CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 15 | L15del | del | TTG | --- | 1021 | 1021 | 1 | 25435-25437 |
Details of the mutation L15del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 15 | L15del | TTG | --- | 1021 | 1021 | All | 0.000195 |
ORF3a | 15 | L15del | TTG | --- | 288 | 288 | B.1.1.7 | 0.000258 |
ORF3a | 15 | L15del | TTG | --- | 98 | 98 | B.1.1.519 | 0.003892 |
ORF3a | 15 | L15del | TTG | --- | 90 | 90 | AY.4 | 0.00014 |
ORF3a | 15 | L15del | TTG | --- | 83 | 83 | AY.44 | 0.000505 |
ORF3a | 15 | L15del | TTG | --- | 36 | 36 | B.1.177 | 0.000474 |
ORF3a | 15 | L15del | TTG | --- | 34 | 34 | P.1 | 0.000536 |
ORF3a | 15 | L15del | TTG | --- | 26 | 26 | AY.25 | 0.000156 |
ORF3a | 15 | L15del | TTG | --- | 22 | 22 | B.1.620 | 0.020814 |
ORF3a | 15 | L15del | TTG | --- | 19 | 19 | B.1 | 0.000174 |
ORF3a | 15 | L15del | TTG | --- | 19 | 19 | B.1.617.2 | 0.000072 |
ORF3a | 15 | L15del | TTG | --- | 17 | 17 | B.1.2 | 0.00015 |
ORF3a | 15 | L15del | TTG | --- | 16 | 16 | AY.103 | 0.000099 |
ORF3a | 15 | L15del | TTG | --- | 16 | 16 | B.1.177.21 | 0.001224 |
ORF3a | 15 | L15del | TTG | --- | 16 | 16 | B.1.234 | 0.002111 |
ORF3a | 15 | L15del | TTG | --- | 10 | 10 | B.1.1.214 | 0.000555 |
ORF3a | 15 | L15del | TTG | --- | 9 | 9 | AY.4.5 | 0.000967 |
ORF3a | 15 | L15del | TTG | --- | 9 | 9 | B.1.1.318 | 0.002716 |
ORF3a | 15 | L15del | TTG | --- | 8 | 8 | B.1.429 | 0.000188 |
ORF3a | 15 | L15del | TTG | --- | 8 | 8 | B.1.623 | 0.004292 |
ORF3a | 15 | L15del | TTG | --- | 8 | 8 | B.1.630 | 0.041885 |
ORF3a | 15 | L15del | TTG | --- | 7 | 7 | AY.43 | 0.000031 |
ORF3a | 15 | L15del | TTG | --- | 7 | 7 | B.1.1.317 | 0.002882 |
ORF3a | 15 | L15del | TTG | --- | 7 | 7 | B.1.540 | 0.067961 |
ORF3a | 15 | L15del | TTG | --- | 7 | 7 | B.1.621 | 0.00062 |
ORF3a | 15 | L15del | TTG | --- | 6 | 6 | B.1.1 | 0.000109 |
ORF3a | 15 | L15del | TTG | --- | 5 | 5 | AY.29 | 0.000079 |
ORF3a | 15 | L15del | TTG | --- | 5 | 5 | B.1.177.35 | 0.003455 |
ORF3a | 15 | L15del | TTG | --- | 5 | 5 | B.1.177.86 | 0.000917 |
ORF3a | 15 | L15del | TTG | --- | 5 | 5 | B.1.609 | 0.002397 |
ORF3a | 15 | L15del | TTG | --- | 4 | 4 | AY.9.2 | 0.000147 |
ORF3a | 15 | L15del | TTG | --- | 4 | 4 | B.1.1.288 | 0.007663 |
ORF3a | 15 | L15del | TTG | --- | 4 | 4 | B.1.1.523 | 0.00625 |
ORF3a | 15 | L15del | TTG | --- | 4 | 4 | B.1.177.4 | 0.000844 |
ORF3a | 15 | L15del | TTG | --- | 4 | 4 | B.1.221 | 0.000284 |
ORF3a | 15 | L15del | TTG | --- | 3 | 3 | AY.118 | 0.000188 |
ORF3a | 15 | L15del | TTG | --- | 3 | 3 | AY.47 | 0.000093 |
ORF3a | 15 | L15del | TTG | --- | 3 | 3 | AY.5 | 0.000062 |
ORF3a | 15 | L15del | TTG | --- | 3 | 3 | B.1.258 | 0.0002 |
ORF3a | 15 | L15del | TTG | --- | 3 | 3 | B.1.506 | 0.071429 |
ORF3a | 15 | L15del | TTG | --- | 3 | 3 | B.1.637 | 0.000219 |
ORF3a | 15 | L15del | TTG | --- | 2 | 2 | AY.111 | 0.000366 |
ORF3a | 15 | L15del | TTG | --- | 2 | 2 | AY.27 | 0.000129 |
ORF3a | 15 | L15del | TTG | --- | 2 | 2 | AY.6 | 0.000082 |
ORF3a | 15 | L15del | TTG | --- | 2 | 2 | AY.71 | 0.00095 |
ORF3a | 15 | L15del | TTG | --- | 2 | 2 | AY.76 | 0.009662 |
ORF3a | 15 | L15del | TTG | --- | 2 | 2 | AY.98.1 | 0.000097 |
ORF3a | 15 | L15del | TTG | --- | 2 | 2 | B.1.1.189 | 0.003026 |
ORF3a | 15 | L15del | TTG | --- | 2 | 2 | B.1.177.10 | 0.001756 |
ORF3a | 15 | L15del | TTG | --- | 2 | 2 | B.1.177.12 | 0.000303 |
ORF3a | 15 | L15del | TTG | --- | 2 | 2 | B.1.177.60 | 0.000437 |
ORF3a | 15 | L15del | TTG | --- | 2 | 2 | B.1.177.83 | 0.002963 |
ORF3a | 15 | L15del | TTG | --- | 2 | 2 | B.1.258.3 | 0.00335 |
ORF3a | 15 | L15del | TTG | --- | 2 | 2 | B.1.351 | 0.000059 |
ORF3a | 15 | L15del | TTG | --- | 2 | 2 | B.1.427 | 0.000101 |
ORF3a | 15 | L15del | TTG | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF3a | 15 | L15del | TTG | --- | 2 | 2 | P.1.9 | 0.009615 |
ORF3a | 15 | L15del | TTG | --- | 2 | 2 | R.1 | 0.00018 |
ORF3a | 15 | L15del | TTG | --- | 2 | 2 | U.3 | 0.007722 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | AY.60 | 0.000938 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B | 0.000128 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.1.133 | 0.008475 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.1.234 | 0.012048 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.1.351 | 0.002793 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.1.55 | 0.012987 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.1.98 | 0.018519 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.128 | 0.000635 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.142 | 0.002899 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.160.16 | 0.000929 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.160.26 | 0.002421 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.195 | 0.005025 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.221.1 | 0.002907 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.363 | 0.012987 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.408 | 0.00369 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.422 | 0.000812 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | B.3.1 | 0.001658 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | D.2 | 0.000075 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | P.2 | 0.000187 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 15 | L15del | TTG | --- | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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