CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 75 | K75N | nonsyn | aaG | aaT | 7408 | 7402 | 0.99919 | 25615-25617 | |
ORF3a | 75 | K75N | nonsyn | aaG | aaC | 7408 | 6 | 0.000809935 | 25615-25617 |
Details of the mutation K75N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 75 | K75N | aaG | aaT | 7402 | 7408 | All | 0.001416 |
ORF3a | 75 | K75N | aaG | aaC | 6 | 7408 | All | 0.000001 |
ORF3a | 75 | K75N | aaG | aaT | 2777 | 2777 | B.1.1.311 | 0.994628 |
ORF3a | 75 | K75N | aaG | aaT | 1477 | 1477 | B.1.1.7 | 0.001322 |
ORF3a | 75 | K75N | aaG | aaT | 541 | 541 | AY.43 | 0.002397 |
ORF3a | 75 | K75N | aaG | aaT | 380 | 380 | B.1.1 | 0.006894 |
ORF3a | 75 | K75N | aaG | aaT | 283 | 283 | AY.3 | 0.002815 |
ORF3a | 75 | K75N | aaG | aaT | 159 | 159 | B.1.1.309 | 0.929825 |
ORF3a | 75 | K75N | aaG | aaT | 148 | 148 | AY.103 | 0.000919 |
ORF3a | 75 | K75N | aaG | aaT | 132 | 132 | B.1.2 | 0.001162 |
ORF3a | 75 | K75N | aaG | aaT | 117 | 119 | AY.4 | 0.000182 |
ORF3a | 75 | K75N | aaG | aaC | 2 | 119 | AY.4 | 0.000003 |
ORF3a | 75 | K75N | aaG | aaT | 113 | 113 | AY.44 | 0.000688 |
ORF3a | 75 | K75N | aaG | aaT | 107 | 107 | B.1.429 | 0.002518 |
ORF3a | 75 | K75N | aaG | aaT | 97 | 97 | B.1.617.2 | 0.000365 |
ORF3a | 75 | K75N | aaG | aaT | 85 | 85 | B.1.1.308 | 1 |
ORF3a | 75 | K75N | aaG | aaT | 82 | 82 | B.1.351 | 0.002438 |
ORF3a | 75 | K75N | aaG | aaT | 66 | 66 | B.1.1.310 | 1 |
ORF3a | 75 | K75N | aaG | aaT | 51 | 51 | B.1.258.17 | 0.005303 |
ORF3a | 75 | K75N | aaG | aaT | 50 | 50 | P.1.7 | 0.015964 |
ORF3a | 75 | K75N | aaG | aaT | 46 | 46 | B.1 | 0.000421 |
ORF3a | 75 | K75N | aaG | aaT | 45 | 45 | B.1.470 | 0.063202 |
ORF3a | 75 | K75N | aaG | aaT | 29 | 29 | AY.25 | 0.000174 |
ORF3a | 75 | K75N | aaG | aaT | 26 | 26 | AY.4.5 | 0.002795 |
ORF3a | 75 | K75N | aaG | aaT | 20 | 20 | B.1.1.415 | 1 |
ORF3a | 75 | K75N | aaG | aaT | 19 | 19 | AY.102 | 0.000504 |
ORF3a | 75 | K75N | aaG | aaT | 19 | 19 | AY.33 | 0.001269 |
ORF3a | 75 | K75N | aaG | aaT | 19 | 19 | P.1 | 0.000299 |
ORF3a | 75 | K75N | aaG | aaT | 16 | 16 | B.1.160 | 0.000499 |
ORF3a | 75 | K75N | aaG | aaT | 16 | 16 | R.1 | 0.00144 |
ORF3a | 75 | K75N | aaG | aaT | 14 | 14 | B.1.1.345 | 0.608696 |
ORF3a | 75 | K75N | aaG | aaT | 13 | 13 | AY.45 | 0.001582 |
ORF3a | 75 | K75N | aaG | aaT | 12 | 12 | AY.26 | 0.00034 |
ORF3a | 75 | K75N | aaG | aaT | 12 | 12 | AY.5 | 0.000248 |
ORF3a | 75 | K75N | aaG | aaT | 12 | 12 | B.1.177 | 0.000158 |
ORF3a | 75 | K75N | aaG | aaT | 12 | 12 | P.1.17 | 0.001941 |
ORF3a | 75 | K75N | aaG | aaT | 11 | 11 | B.1.1.50 | 0.007468 |
ORF3a | 75 | K75N | aaG | aaT | 10 | 10 | AY.120 | 0.000372 |
ORF3a | 75 | K75N | aaG | aaT | 10 | 10 | AY.29 | 0.000158 |
ORF3a | 75 | K75N | aaG | aaT | 10 | 10 | AY.41 | 0.002939 |
ORF3a | 75 | K75N | aaG | aaT | 9 | 9 | AY.119 | 0.000318 |
ORF3a | 75 | K75N | aaG | aaT | 9 | 9 | AY.23 | 0.000628 |
ORF3a | 75 | K75N | aaG | aaT | 9 | 9 | B.1.1.28 | 0.002801 |
ORF3a | 75 | K75N | aaG | aaT | 9 | 9 | B.1.243 | 0.000626 |
ORF3a | 75 | K75N | aaG | aaT | 8 | 8 | AY.20 | 0.000311 |
ORF3a | 75 | K75N | aaG | aaT | 7 | 7 | AY.39 | 0.000173 |
ORF3a | 75 | K75N | aaG | aaT | 7 | 7 | AY.84 | 0.003062 |
ORF3a | 75 | K75N | aaG | aaT | 7 | 7 | AY.98 | 0.000553 |
ORF3a | 75 | K75N | aaG | aaT | 7 | 7 | AY.99.2 | 0.000645 |
ORF3a | 75 | K75N | aaG | aaT | 7 | 7 | B.1.1.25 | 0.00398 |
ORF3a | 75 | K75N | aaG | aaT | 7 | 7 | B.1.1.316 | 0.006475 |
ORF3a | 75 | K75N | aaG | aaT | 7 | 7 | B.1.427 | 0.000353 |
ORF3a | 75 | K75N | aaG | aaT | 5 | 6 | AY.108 | 0.005513 |
ORF3a | 75 | K75N | aaG | aaC | 1 | 6 | AY.108 | 0.001103 |
ORF3a | 75 | K75N | aaG | aaT | 6 | 6 | AY.116 | 0.001721 |
ORF3a | 75 | K75N | aaG | aaT | 6 | 6 | AY.117 | 0.000507 |
ORF3a | 75 | K75N | aaG | aaT | 6 | 6 | AY.4.2 | 0.00013 |
ORF3a | 75 | K75N | aaG | aaT | 6 | 6 | AY.98.1 | 0.000291 |
ORF3a | 75 | K75N | aaG | aaT | 5 | 5 | AY.3.1 | 0.000426 |
ORF3a | 75 | K75N | aaG | aaT | 5 | 5 | AY.39.1 | 0.000198 |
ORF3a | 75 | K75N | aaG | aaT | 5 | 5 | AY.46 | 0.00052 |
ORF3a | 75 | K75N | aaG | aaT | 5 | 5 | AY.47 | 0.000156 |
ORF3a | 75 | K75N | aaG | aaT | 5 | 5 | AY.6 | 0.000206 |
ORF3a | 75 | K75N | aaG | aaT | 5 | 5 | B.1.1.141 | 0.01006 |
ORF3a | 75 | K75N | aaG | aaT | 5 | 5 | B.1.1.240 | 0.023474 |
ORF3a | 75 | K75N | aaG | aaT | 5 | 5 | B.1.177.21 | 0.000382 |
ORF3a | 75 | K75N | aaG | aaT | 5 | 5 | P.1.14 | 0.000239 |
ORF3a | 75 | K75N | aaG | aaT | 4 | 4 | AY.14 | 0.000352 |
ORF3a | 75 | K75N | aaG | aaT | 4 | 4 | AY.36 | 0.000593 |
ORF3a | 75 | K75N | aaG | aaT | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF3a | 75 | K75N | aaG | aaT | 4 | 4 | AY.42 | 0.000161 |
ORF3a | 75 | K75N | aaG | aaT | 4 | 4 | B.1.1.214 | 0.000222 |
ORF3a | 75 | K75N | aaG | aaT | 4 | 4 | B.1.1.236 | 0.027586 |
ORF3a | 75 | K75N | aaG | aaT | 4 | 4 | B.1.221 | 0.000284 |
ORF3a | 75 | K75N | aaG | aaT | 4 | 4 | B.1.239 | 0.004884 |
ORF3a | 75 | K75N | aaG | aaT | 4 | 4 | B.1.36.31 | 0.007005 |
ORF3a | 75 | K75N | aaG | aaT | 4 | 4 | B.1.526 | 0.000094 |
ORF3a | 75 | K75N | aaG | aaT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF3a | 75 | K75N | aaG | aaT | 3 | 4 | C.37 | 0.000348 |
ORF3a | 75 | K75N | aaG | aaC | 1 | 4 | C.37 | 0.000116 |
ORF3a | 75 | K75N | aaG | aaT | 3 | 3 | AY.115 | 0.015625 |
ORF3a | 75 | K75N | aaG | aaT | 3 | 3 | AY.121 | 0.000406 |
ORF3a | 75 | K75N | aaG | aaT | 3 | 3 | AY.28 | 0.005671 |
ORF3a | 75 | K75N | aaG | aaT | 3 | 3 | AY.35 | 0.000699 |
ORF3a | 75 | K75N | aaG | aaT | 3 | 3 | AY.46.6 | 0.000217 |
ORF3a | 75 | K75N | aaG | aaT | 3 | 3 | AY.75.1 | 0.000541 |
ORF3a | 75 | K75N | aaG | aaT | 3 | 3 | AY.9.2 | 0.00011 |
ORF3a | 75 | K75N | aaG | aaT | 3 | 3 | AY.92 | 0.000862 |
ORF3a | 75 | K75N | aaG | aaT | 3 | 3 | AY.93 | 0.000819 |
ORF3a | 75 | K75N | aaG | aaT | 3 | 3 | B.1.177.56 | 0.002003 |
ORF3a | 75 | K75N | aaG | aaT | 3 | 3 | B.1.177.86 | 0.00055 |
ORF3a | 75 | K75N | aaG | aaT | 3 | 3 | B.1.22 | 0.003953 |
ORF3a | 75 | K75N | aaG | aaT | 3 | 3 | B.1.258.24 | 0.032258 |
ORF3a | 75 | K75N | aaG | aaT | 3 | 3 | B.1.466.2 | 0.001174 |
ORF3a | 75 | K75N | aaG | aaT | 3 | 3 | B.1.567 | 0.01 |
ORF3a | 75 | K75N | aaG | aaT | 3 | 3 | P.2 | 0.00056 |
ORF3a | 75 | K75N | aaG | aaT | 3 | 3 | Q.1 | 0.000379 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | AD.2 | 0.000438 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | AY.10 | 0.00106 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | AY.100 | 0.000092 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | AY.107 | 0.000932 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | AY.13 | 0.000322 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | AY.54 | 0.000191 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | AY.55 | 0.001835 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | AY.61 | 0.00021 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | AY.9 | 0.000135 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | B | 0.000256 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | B.1.1.322 | 0.017544 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | B.1.147 | 0.001512 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | B.1.234 | 0.000264 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | B.1.241 | 0.001623 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | B.1.258 | 0.000133 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | B.1.351.5 | 0.001199 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | B.1.36 | 0.000292 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | B.1.575 | 0.000607 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | D.2 | 0.00015 |
ORF3a | 75 | K75N | aaG | aaT | 2 | 2 | N.6 | 0.014184 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | A.19 | 0.009434 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | AY.11 | 0.001339 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | AY.19 | 0.00114 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | AY.4.3 | 0.000842 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | AY.40 | 0.000964 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | AY.51 | 0.000909 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | AY.52 | 0.000814 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | AY.60 | 0.000938 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | AY.63 | 0.000387 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | AY.7.1 | 0.000113 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | AY.70 | 0.000209 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | AY.85 | 0.000427 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | AY.95 | 0.000761 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | AZ.3 | 0.00152 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 75 | K75N | aaG | aaC | 1 | 1 | B.1.1.263 | 0.001558 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.1.378 | 0.007299 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.1.517 | 0.006803 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.1.54 | 0.003021 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.126 | 0.001276 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.160.24 | 0.004425 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.167 | 0.007812 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.177.31 | 0.011494 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.210 | 0.002132 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.236 | 0.002053 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.240 | 0.000216 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.252 | 0.006623 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.270 | 0.005618 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.36.8 | 0.001 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.456 | 0.003268 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | B.1.524 | 0.001406 |
ORF3a | 75 | K75N | aaG | aaC | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | C.33 | 0.058824 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | C.35 | 0.000774 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | N.4 | 0.004255 |
ORF3a | 75 | K75N | aaG | aaT | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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