CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = L41L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a41L41LsynctCctT255324640.96513925513-25515
ORF3a41L41LsynctCctA2553860.033685925513-25515
ORF3a41L41LsynctCctG255330.0011750925513-25515

Details of the mutation L41L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a41L41LctCctT24642553All0.000471
ORF3a41L41LctCctA862553All0.000016
ORF3a41L41LctCctG32553All0.000001
ORF3a41L41LctCctT656656B.1.1.70.000587
ORF3a41L41LctCctT440440AY.60.018097
ORF3a41L41LctCctT335335AY.430.001484
ORF3a41L41LctCctT128128P.10.002017
ORF3a41L41LctCctT126127B.1.617.20.000474
ORF3a41L41LctCctA1127B.1.617.20.000004
ORF3a41L41LctCctT9798B.1.20.000854
ORF3a41L41LctCctG198B.1.20.000009
ORF3a41L41LctCctT7070AY.120.10.022472
ORF3a41L41LctCctT6467AY.40.0001
ORF3a41L41LctCctA367AY.40.000005
ORF3a41L41LctCctT5064AY.440.000304
ORF3a41L41LctCctA1464AY.440.000085
ORF3a41L41LctCctT5555B.1.4290.001294
ORF3a41L41LctCctT3737B.1.1.2220.007548
ORF3a41L41LctCctT3737B.1.1770.000487
ORF3a41L41LctCctA3232B.1.177.120.004854
ORF3a41L41LctCctT2929Q.10.003663
ORF3a41L41LctCctT2525B.1.10.000454
ORF3a41L41LctCctT1319B.10.000119
ORF3a41L41LctCctA619B.10.000055
ORF3a41L41LctCctT915AY.1030.000056
ORF3a41L41LctCctA615AY.1030.000037
ORF3a41L41LctCctA1515B.1.36.290.00776
ORF3a41L41LctCctT1112AY.1020.000292
ORF3a41L41LctCctA112AY.1020.000027
ORF3a41L41LctCctT1212AY.340.001164
ORF3a41L41LctCctT1010AY.880.008842
ORF3a41L41LctCctT1010B.1.3510.000297
ORF3a41L41LctCctT99AY.270.000582
ORF3a41L41LctCctT89AY.50.000165
ORF3a41L41LctCctA19AY.50.000021
ORF3a41L41LctCctT99B.1.1.2940.011392
ORF3a41L41LctCctT88AY.1110.001465
ORF3a41L41LctCctT88B.1.177.440.004152
ORF3a41L41LctCctT88B.1.5960.000697
ORF3a41L41LctCctT77A.2.50.003493
ORF3a41L41LctCctT77AY.1100.000789
ORF3a41L41LctCctT77AY.250.000042
ORF3a41L41LctCctT77AY.450.000852
ORF3a41L41LctCctT77AY.5.40.001937
ORF3a41L41LctCctT77B.1.1600.000218
ORF3a41L41LctCctT66AY.1180.000376
ORF3a41L41LctCctT66AY.920.001724
ORF3a41L41LctCctT66B.1.1.5190.000238
ORF3a41L41LctCctT66B.1.5260.000141
ORF3a41L41LctCctT66B.1.6210.000531
ORF3a41L41LctCctT55AY.290.000079
ORF3a41L41LctCctT44AY.260.000113
ORF3a41L41LctCctT44AY.4.20.000087
ORF3a41L41LctCctT44AY.46.60.000289
ORF3a41L41LctCctT44B.1.2430.000278
ORF3a41L41LctCctT24B.1.360.000292
ORF3a41L41LctCctA24B.1.360.000292
ORF3a41L41LctCctT44P.1.140.000191
ORF3a41L41LctCctT44P.1.170.000647
ORF3a41L41LctCctT33AY.1200.000112
ORF3a41L41LctCctT33AY.140.000264
ORF3a41L41LctCctT23AY.230.000139
ORF3a41L41LctCctA13AY.230.00007
ORF3a41L41LctCctT33AY.30.00003
ORF3a41L41LctCctT33AY.330.0002
ORF3a41L41LctCctT33AY.390.000074
ORF3a41L41LctCctT33AY.690.00056
ORF3a41L41LctCctT33B.1.617.10.000387
ORF3a41L41LctCctT22AD.20.000438
ORF3a41L41LctCctT22AY.1080.002205
ORF3a41L41LctCctT22AY.1190.000071
ORF3a41L41LctCctT22AY.420.00008
ORF3a41L41LctCctT22AY.460.000208
ORF3a41L41LctCctT22AY.470.000062
ORF3a41L41LctCctT22AY.5.30.000675
ORF3a41L41LctCctT22AY.820.002714
ORF3a41L41LctCctT22AY.980.000158
ORF3a41L41LctCctT22B.1.1.10.000653
ORF3a41L41LctCctT22B.1.2210.000142
ORF3a41L41LctCctT22B.1.5650.001621
ORF3a41L41LctCctT22B.1.5670.006667
ORF3a41L41LctCctT22D.20.00015
ORF3a41L41LctCctT22P.1.120.000968
ORF3a41L41LctCctT22P.1.150.000465
ORF3a41L41LctCctA11A0.000387
ORF3a41L41LctCctT11AY.10.000396
ORF3a41L41LctCctT11AY.1130.000142
ORF3a41L41LctCctT11AY.1170.000085
ORF3a41L41LctCctT11AY.120.000316
ORF3a41L41LctCctT11AY.200.000039
ORF3a41L41LctCctT11AY.320.000532
ORF3a41L41LctCctT11AY.34.10.00051
ORF3a41L41LctCctT11AY.360.000148
ORF3a41L41LctCctT11AY.370.000316
ORF3a41L41LctCctT11AY.4.50.000107
ORF3a41L41LctCctA11AY.490.003195
ORF3a41L41LctCctA11AY.520.000814
ORF3a41L41LctCctT11AY.550.000917
ORF3a41L41LctCctT11AY.590.00053
ORF3a41L41LctCctT11AY.770.001127
ORF3a41L41LctCctG11AY.840.000437
ORF3a41L41LctCctT11AY.90.000068
ORF3a41L41LctCctT11AY.930.000273
ORF3a41L41LctCctT11B0.000128
ORF3a41L41LctCctT11B.1.1.2530.002506
ORF3a41L41LctCctT11B.1.1.3100.015152
ORF3a41L41LctCctT11B.1.1.330.000421
ORF3a41L41LctCctT11B.1.1.340.013158
ORF3a41L41LctCctT11B.1.1.3430.020833
ORF3a41L41LctCctT11B.1.1.370.000193
ORF3a41L41LctCctT11B.1.177.100.000878
ORF3a41L41LctCctT11B.1.177.560.000668
ORF3a41L41LctCctT11B.1.2340.000132
ORF3a41L41LctCctT11B.1.2390.001221
ORF3a41L41LctCctT11B.1.258.170.000104
ORF3a41L41LctCctT11B.1.3500.002933
ORF3a41L41LctCctT11B.1.36.360.000602
ORF3a41L41LctCctT11B.1.3610.001289
ORF3a41L41LctCctT11B.1.3960.000706
ORF3a41L41LctCctT11B.1.4270.00005
ORF3a41L41LctCctT11B.1.4360.001029
ORF3a41L41LctCctT11B.1.4990.00105
ORF3a41L41LctCctT11B.1.5930.01087
ORF3a41L41LctCctT11B.1.595.30.026316
ORF3a41L41LctCctG11B.1.6300.005236
ORF3a41L41LctCctA11B.230.002924
ORF3a41L41LctCctT11B.6.60.000889
ORF3a41L41LctCctT11C.140.004329
ORF3a41L41LctCctT11C.360.000911
ORF3a41L41LctCctT11P.1.70.000319
ORF3a41L41LctCctT11P.20.000187
ORF3a41L41LctCctT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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