CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 106 | L106F | nonsyn | Ctc | Ttc | 12426 | 12389 | 0.997022 | 25708-25710 | |
ORF3a | 106 | L106F | nonsyn | CtC | TtT | 12426 | 37 | 0.00297763 | 25708-25710 |
Details of the mutation L106F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 106 | L106F | Ctc | Ttc | 12389 | 12426 | All | 0.00237 |
ORF3a | 106 | L106F | CtC | TtT | 37 | 12426 | All | 0.000007 |
ORF3a | 106 | L106F | Ctc | Ttc | 4227 | 4229 | B.1.1.7 | 0.003784 |
ORF3a | 106 | L106F | CtC | TtT | 2 | 4229 | B.1.1.7 | 0.000002 |
ORF3a | 106 | L106F | Ctc | Ttc | 1664 | 1666 | B.1.621 | 0.147296 |
ORF3a | 106 | L106F | CtC | TtT | 2 | 1666 | B.1.621 | 0.000177 |
ORF3a | 106 | L106F | Ctc | Ttc | 647 | 647 | AY.4 | 0.001007 |
ORF3a | 106 | L106F | Ctc | Ttc | 547 | 548 | AY.25 | 0.00329 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 548 | AY.25 | 0.000006 |
ORF3a | 106 | L106F | Ctc | Ttc | 493 | 493 | AY.43 | 0.002184 |
ORF3a | 106 | L106F | Ctc | Ttc | 435 | 435 | P.1 | 0.006853 |
ORF3a | 106 | L106F | Ctc | Ttc | 312 | 312 | B.1.617.2 | 0.001175 |
ORF3a | 106 | L106F | Ctc | Ttc | 289 | 289 | B.1.351 | 0.008591 |
ORF3a | 106 | L106F | Ctc | Ttc | 279 | 279 | B.1.36 | 0.040706 |
ORF3a | 106 | L106F | Ctc | Ttc | 263 | 264 | AY.44 | 0.001601 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 264 | AY.44 | 0.000006 |
ORF3a | 106 | L106F | Ctc | Ttc | 227 | 228 | B.1.2 | 0.001999 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 228 | B.1.2 | 0.000009 |
ORF3a | 106 | L106F | Ctc | Ttc | 176 | 177 | B.1 | 0.001612 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 177 | B.1 | 0.000009 |
ORF3a | 106 | L106F | Ctc | Ttc | 122 | 123 | AY.103 | 0.000758 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 123 | AY.103 | 0.000006 |
ORF3a | 106 | L106F | Ctc | Ttc | 123 | 123 | C.35 | 0.095201 |
ORF3a | 106 | L106F | Ctc | Ttc | 106 | 106 | AY.47 | 0.003297 |
ORF3a | 106 | L106F | Ctc | Ttc | 102 | 102 | AY.3 | 0.001015 |
ORF3a | 106 | L106F | Ctc | Ttc | 95 | 96 | B.1.1 | 0.001723 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 96 | B.1.1 | 0.000018 |
ORF3a | 106 | L106F | Ctc | Ttc | 92 | 92 | AY.20 | 0.003576 |
ORF3a | 106 | L106F | Ctc | Ttc | 86 | 86 | B.1.1.519 | 0.003415 |
ORF3a | 106 | L106F | Ctc | Ttc | 75 | 75 | B.1.429 | 0.001765 |
ORF3a | 106 | L106F | Ctc | Ttc | 69 | 69 | A.23.1 | 0.048592 |
ORF3a | 106 | L106F | Ctc | Ttc | 63 | 63 | AY.4.2 | 0.001366 |
ORF3a | 106 | L106F | Ctc | Ttc | 62 | 62 | AY.5.4 | 0.017156 |
ORF3a | 106 | L106F | Ctc | Ttc | 62 | 62 | B.1.526 | 0.001457 |
ORF3a | 106 | L106F | Ctc | Ttc | 61 | 61 | B.1.177.53 | 0.145933 |
ORF3a | 106 | L106F | Ctc | Ttc | 55 | 55 | AY.113 | 0.007831 |
ORF3a | 106 | L106F | Ctc | Ttc | 50 | 50 | B.1.177 | 0.000658 |
ORF3a | 106 | L106F | Ctc | Ttc | 49 | 49 | AY.5 | 0.001012 |
ORF3a | 106 | L106F | Ctc | Ttc | 48 | 48 | B.1.311 | 0.01318 |
ORF3a | 106 | L106F | Ctc | Ttc | 46 | 46 | P.1.14 | 0.002199 |
ORF3a | 106 | L106F | Ctc | Ttc | 41 | 41 | AY.100 | 0.001886 |
ORF3a | 106 | L106F | Ctc | Ttc | 40 | 40 | B.1.1.222 | 0.00816 |
ORF3a | 106 | L106F | Ctc | Ttc | 39 | 39 | AY.102 | 0.001034 |
ORF3a | 106 | L106F | Ctc | Ttc | 37 | 37 | B.1.279 | 0.019004 |
ORF3a | 106 | L106F | Ctc | Ttc | 34 | 34 | AY.39.1 | 0.001347 |
ORF3a | 106 | L106F | Ctc | Ttc | 34 | 34 | AY.4.1 | 0.025074 |
ORF3a | 106 | L106F | Ctc | Ttc | 33 | 33 | AY.98 | 0.002607 |
ORF3a | 106 | L106F | Ctc | Ttc | 31 | 31 | AY.39 | 0.000766 |
ORF3a | 106 | L106F | Ctc | Ttc | 31 | 31 | B.1.349 | 0.022159 |
ORF3a | 106 | L106F | Ctc | Ttc | 30 | 30 | P.2 | 0.005599 |
ORF3a | 106 | L106F | Ctc | Ttc | 25 | 25 | B.1.36.18 | 0.010504 |
ORF3a | 106 | L106F | Ctc | Ttc | 23 | 23 | B.1.1.153 | 0.025192 |
ORF3a | 106 | L106F | Ctc | Ttc | 22 | 22 | AY.119 | 0.000777 |
ORF3a | 106 | L106F | CtC | TtT | 18 | 19 | B.1.160 | 0.000561 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 19 | B.1.160 | 0.000031 |
ORF3a | 106 | L106F | Ctc | Ttc | 19 | 19 | B.1.427 | 0.000959 |
ORF3a | 106 | L106F | Ctc | Ttc | 18 | 18 | B.1.1.372 | 0.012397 |
ORF3a | 106 | L106F | Ctc | Ttc | 18 | 18 | B.1.177.35 | 0.01244 |
ORF3a | 106 | L106F | Ctc | Ttc | 17 | 17 | AY.26 | 0.000481 |
ORF3a | 106 | L106F | Ctc | Ttc | 16 | 16 | B.1.177.16 | 0.010631 |
ORF3a | 106 | L106F | Ctc | Ttc | 15 | 15 | B.1.1.514 | 0.576923 |
ORF3a | 106 | L106F | Ctc | Ttc | 14 | 14 | AY.48 | 0.006512 |
ORF3a | 106 | L106F | Ctc | Ttc | 14 | 14 | AY.6 | 0.000576 |
ORF3a | 106 | L106F | Ctc | Ttc | 14 | 14 | B.1.1.1 | 0.004574 |
ORF3a | 106 | L106F | Ctc | Ttc | 14 | 14 | B.1.1.50 | 0.009504 |
ORF3a | 106 | L106F | Ctc | Ttc | 14 | 14 | B.1.391 | 0.015784 |
ORF3a | 106 | L106F | Ctc | Ttc | 13 | 13 | AY.13 | 0.002093 |
ORF3a | 106 | L106F | Ctc | Ttc | 13 | 13 | AY.29 | 0.000205 |
ORF3a | 106 | L106F | Ctc | Ttc | 13 | 13 | AY.45 | 0.001582 |
ORF3a | 106 | L106F | Ctc | Ttc | 12 | 12 | B.1.177.82 | 0.005728 |
ORF3a | 106 | L106F | Ctc | Ttc | 12 | 12 | B.1.234 | 0.001583 |
ORF3a | 106 | L106F | Ctc | Ttc | 12 | 12 | B.1.351.3 | 0.010517 |
ORF3a | 106 | L106F | Ctc | Ttc | 12 | 12 | B.1.36.29 | 0.006208 |
ORF3a | 106 | L106F | Ctc | Ttc | 12 | 12 | P.1.17 | 0.001941 |
ORF3a | 106 | L106F | Ctc | Ttc | 12 | 12 | Q.1 | 0.001516 |
ORF3a | 106 | L106F | Ctc | Ttc | 11 | 11 | AY.36 | 0.00163 |
ORF3a | 106 | L106F | Ctc | Ttc | 11 | 11 | AY.42 | 0.000443 |
ORF3a | 106 | L106F | Ctc | Ttc | 10 | 10 | AY.120 | 0.000372 |
ORF3a | 106 | L106F | Ctc | Ttc | 10 | 10 | AY.3.1 | 0.000853 |
ORF3a | 106 | L106F | Ctc | Ttc | 10 | 10 | AY.37 | 0.003161 |
ORF3a | 106 | L106F | Ctc | Ttc | 10 | 10 | AY.61 | 0.001048 |
ORF3a | 106 | L106F | Ctc | Ttc | 10 | 10 | AY.9.2 | 0.000367 |
ORF3a | 106 | L106F | Ctc | Ttc | 10 | 10 | AZ.1 | 0.008673 |
ORF3a | 106 | L106F | Ctc | Ttc | 10 | 10 | B.1.1.148 | 0.087719 |
ORF3a | 106 | L106F | Ctc | Ttc | 10 | 10 | B.1.177.42 | 0.008945 |
ORF3a | 106 | L106F | Ctc | Ttc | 10 | 10 | B.1.433 | 0.031949 |
ORF3a | 106 | L106F | Ctc | Ttc | 9 | 9 | AY.117 | 0.000761 |
ORF3a | 106 | L106F | Ctc | Ttc | 9 | 9 | AY.120.2.1 | 0.004484 |
ORF3a | 106 | L106F | Ctc | Ttc | 9 | 9 | AY.46.4 | 0.001481 |
ORF3a | 106 | L106F | Ctc | Ttc | 9 | 9 | AY.74 | 0.001041 |
ORF3a | 106 | L106F | Ctc | Ttc | 9 | 9 | AY.9 | 0.000608 |
ORF3a | 106 | L106F | Ctc | Ttc | 8 | 8 | AY.14 | 0.000704 |
ORF3a | 106 | L106F | Ctc | Ttc | 8 | 8 | AY.33 | 0.000534 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 8 | AY.34 | 0.000679 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 8 | AY.34 | 0.000097 |
ORF3a | 106 | L106F | Ctc | Ttc | 8 | 8 | AY.46 | 0.000833 |
ORF3a | 106 | L106F | Ctc | Ttc | 8 | 8 | AY.98.1 | 0.000387 |
ORF3a | 106 | L106F | Ctc | Ttc | 8 | 8 | B.1.1.216 | 0.007124 |
ORF3a | 106 | L106F | Ctc | Ttc | 8 | 8 | B.1.1.37 | 0.001543 |
ORF3a | 106 | L106F | Ctc | Ttc | 8 | 8 | B.1.232 | 0.004299 |
ORF3a | 106 | L106F | Ctc | Ttc | 8 | 8 | C.37 | 0.000929 |
ORF3a | 106 | L106F | Ctc | Ttc | 6 | 7 | 0.333333 | |
ORF3a | 106 | L106F | CtC | TtT | 1 | 7 | 0.055556 | |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | AY.106 | 0.002344 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | AY.107 | 0.003262 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | AY.16 | 0.002658 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | AY.23 | 0.000488 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | AY.54 | 0.000667 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | AY.92 | 0.002011 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | AY.95 | 0.005327 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | B.1.1.322 | 0.061404 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | B.1.243 | 0.000487 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | B.1.517 | 0.002989 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | P.1.12 | 0.003388 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | P.4 | 0.026616 |
ORF3a | 106 | L106F | Ctc | Ttc | 6 | 6 | AY.110 | 0.000676 |
ORF3a | 106 | L106F | Ctc | Ttc | 6 | 6 | AY.79 | 0.007264 |
ORF3a | 106 | L106F | Ctc | Ttc | 6 | 6 | B.1.1.214 | 0.000333 |
ORF3a | 106 | L106F | Ctc | Ttc | 6 | 6 | B.1.1.28 | 0.001867 |
ORF3a | 106 | L106F | Ctc | Ttc | 6 | 6 | B.1.1.306 | 0.00263 |
ORF3a | 106 | L106F | Ctc | Ttc | 6 | 6 | B.1.177.4 | 0.001266 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 6 | B.1.221 | 0.000355 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 6 | B.1.221 | 0.000071 |
ORF3a | 106 | L106F | Ctc | Ttc | 6 | 6 | B.1.258.17 | 0.000624 |
ORF3a | 106 | L106F | Ctc | Ttc | 6 | 6 | B.1.564 | 0.002555 |
ORF3a | 106 | L106F | Ctc | Ttc | 6 | 6 | P.1.15 | 0.001394 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | AY.111 | 0.000916 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | AY.114 | 0.001156 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | AY.120.2 | 0.006427 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | AY.40 | 0.004822 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | AY.62 | 0.002179 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | AY.65 | 0.002665 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | AY.71 | 0.002375 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | B | 0.000639 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | B.1.1.358 | 0.172414 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | B.1.177.12 | 0.000758 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | B.1.237 | 0.024876 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | B.1.36.16 | 0.007123 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | B.1.409 | 0.003906 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | N.5 | 0.008834 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | Q.3 | 0.000725 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | AY.16.1 | 0.00188 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | AY.27 | 0.000259 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | AY.46.6 | 0.000289 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | AY.68 | 0.001095 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | AY.75 | 0.000224 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | AY.85 | 0.001709 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | AY.99.2 | 0.000369 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.1.221 | 0.040404 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.1.284 | 0.00043 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.177.54 | 0.002426 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.177.56 | 0.00267 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.177.73 | 0.002265 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.177.81 | 0.000757 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.177.86 | 0.000734 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.240 | 0.000862 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.36.35 | 0.010417 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.369 | 0.001141 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.574 | 0.008602 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.596 | 0.000349 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.623 | 0.002146 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | N.3 | 0.023256 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | P.1.1 | 0.001271 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | A.2.4 | 0.010101 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | AY.109 | 0.002219 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | AY.55 | 0.002752 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | AY.7.1 | 0.000338 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | AY.75.1 | 0.000541 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | AY.99 | 0.003148 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | B.1.1.231 | 0.009288 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | B.1.1.25 | 0.001706 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | B.1.177.87 | 0.002183 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | B.1.36.22 | 0.003623 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | B.1.396 | 0.002117 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | B.1.524 | 0.004219 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | B.1.525 | 0.000339 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | B.1.637 | 0.000219 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | C.1 | 0.007177 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | Q.8 | 0.000495 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | AY.10 | 0.00106 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | AY.108 | 0.002205 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | AY.118 | 0.000125 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | AY.121 | 0.000271 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | AY.19 | 0.002281 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | AY.24 | 0.000862 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 2 | AY.30 | 0.000396 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 2 | AY.30 | 0.000396 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | AY.53 | 0.000575 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | AY.72 | 0.002721 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | AY.84 | 0.000875 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | AY.9.1 | 0.000167 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.1.141 | 0.004024 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.1.161 | 0.007067 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.1.198 | 0.002937 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.1.277 | 0.001517 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.1.354 | 0.008772 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.1.63 | 0.000772 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.1.70 | 0.000682 |
ORF3a | 106 | L106F | CtC | TtT | 2 | 2 | B.1.14 | 0.035088 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.177.5 | 0.002484 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.177.7 | 0.00033 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.206 | 0.001631 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.258 | 0.000133 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.258.2 | 0.009009 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.36.8 | 0.002 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.399 | 0.003868 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.456 | 0.006536 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.459 | 0.008163 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.470 | 0.002809 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.497 | 0.00063 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.499 | 0.002101 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.617.3 | 0.00597 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.621.1 | 0.001012 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.625 | 0.004706 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.633 | 0.083333 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.3 | 0.001661 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.4.7 | 0.020202 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | C.36.3 | 0.001134 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | Q.2 | 0.001227 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | A | 0.000387 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | A.1 | 0.000282 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | A.11 | 0.058824 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | A.19 | 0.009434 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AE.8 | 0.000489 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AU.3 | 0.00211 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.115 | 0.005208 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.49 | 0.003195 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.52 | 0.000814 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.57 | 0.000656 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.80 | 0.001129 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.82 | 0.001357 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AZ.5 | 0.003509 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.157 | 0.000913 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.164 | 0.005155 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.176 | 0.000439 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.210 | 0.005714 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.219 | 0.005 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.294 | 0.001266 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.297 | 0.002237 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.351 | 0.002793 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.377 | 0.001381 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.389 | 0.006061 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.411 | 0.014706 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.416 | 0.000905 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.433 | 0.001425 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.434 | 0.000349 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.47 | 0.005348 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.507 | 0.008696 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.518 | 0.006329 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.77 | 0.041667 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.83 | 0.00271 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.88 | 0.071429 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.89 | 0.006061 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.110.3 | 0.000718 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.111 | 0.001175 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 1 | B.1.160.20 | 0.008929 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.177.33 | 0.001645 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.177.43 | 0.001477 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.177.57 | 0.000281 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.177.77 | 0.000726 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.177.79 | 0.002342 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.214.2 | 0.0006 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.221.3 | 0.000833 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.239 | 0.001221 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.241 | 0.000812 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.260 | 0.003344 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 1 | B.1.333 | 0.010526 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.36.25 | 0.002208 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.36.31 | 0.001751 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.36.39 | 0.002217 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.362 | 0.001541 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.380 | 0.006623 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.381 | 0.007812 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.398 | 0.002976 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.428 | 0.00102 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.432 | 0.011236 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.462 | 0.007246 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.466 | 0.023256 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.491 | 0.052632 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.503 | 0.002488 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.511 | 0.034483 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.577 | 0.000687 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.582 | 0.000491 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.597 | 0.00463 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.634 | 0.003425 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.4 | 0.002208 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.40 | 0.000364 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | C.12 | 0.007194 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | N.2 | 0.038462 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | N.4 | 0.004255 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | P.1.10 | 0.000269 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | P.1.13 | 0.000898 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | P.1.7 | 0.000319 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|