CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 41 | L41F | nonsyn | Ctc | Ttc | 11199 | 11196 | 0.999732 | 25513-25515 | |
ORF3a | 41 | L41F | nonsyn | CtC | TtT | 11199 | 3 | 0.000267881 | 25513-25515 |
Details of the mutation L41F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 41 | L41F | Ctc | Ttc | 11196 | 11199 | All | 0.002141 |
ORF3a | 41 | L41F | CtC | TtT | 3 | 11199 | All | 0.000001 |
ORF3a | 41 | L41F | Ctc | Ttc | 2185 | 2187 | AY.98.1 | 0.105821 |
ORF3a | 41 | L41F | CtC | TtT | 2 | 2187 | AY.98.1 | 0.000097 |
ORF3a | 41 | L41F | Ctc | Ttc | 1875 | 1875 | AY.4 | 0.002918 |
ORF3a | 41 | L41F | Ctc | Ttc | 1430 | 1430 | B.1.1.7 | 0.00128 |
ORF3a | 41 | L41F | Ctc | Ttc | 573 | 574 | B.1.617.2 | 0.002158 |
ORF3a | 41 | L41F | CtC | TtT | 1 | 574 | B.1.617.2 | 0.000004 |
ORF3a | 41 | L41F | Ctc | Ttc | 543 | 543 | AY.43 | 0.002406 |
ORF3a | 41 | L41F | Ctc | Ttc | 511 | 511 | B.1.628 | 0.180056 |
ORF3a | 41 | L41F | Ctc | Ttc | 395 | 395 | B.1.2 | 0.003478 |
ORF3a | 41 | L41F | Ctc | Ttc | 340 | 340 | B.1.177 | 0.004477 |
ORF3a | 41 | L41F | Ctc | Ttc | 267 | 267 | AY.102 | 0.007079 |
ORF3a | 41 | L41F | Ctc | Ttc | 235 | 235 | AY.44 | 0.00143 |
ORF3a | 41 | L41F | Ctc | Ttc | 202 | 202 | P.1 | 0.003182 |
ORF3a | 41 | L41F | Ctc | Ttc | 174 | 174 | AY.39 | 0.0043 |
ORF3a | 41 | L41F | Ctc | Ttc | 147 | 147 | AY.120 | 0.005465 |
ORF3a | 41 | L41F | Ctc | Ttc | 129 | 129 | B.1 | 0.001182 |
ORF3a | 41 | L41F | Ctc | Ttc | 126 | 126 | B.1.1 | 0.002286 |
ORF3a | 41 | L41F | Ctc | Ttc | 100 | 100 | B.1.177.27 | 0.943396 |
ORF3a | 41 | L41F | Ctc | Ttc | 93 | 93 | B.1.1.141 | 0.187123 |
ORF3a | 41 | L41F | Ctc | Ttc | 91 | 91 | AY.25 | 0.000547 |
ORF3a | 41 | L41F | Ctc | Ttc | 88 | 88 | AY.103 | 0.000546 |
ORF3a | 41 | L41F | Ctc | Ttc | 86 | 86 | AY.3 | 0.000855 |
ORF3a | 41 | L41F | Ctc | Ttc | 85 | 85 | B.1.258.17 | 0.008838 |
ORF3a | 41 | L41F | Ctc | Ttc | 69 | 69 | AY.29 | 0.001088 |
ORF3a | 41 | L41F | Ctc | Ttc | 65 | 65 | B.1.1.284 | 0.006981 |
ORF3a | 41 | L41F | Ctc | Ttc | 63 | 63 | AY.75 | 0.003529 |
ORF3a | 41 | L41F | Ctc | Ttc | 63 | 63 | B.1.177.44 | 0.032693 |
ORF3a | 41 | L41F | Ctc | Ttc | 57 | 57 | B.1.563 | 0.966102 |
ORF3a | 41 | L41F | Ctc | Ttc | 53 | 53 | A.2.5 | 0.026447 |
ORF3a | 41 | L41F | Ctc | Ttc | 42 | 42 | B.1.1.222 | 0.008568 |
ORF3a | 41 | L41F | Ctc | Ttc | 40 | 40 | AY.119 | 0.001412 |
ORF3a | 41 | L41F | Ctc | Ttc | 34 | 34 | AY.92 | 0.009767 |
ORF3a | 41 | L41F | Ctc | Ttc | 34 | 34 | B.1.526 | 0.000799 |
ORF3a | 41 | L41F | Ctc | Ttc | 30 | 30 | AY.5 | 0.000619 |
ORF3a | 41 | L41F | Ctc | Ttc | 29 | 29 | AY.26 | 0.000821 |
ORF3a | 41 | L41F | Ctc | Ttc | 28 | 28 | AY.42 | 0.001126 |
ORF3a | 41 | L41F | Ctc | Ttc | 27 | 27 | B.1.621 | 0.00239 |
ORF3a | 41 | L41F | Ctc | Ttc | 22 | 22 | AY.68 | 0.006022 |
ORF3a | 41 | L41F | Ctc | Ttc | 20 | 20 | B.1.177.81 | 0.003786 |
ORF3a | 41 | L41F | Ctc | Ttc | 20 | 20 | B.1.351 | 0.000595 |
ORF3a | 41 | L41F | Ctc | Ttc | 20 | 20 | P.1.17 | 0.003235 |
ORF3a | 41 | L41F | Ctc | Ttc | 19 | 19 | AY.4.2 | 0.000412 |
ORF3a | 41 | L41F | Ctc | Ttc | 19 | 19 | B.1.234 | 0.002507 |
ORF3a | 41 | L41F | Ctc | Ttc | 19 | 19 | B.1.565 | 0.015397 |
ORF3a | 41 | L41F | Ctc | Ttc | 17 | 17 | B.1.525 | 0.001924 |
ORF3a | 41 | L41F | Ctc | Ttc | 16 | 16 | AY.47 | 0.000498 |
ORF3a | 41 | L41F | Ctc | Ttc | 15 | 15 | AY.20 | 0.000583 |
ORF3a | 41 | L41F | Ctc | Ttc | 14 | 14 | AY.98 | 0.001106 |
ORF3a | 41 | L41F | Ctc | Ttc | 14 | 14 | B.1.177.21 | 0.001071 |
ORF3a | 41 | L41F | Ctc | Ttc | 13 | 13 | AY.39.1 | 0.000515 |
ORF3a | 41 | L41F | Ctc | Ttc | 13 | 13 | B.1.258 | 0.000865 |
ORF3a | 41 | L41F | Ctc | Ttc | 13 | 13 | B.1.258.11 | 0.005153 |
ORF3a | 41 | L41F | Ctc | Ttc | 13 | 13 | B.1.36 | 0.001897 |
ORF3a | 41 | L41F | Ctc | Ttc | 12 | 12 | AY.107 | 0.005592 |
ORF3a | 41 | L41F | Ctc | Ttc | 12 | 12 | AY.54 | 0.001144 |
ORF3a | 41 | L41F | Ctc | Ttc | 12 | 12 | AY.95 | 0.009132 |
ORF3a | 41 | L41F | Ctc | Ttc | 12 | 12 | B.1.596 | 0.001046 |
ORF3a | 41 | L41F | Ctc | Ttc | 11 | 11 | AY.45 | 0.001339 |
ORF3a | 41 | L41F | Ctc | Ttc | 11 | 11 | B.1.1.207 | 0.013002 |
ORF3a | 41 | L41F | Ctc | Ttc | 11 | 11 | B.1.243 | 0.000765 |
ORF3a | 41 | L41F | Ctc | Ttc | 11 | 11 | B.1.311 | 0.00302 |
ORF3a | 41 | L41F | Ctc | Ttc | 11 | 11 | B.1.582 | 0.005397 |
ORF3a | 41 | L41F | Ctc | Ttc | 11 | 11 | Q.2 | 0.006748 |
ORF3a | 41 | L41F | Ctc | Ttc | 10 | 10 | B.1.1.519 | 0.000397 |
ORF3a | 41 | L41F | Ctc | Ttc | 10 | 10 | B.1.160 | 0.000312 |
ORF3a | 41 | L41F | Ctc | Ttc | 9 | 9 | AY.46.2 | 0.005718 |
ORF3a | 41 | L41F | Ctc | Ttc | 9 | 9 | C.37 | 0.001045 |
ORF3a | 41 | L41F | Ctc | Ttc | 8 | 8 | AY.61 | 0.000838 |
ORF3a | 41 | L41F | Ctc | Ttc | 8 | 8 | B.1.1.214 | 0.000444 |
ORF3a | 41 | L41F | Ctc | Ttc | 8 | 8 | B.1.429 | 0.000188 |
ORF3a | 41 | L41F | Ctc | Ttc | 7 | 7 | AY.113 | 0.000997 |
ORF3a | 41 | L41F | Ctc | Ttc | 7 | 7 | AY.33 | 0.000467 |
ORF3a | 41 | L41F | Ctc | Ttc | 7 | 7 | AY.5.3 | 0.002362 |
ORF3a | 41 | L41F | Ctc | Ttc | 7 | 7 | AY.7 | 0.001372 |
ORF3a | 41 | L41F | Ctc | Ttc | 7 | 7 | B.1.177.86 | 0.001284 |
ORF3a | 41 | L41F | Ctc | Ttc | 7 | 7 | B.1.36.35 | 0.018229 |
ORF3a | 41 | L41F | Ctc | Ttc | 7 | 7 | B.40 | 0.00255 |
ORF3a | 41 | L41F | Ctc | Ttc | 7 | 7 | D.2 | 0.000525 |
ORF3a | 41 | L41F | Ctc | Ttc | 6 | 6 | AY.23 | 0.000418 |
ORF3a | 41 | L41F | Ctc | Ttc | 6 | 6 | AY.9.2 | 0.00022 |
ORF3a | 41 | L41F | Ctc | Ttc | 6 | 6 | B.1.1.187 | 0.053097 |
ORF3a | 41 | L41F | Ctc | Ttc | 6 | 6 | B.1.1.311 | 0.002149 |
ORF3a | 41 | L41F | Ctc | Ttc | 6 | 6 | B.1.195 | 0.030151 |
ORF3a | 41 | L41F | Ctc | Ttc | 6 | 6 | B.1.36.17 | 0.002964 |
ORF3a | 41 | L41F | Ctc | Ttc | 6 | 6 | B.1.427 | 0.000303 |
ORF3a | 41 | L41F | Ctc | Ttc | 6 | 6 | B.1.438.1 | 0.000644 |
ORF3a | 41 | L41F | Ctc | Ttc | 6 | 6 | P.1.7 | 0.001916 |
ORF3a | 41 | L41F | Ctc | Ttc | 6 | 6 | P.2 | 0.00112 |
ORF3a | 41 | L41F | Ctc | Ttc | 6 | 6 | Q.8 | 0.000989 |
ORF3a | 41 | L41F | Ctc | Ttc | 5 | 5 | AY.100 | 0.00023 |
ORF3a | 41 | L41F | Ctc | Ttc | 5 | 5 | AY.117 | 0.000423 |
ORF3a | 41 | L41F | Ctc | Ttc | 5 | 5 | AY.118 | 0.000313 |
ORF3a | 41 | L41F | Ctc | Ttc | 5 | 5 | AY.37 | 0.00158 |
ORF3a | 41 | L41F | Ctc | Ttc | 5 | 5 | AY.46 | 0.00052 |
ORF3a | 41 | L41F | Ctc | Ttc | 5 | 5 | AY.84 | 0.002187 |
ORF3a | 41 | L41F | Ctc | Ttc | 5 | 5 | AY.90 | 0.003422 |
ORF3a | 41 | L41F | Ctc | Ttc | 5 | 5 | C.36.2 | 0.172414 |
ORF3a | 41 | L41F | Ctc | Ttc | 5 | 5 | P.1.12 | 0.00242 |
ORF3a | 41 | L41F | Ctc | Ttc | 5 | 5 | Q.1 | 0.000632 |
ORF3a | 41 | L41F | Ctc | Ttc | 4 | 4 | A | 0.001548 |
ORF3a | 41 | L41F | Ctc | Ttc | 4 | 4 | A.27 | 0.006623 |
ORF3a | 41 | L41F | Ctc | Ttc | 4 | 4 | AA.1 | 0.028986 |
ORF3a | 41 | L41F | Ctc | Ttc | 4 | 4 | AY.111 | 0.000733 |
ORF3a | 41 | L41F | Ctc | Ttc | 4 | 4 | AY.121 | 0.000541 |
ORF3a | 41 | L41F | Ctc | Ttc | 4 | 4 | AY.4.5 | 0.00043 |
ORF3a | 41 | L41F | Ctc | Ttc | 4 | 4 | AY.46.6 | 0.000289 |
ORF3a | 41 | L41F | Ctc | Ttc | 4 | 4 | AY.87 | 0.003331 |
ORF3a | 41 | L41F | Ctc | Ttc | 4 | 4 | B.1.221 | 0.000284 |
ORF3a | 41 | L41F | Ctc | Ttc | 4 | 4 | B.1.221.1 | 0.011628 |
ORF3a | 41 | L41F | Ctc | Ttc | 4 | 4 | P.1.15 | 0.000929 |
ORF3a | 41 | L41F | Ctc | Ttc | 3 | 3 | AY.101 | 0.001471 |
ORF3a | 41 | L41F | Ctc | Ttc | 3 | 3 | AY.110 | 0.000338 |
ORF3a | 41 | L41F | Ctc | Ttc | 3 | 3 | AY.116 | 0.00086 |
ORF3a | 41 | L41F | Ctc | Ttc | 3 | 3 | AY.27 | 0.000194 |
ORF3a | 41 | L41F | Ctc | Ttc | 3 | 3 | AY.4.4 | 0.001227 |
ORF3a | 41 | L41F | Ctc | Ttc | 3 | 3 | AY.74 | 0.000347 |
ORF3a | 41 | L41F | Ctc | Ttc | 3 | 3 | AY.9.1 | 0.000251 |
ORF3a | 41 | L41F | Ctc | Ttc | 3 | 3 | AY.93 | 0.000819 |
ORF3a | 41 | L41F | Ctc | Ttc | 3 | 3 | B.1.1.28 | 0.000934 |
ORF3a | 41 | L41F | Ctc | Ttc | 3 | 3 | B.1.1.33 | 0.001263 |
ORF3a | 41 | L41F | Ctc | Ttc | 3 | 3 | B.1.1.369 | 0.001339 |
ORF3a | 41 | L41F | Ctc | Ttc | 3 | 3 | B.1.1.432 | 0.003797 |
ORF3a | 41 | L41F | Ctc | Ttc | 3 | 3 | B.1.160.26 | 0.007264 |
ORF3a | 41 | L41F | Ctc | Ttc | 3 | 3 | B.1.346 | 0.003932 |
ORF3a | 41 | L41F | Ctc | Ttc | 3 | 3 | B.1.411 | 0.011111 |
ORF3a | 41 | L41F | Ctc | Ttc | 3 | 3 | B.1.556 | 0.022556 |
ORF3a | 41 | L41F | Ctc | Ttc | 3 | 3 | P.1.1 | 0.000953 |
ORF3a | 41 | L41F | Ctc | Ttc | 3 | 3 | P.1.10 | 0.000808 |
ORF3a | 41 | L41F | Ctc | Ttc | 3 | 3 | P.1.4 | 0.00293 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | AY.108 | 0.002205 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | AY.13 | 0.000322 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | AY.14 | 0.000176 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | AY.19 | 0.002281 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | AY.34 | 0.000194 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | AY.36 | 0.000296 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | AY.38 | 0.000999 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | AY.5.4 | 0.000553 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | AY.58 | 0.001815 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | AY.60 | 0.001876 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | AY.69 | 0.000373 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | AY.85 | 0.000854 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | AY.99.2 | 0.000184 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.1.174 | 0.006757 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.1.231 | 0.006192 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.1.27 | 0.011299 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.1.294 | 0.002532 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.1.322 | 0.017544 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.1.37 | 0.000386 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.1.370 | 0.025316 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.1.55 | 0.025974 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.104 | 0.00738 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.177.40 | 0.010309 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.177.52 | 0.003515 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.177.60 | 0.000437 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.177.72 | 0.00678 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.349 | 0.00143 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.351.2 | 0.000605 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.36.29 | 0.001035 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.36.38 | 0.003284 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.362 | 0.003082 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.369 | 0.00057 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.436 | 0.002058 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.466.2 | 0.000782 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.499 | 0.002101 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.564 | 0.000852 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.595 | 0.000522 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | B.1.631 | 0.006734 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | P.1.14 | 0.000096 |
ORF3a | 41 | L41F | Ctc | Ttc | 2 | 2 | R.1 | 0.00018 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | A.1 | 0.000282 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | A.19 | 0.009434 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | A.2.5.1 | 0.004808 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AE.6 | 0.038462 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.104 | 0.001984 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.109 | 0.00074 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.11 | 0.001339 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.120.1 | 0.000321 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.41 | 0.000294 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.46.3 | 0.000934 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.63 | 0.000387 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.7.1 | 0.000113 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.70 | 0.000209 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.71 | 0.000475 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.76 | 0.004831 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.86 | 0.00083 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.88 | 0.000884 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | AY.99.1 | 0.001553 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.1.135 | 0.004695 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.1.160 | 0.02381 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.1.163 | 0.007634 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.1.170 | 0.001247 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.1.241 | 0.00207 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.1.291 | 0.000742 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.1.326 | 0.001761 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.1.385 | 0.004464 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.1.434 | 0.000349 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.1.463 | 0.0625 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.1.50 | 0.000679 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.1.513 | 0.012346 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.1.522 | 0.017241 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.126 | 0.001276 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.160.14 | 0.002119 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.160.7 | 0.002079 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.162 | 0.005025 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.170 | 0.00431 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.177.18 | 0.00116 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.177.33 | 0.001645 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.177.57 | 0.000281 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.177.69 | 0.001484 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.177.83 | 0.001481 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.214.2 | 0.0006 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.232 | 0.000537 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.326 | 0.007576 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.355 | 0.011111 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.361 | 0.001289 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.422 | 0.000812 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.428.3 | 0.012821 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.456 | 0.003268 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.459 | 0.004082 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.480 | 0.002488 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.543 | 0.01 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.544 | 0.006024 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.577 | 0.000687 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.587 | 0.001898 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.602 | 0.006536 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.605 | 0.005952 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.611 | 0.04 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.620 | 0.000946 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.627 | 0.00202 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.1.88.1 | 0.004808 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | B.6.6 | 0.000889 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | C.36 | 0.000911 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | N.4 | 0.004255 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | N.5 | 0.001767 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | P.1.6 | 0.001946 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | P.3 | 0.001595 |
ORF3a | 41 | L41F | Ctc | Ttc | 1 | 1 | Q.3 | 0.000145 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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