT66Q.70.006667
ORF3a85L85FttGttT55AY.1130.000712
ORF3a85L85FttGttT55AY.16.10.00235
ORF3a85L85FttGttT55AY.170.040984
ORF3a85L85FttGttT55AY.46.10.005133
ORF3a85L85FttGttT55AY.590.002648
ORF3a85L85FttGttT55AY.610.000524
ORF3a85L85FttGttT55AY.860.004149
ORF3a85L85FttGttT55AY.9.10.000419
ORF3a85L85FttGttT55B.1.1.2220.00102
ORF3a85L85FttGttT55B.1.160.160.004647
ORF3a85L85FttGttT55B.1.5600.023148
ORF3a85L85FttGttT44AY.160.001519
ORF3a85L85FttGttT34AY.270.000194
ORF3a85L85FttGttC14AY.270.000065
ORF3a85L85FttGttT44AY.280.007561
ORF3a85L85FttGttT44AY.320.00213
ORF3a85L85FttGttT44AY.670.001857
ORF3a85L85FttGttT44AY.70.000784
ORF3a85L85FttGttT44AZ.20.003284
ORF3a85L85FttGttT34B0.000383
ORF3a85L85FttGttC14B0.000128
ORF3a85L85FttGttT44B.1.1.1530.004381
ORF3a85L85FttGttT44B.1.1.500.002716
ORF3a85L85FttGttT44B.1.2400.000862
ORF3a85L85FttGttT44B.1.36.290.002069
ORF3a85L85FttGttT44B.1.3690.001141
ORF3a85L85FttGttT44Q.20.002454
ORF3a85L85FttGttT44R.10.00036
ORF3a85L85FttGttT33A.250.054545
ORF3a85L85FttGttT33AY.1100.000338
ORF3a85L85FttGttT33AY.120.000948
ORF3a85L85FttGttT33AY.4.30.002525
ORF3a85L85FttGttT33AY.400.002893
ORF3a85L85FttGttT33AY.410.000882
ORF3a85L85FttGttT33AY.720.004082
ORF3a85L85FttGttT33AY.930.000819
ORF3a85L85FttGttT33AY.940.001328
ORF3a85L85FttGttT33AZ.2.10.02439
ORF3a85L85FttGttT33B.1.1.2160.002671
ORF3a85L85FttGttT33B.1.1.2770.002276
ORF3a85L85FttGttT33B.1.1.3060.001315
ORF3a85L85FttGttT33B.1.1.3720.002066
ORF3a85L85FttGttT33B.1.1.5060.111111
ORF3a85L85FttGttC33B.1.177.500.014085
ORF3a85L85FttGttC23B.1.177.650.001331
ORF3a85L85FttGttT13B.1.177.650.000665
ORF3a85L85FttGttT33B.1.177.830.004444
ORF3a85L85FttGttT33B.1.3260.022727
ORF3a85L85FttGttT33B.1.360.000438
ORF3a85L85FttGttT33B.1.4520.041096
ORF3a85L85FttGttT33P.1.100.000808
ORF3a85L85FttGttT33P.1.150.000697
ORF3a85L85FttGttT33Q.80.000495
ORF3a85L85FttGttT22A.230.021053
ORF3a85L85FttGttT22AY.1070.000932
ORF3a85L85FttGttT22AY.120.10.000642
ORF3a85L85FttGttT22AY.140.000176
ORF3a85L85FttGttT22AY.340.000194
ORF3a85L85FttGttT22AY.350.000466
ORF3a85L85FttGttT22AY.4.50.000215
ORF3a85L85FttGttT22AY.46.40.000329
ORF3a85L85FttGttT22AY.490.00639
ORF3a85L85FttGttT22AY.560.00321
ORF3a85L85FttGttT22AY.640.00119
ORF3a85L85FttGttT22AY.680.000547
ORF3a85L85FttGttT22AY.700.000417
ORF3a85L85FttGttT22AY.730.001331
ORF3a85L85FttGttT22AY.770.002255
ORF3a85L85FttGttT22AY.820.002714
ORF3a85L85FttGttT22AY.920.000575
ORF3a85L85FttGttT22AY.960.004149
ORF3a85L85FttGttT22B.1.1.10.000653
ORF3a85L85FttGttT22B.1.1.1740.006757
ORF3a85L85FttGttT22B.1.1.2840.000215
ORF3a85L85FttGttT22B.1.1.3250.051282
ORF3a85L85FttGttT22B.1.1.3350.025974
ORF3a85L85FttGttT22B.1.1.700.000682
ORF3a85L85FttGttT22B.1.140.035088
ORF3a85L85FttGttT22B.1.1570.00597
ORF3a85L85FttGttT22B.1.177.120.000303
ORF3a85L85FttGttT22B.1.177.560.001335
ORF3a85L85FttGttT22B.1.2360.004107
ORF3a85L85FttGttT22B.1.36.10.002281
ORF3a85L85FttGttT22B.1.4270.000101
ORF3a85L85FttGttT22B.1.466.20.000782
ORF3a85L85FttGttT22B.1.5380.016129
ORF3a85L85FttGttT22B.1.5760.001813
ORF3a85L85FttGttT22B.1.5950.000522
ORF3a85L85FttGttT22B.1.621.10.001012
ORF3a85L85FttGttT22B.1.6390.043478
ORF3a85L85FttGttT22B.60.00182
ORF3a85L85FttGttT12C.360.000911
ORF3a85L85FttGttC12C.360.000911
ORF3a85L85FttGttT22C.380.016129
ORF3a85L85FttGttT22P.1.70.000639
ORF3a85L85FttGttT22P.70.008734
ORF3a85L85FttGttC12Q.10.000126
ORF3a85L85FttGttT12Q.10.000126
ORF3a85L85FttGttC110.055556
ORF3a85L85FttGttT11A.20.000662
ORF3a85L85FttGttT11A.2.5.20.001572
ORF3a85L85FttGttT11A.270.001656
ORF3a85L85FttGttT11AS.20.015625
ORF3a85L85FttGttT11AU.20.002421
ORF3a85L85FttGttT11AY.1010.00049
ORF3a85L85FttGttT11AY.1090.00074
ORF3a85L85FttGttT11AY.210.001898
ORF3a85L85FttGttT11AY.300.000396
ORF3a85L85FttGttT11AY.480.000465
ORF3a85L85FttGttT11AY.510.000909
ORF3a85L85FttGttT11AY.520.000814
ORF3a85L85FttGttT11AY.530.000288
ORF3a85L85FttGttT11AY.880.000884
ORF3a85L85FttGttT11AY.910.00073
ORF3a85L85FttGttT11AY.990.001049
ORF3a85L85FttGttT11AY.99.10.001553
ORF3a85L85FttGttT11AZ.30.00152
ORF3a85L85FttGttT11B.1.1.1380.006061
ORF3a85L85FttGttT11B.1.1.1640.005155
ORF3a85L85FttGttT11B.1.1.1980.001468
ORF3a85L85FttGttT11B.1.1.2140.000055
ORF3a85L85FttGttT11B.1.1.2410.00207
ORF3a85L85FttGttT11B.1.1.2910.000742
ORF3a85L85FttGttT11B.1.1.2940.001266
ORF3a85L85FttGttT11B.1.1.3170.000412
ORF3a85L85FttGttT11B.1.1.3180.000302
ORF3a85L85FttGttT11B.1.1.330.000421
ORF3a85L85FttGttT11B.1.1.340.013158
ORF3a85L85FttGttT11B.1.1.3480.000796
ORF3a85L85FttGttT11B.1.1.3590.027778
ORF3a85L85FttGttT11B.1.1.3970.002252
ORF3a85L85FttGttT11B.1.1.4090.002833
ORF3a85L85FttGttT11B.1.1.4200.001006
ORF3a85L85FttGttC11B.1.1.4310.016129
ORF3a85L85FttGttT11B.1.1.4660.008696
ORF3a85L85FttGttT11B.1.1.5180.006329
ORF3a85L85FttGttT11B.1.1.820.038462
ORF3a85L85FttGttT11B.1.177.50.001242
ORF3a85L85FttGttT11B.1.177.70.000165
ORF3a85L85FttGttC11B.1.177.810.000189
ORF3a85L85FttGttT11B.1.2100.002132
ORF3a85L85FttGttT11B.1.2140.003663
ORF3a85L85FttGttT11B.1.221.20.004016
ORF3a85L85FttGttT11B.1.2810.021739
ORF3a85L85FttGttT11B.1.36.360.000602
ORF3a85L85FttGttT11B.1.36.380.001642
ORF3a85L85FttGttT11B.1.3620.001541
ORF3a85L85FttGttT11B.1.3710.001122
ORF3a85L85FttGttT11B.1.4000.000429
ORF3a85L85FttGttT11B.1.4170.028571
ORF3a85L85FttGttT11B.1.438.10.000107
ORF3a85L85FttGttT11B.1.4560.003268
ORF3a85L85FttGttT11B.1.5090.000866
ORF3a85L85FttGttT11B.1.5300.007143
ORF3a85L85FttGttT11B.1.5610.000397
ORF3a85L85FttGttT11B.1.5740.002151
ORF3a85L85FttGttT11B.1.575.10.002439
ORF3a85L85FttGttT11B.1.5770.000687
ORF3a85L85FttGttT11B.1.5800.004065
ORF3a85L85FttGttT11B.1.5990.00365
ORF3a85L85FttGttT11B.1.6060.006024
ORF3a85L85FttGttT11B.1.617.10.000129
ORF3a85L85FttGttT11B.1.6250.002353
ORF3a85L85FttGttT11B.1.6280.000352
ORF3a85L85FttGttT11B.1.88.10.004808
ORF3a85L85FttGttT11B.450.003831
ORF3a85L85FttGttT11C.230.005814
ORF3a85L85FttGttT11C.350.000774
ORF3a85L85FttGttT11C.36.30.000567
ORF3a85L85FttGttT11N.50.001767
ORF3a85L85FttGttT11P.1.10.000318
ORF3a85L85FttGttT11P.1.10.10.00813
ORF3a85L85FttGttT11P.1.17.10.000875
ORF3a85L85FttGttT11P.1.40.000977
ORF3a85L85FttGttT11P.60.003145
ORF3a85L85FttGttT11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.