CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 219 | L219F | nonsyn | ttG | ttT | 2637 | 2633 | 0.998483 | 26047-26049 | |
ORF3a | 219 | L219F | nonsyn | ttG | ttC | 2637 | 4 | 0.00151688 | 26047-26049 |
Details of the mutation L219F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 219 | L219F | ttG | ttT | 2633 | 2637 | All | 0.000504 |
ORF3a | 219 | L219F | ttG | ttC | 4 | 2637 | All | 0.000001 |
ORF3a | 219 | L219F | ttG | ttT | 1580 | 1580 | AY.26 | 0.04473 |
ORF3a | 219 | L219F | ttG | ttT | 217 | 217 | B.1.617.2 | 0.000817 |
ORF3a | 219 | L219F | ttG | ttT | 185 | 185 | B.1.1.7 | 0.000166 |
ORF3a | 219 | L219F | ttG | ttT | 144 | 144 | B.1.1.37 | 0.027772 |
ORF3a | 219 | L219F | ttG | ttT | 68 | 68 | B.1.1 | 0.001234 |
ORF3a | 219 | L219F | ttG | ttT | 58 | 58 | B.1.2 | 0.000511 |
ORF3a | 219 | L219F | ttG | ttT | 30 | 30 | P.1.4 | 0.029297 |
ORF3a | 219 | L219F | ttG | ttT | 28 | 28 | AY.43 | 0.000124 |
ORF3a | 219 | L219F | ttG | ttT | 26 | 26 | B.1.177 | 0.000342 |
ORF3a | 219 | L219F | ttG | ttT | 26 | 26 | B.1.526 | 0.000611 |
ORF3a | 219 | L219F | ttG | ttT | 21 | 21 | AY.39 | 0.000519 |
ORF3a | 219 | L219F | ttG | ttT | 18 | 19 | AY.103 | 0.000112 |
ORF3a | 219 | L219F | ttG | ttC | 1 | 19 | AY.103 | 0.000006 |
ORF3a | 219 | L219F | ttG | ttT | 19 | 19 | AY.4 | 0.00003 |
ORF3a | 219 | L219F | ttG | ttT | 15 | 15 | B.1.160 | 0.000468 |
ORF3a | 219 | L219F | ttG | ttT | 14 | 14 | AY.113 | 0.001993 |
ORF3a | 219 | L219F | ttG | ttT | 12 | 12 | AY.25 | 0.000072 |
ORF3a | 219 | L219F | ttG | ttT | 12 | 12 | B.1 | 0.00011 |
ORF3a | 219 | L219F | ttG | ttT | 11 | 11 | AY.4.2 | 0.000239 |
ORF3a | 219 | L219F | ttG | ttT | 11 | 11 | AY.44 | 0.000067 |
ORF3a | 219 | L219F | ttG | ttT | 9 | 9 | AY.9.2 | 0.000331 |
ORF3a | 219 | L219F | ttG | ttT | 8 | 8 | AY.114 | 0.001849 |
ORF3a | 219 | L219F | ttG | ttT | 6 | 6 | B.1.429 | 0.000141 |
ORF3a | 219 | L219F | ttG | ttT | 6 | 6 | P.1 | 0.000095 |
ORF3a | 219 | L219F | ttG | ttT | 5 | 5 | AY.14 | 0.00044 |
ORF3a | 219 | L219F | ttG | ttT | 5 | 5 | AY.45 | 0.000608 |
ORF3a | 219 | L219F | ttG | ttT | 5 | 5 | AY.46.4 | 0.000823 |
ORF3a | 219 | L219F | ttG | ttT | 5 | 5 | AY.5 | 0.000103 |
ORF3a | 219 | L219F | ttG | ttT | 5 | 5 | AY.61 | 0.000524 |
ORF3a | 219 | L219F | ttG | ttT | 4 | 4 | AY.100 | 0.000184 |
ORF3a | 219 | L219F | ttG | ttT | 4 | 4 | B.1.177.87 | 0.002911 |
ORF3a | 219 | L219F | ttG | ttT | 4 | 4 | B.1.36.29 | 0.002069 |
ORF3a | 219 | L219F | ttG | ttT | 4 | 4 | B.1.637 | 0.000292 |
ORF3a | 219 | L219F | ttG | ttT | 3 | 3 | AY.102 | 0.00008 |
ORF3a | 219 | L219F | ttG | ttT | 3 | 3 | AY.75.1 | 0.000541 |
ORF3a | 219 | L219F | ttG | ttT | 3 | 3 | B.1.1.419 | 0.022222 |
ORF3a | 219 | L219F | ttG | ttT | 3 | 3 | B.1.474 | 0.005703 |
ORF3a | 219 | L219F | ttG | ttT | 2 | 2 | AY.116 | 0.000574 |
ORF3a | 219 | L219F | ttG | ttT | 2 | 2 | AY.121 | 0.000271 |
ORF3a | 219 | L219F | ttG | ttT | 2 | 2 | AY.23 | 0.000139 |
ORF3a | 219 | L219F | ttG | ttC | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 219 | L219F | ttG | ttT | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 219 | L219F | ttG | ttT | 2 | 2 | B.1.1.203 | 0.033898 |
ORF3a | 219 | L219F | ttG | ttT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF3a | 219 | L219F | ttG | ttT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF3a | 219 | L219F | ttG | ttT | 2 | 2 | B.1.425 | 0.005988 |
ORF3a | 219 | L219F | ttG | ttT | 2 | 2 | Q.2 | 0.001227 |
ORF3a | 219 | L219F | ttG | ttT | 2 | 2 | Q.8 | 0.00033 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.1 | 0.000396 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.10 | 0.00053 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.71 | 0.000475 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.78 | 0.001541 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.87 | 0.000833 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | AZ.5 | 0.003509 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.1.134 | 0.011364 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.1.16 | 0.055556 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 219 | L219F | ttG | ttC | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.1.344 | 0.010753 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.433 | 0.003195 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 219 | L219F | ttG | ttT | 1 | 1 | C.4 | 0.01 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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