CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = K75N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a75K75NnonsynaaGaaT740874020.9991925615-25617
ORF3a75K75NnonsynaaGaaC740860.00080993525615-25617

Details of the mutation K75N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a75K75NaaGaaT74027408All0.001416
ORF3a75K75NaaGaaC67408All0.000001
ORF3a75K75NaaGaaT27772777B.1.1.3110.994628
ORF3a75K75NaaGaaT14771477B.1.1.70.001322
ORF3a75K75NaaGaaT541541AY.430.002397
ORF3a75K75NaaGaaT380380B.1.10.006894
ORF3a75K75NaaGaaT283283AY.30.002815
ORF3a75K75NaaGaaT159159B.1.1.3090.929825
ORF3a75K75NaaGaaT148148AY.1030.000919
ORF3a75K75NaaGaaT132132B.1.20.001162
ORF3a75K75NaaGaaT117119AY.40.000182
ORF3a75K75NaaGaaC2119AY.40.000003
ORF3a75K75NaaGaaT113113AY.440.000688
ORF3a75K75NaaGaaT107107B.1.4290.002518
ORF3a75K75NaaGaaT9797B.1.617.20.000365
ORF3a75K75NaaGaaT8585B.1.1.3081
ORF3a75K75NaaGaaT8282B.1.3510.002438
ORF3a75K75NaaGaaT6666B.1.1.3101
ORF3a75K75NaaGaaT5151B.1.258.170.005303
ORF3a75K75NaaGaaT5050P.1.70.015964
ORF3a75K75NaaGaaT4646B.10.000421
ORF3a75K75NaaGaaT4545B.1.4700.063202
ORF3a75K75NaaGaaT2929AY.250.000174
ORF3a75K75NaaGaaT2626AY.4.50.002795
ORF3a75K75NaaGaaT2020B.1.1.4151
ORF3a75K75NaaGaaT1919AY.1020.000504
ORF3a75K75NaaGaaT1919AY.330.001269
ORF3a75K75NaaGaaT1919P.10.000299
ORF3a75K75NaaGaaT1616B.1.1600.000499
ORF3a75K75NaaGaaT1616R.10.00144
ORF3a75K75NaaGaaT1414B.1.1.3450.608696
ORF3a75K75NaaGaaT1313AY.450.001582
ORF3a75K75NaaGaaT1212AY.260.00034
ORF3a75K75NaaGaaT1212AY.50.000248
ORF3a75K75NaaGaaT1212B.1.1770.000158
ORF3a75K75NaaGaaT1212P.1.170.001941
ORF3a75K75NaaGaaT1111B.1.1.500.007468
ORF3a75K75NaaGaaT1010AY.1200.000372
ORF3a75K75NaaGaaT1010AY.290.000158
ORF3a75K75NaaGaaT1010AY.410.002939
ORF3a75K75NaaGaaT99AY.1190.000318
ORF3a75K75NaaGaaT99AY.230.000628
ORF3a75K75NaaGaaT99B.1.1.280.002801
ORF3a75K75NaaGaaT99B.1.2430.000626
ORF3a75K75NaaGaaT88AY.200.000311
ORF3a75K75NaaGaaT77AY.390.000173
ORF3a75K75NaaGaaT77AY.840.003062
ORF3a75K75NaaGaaT77AY.980.000553
ORF3a75K75NaaGaaT77AY.99.20.000645
ORF3a75K75NaaGaaT77B.1.1.250.00398
ORF3a75K75NaaGaaT77B.1.1.3160.006475
ORF3a75K75NaaGaaT77B.1.4270.000353
ORF3a75K75NaaGaaT56AY.1080.005513
ORF3a75K75NaaGaaC16AY.1080.001103
ORF3a75K75NaaGaaT66AY.1160.001721
ORF3a75K75NaaGaaT66AY.1170.000507
ORF3a75K75NaaGaaT66AY.4.20.00013
ORF3a75K75NaaGaaT66AY.98.10.000291
ORF3a75K75NaaGaaT55AY.3.10.000426
ORF3a75K75NaaGaaT55AY.39.10.000198
ORF3a75K75NaaGaaT55AY.460.00052
ORF3a75K75NaaGaaT55AY.470.000156
ORF3a75K75NaaGaaT55AY.60.000206
ORF3a75K75NaaGaaT55B.1.1.1410.01006
ORF3a75K75NaaGaaT55B.1.1.2400.023474
ORF3a75K75NaaGaaT55B.1.177.210.000382
ORF3a75K75NaaGaaT55P.1.140.000239
ORF3a75K75NaaGaaT44AY.140.000352
ORF3a75K75NaaGaaT44AY.360.000593
ORF3a75K75NaaGaaT44AY.4.2.10.000596
ORF3a75K75NaaGaaT44AY.420.000161
ORF3a75K75NaaGaaT44B.1.1.2140.000222
ORF3a75K75NaaGaaT44B.1.1.2360.027586
ORF3a75K75NaaGaaT44B.1.2210.000284
ORF3a75K75NaaGaaT44B.1.2390.004884
ORF3a75K75NaaGaaT44B.1.36.310.007005
ORF3a75K75NaaGaaT44B.1.5260.000094
ORF3a75K75NaaGaaT44B.1.617.10.000516
ORF3a75K75NaaGaaT34C.370.000348
ORF3a75K75NaaGaaC14C.370.000116
ORF3a75K75NaaGaaT33AY.1150.015625
ORF3a75K75NaaGaaT33AY.1210.000406
ORF3a75K75NaaGaaT33AY.280.005671
ORF3a75K75NaaGaaT33AY.350.000699
ORF3a75K75NaaGaaT33AY.46.60.000217
ORF3a75K75NaaGaaT33AY.75.10.000541
ORF3a75K75NaaGaaT33AY.9.20.00011
ORF3a75K75NaaGaaT33AY.920.000862
ORF3a75K75NaaGaaT33AY.930.000819
ORF3a75K75NaaGaaT33B.1.177.560.002003
ORF3a75K75NaaGaaT33B.1.177.860.00055
ORF3a75K75NaaGaaT33B.1.220.003953
ORF3a75K75NaaGaaT33B.1.258.240.032258
ORF3a75K75NaaGaaT33B.1.466.20.001174
ORF3a75K75NaaGaaT33B.1.5670.01
ORF3a75K75NaaGaaT33P.20.00056
ORF3a75K75NaaGaaT33Q.10.000379
ORF3a75K75NaaGaaT22AD.20.000438
ORF3a75K75NaaGaaT22AY.100.00106
ORF3a75K75NaaGaaT22AY.1000.000092
ORF3a75K75NaaGaaT22AY.1070.000932
ORF3a75K75NaaGaaT22AY.130.000322
ORF3a75K75NaaGaaT22AY.540.000191
ORF3a75K75NaaGaaT22AY.550.001835
ORF3a75K75NaaGaaT22AY.610.00021
ORF3a75K75NaaGaaT22AY.90.000135
ORF3a75K75NaaGaaT22B0.000256
ORF3a75K75NaaGaaT22B.1.1.3180.000604
ORF3a75K75NaaGaaT22B.1.1.3220.017544
ORF3a75K75NaaGaaT22B.1.1470.001512
ORF3a75K75NaaGaaT22B.1.177.70.00033
ORF3a75K75NaaGaaT22B.1.2340.000264
ORF3a75K75NaaGaaT22B.1.2410.001623
ORF3a75K75NaaGaaT22B.1.2580.000133
ORF3a75K75NaaGaaT22B.1.351.50.001199
ORF3a75K75NaaGaaT22B.1.360.000292
ORF3a75K75NaaGaaT22B.1.36.290.001035
ORF3a75K75NaaGaaT22B.1.5750.000607
ORF3a75K75NaaGaaT22D.20.00015
ORF3a75K75NaaGaaT22N.60.014184
ORF3a75K75NaaGaaT11A.190.009434
ORF3a75K75NaaGaaT11AY.1060.000335
ORF3a75K75NaaGaaT11AY.110.001339
ORF3a75K75NaaGaaT11AY.1130.000142
ORF3a75K75NaaGaaT11AY.1180.000063
ORF3a75K75NaaGaaT11AY.190.00114
ORF3a75K75NaaGaaT11AY.34.10.00051
ORF3a75K75NaaGaaT11AY.4.30.000842
ORF3a75K75NaaGaaT11AY.400.000964
ORF3a75K75NaaGaaT11AY.510.000909
ORF3a75K75NaaGaaT11AY.520.000814
ORF3a75K75NaaGaaT11AY.600.000938
ORF3a75K75NaaGaaT11AY.630.000387
ORF3a75K75NaaGaaT11AY.7.10.000113
ORF3a75K75NaaGaaT11AY.700.000209
ORF3a75K75NaaGaaT11AY.850.000427
ORF3a75K75NaaGaaT11AY.900.000684
ORF3a75K75NaaGaaT11AY.950.000761
ORF3a75K75NaaGaaT11AZ.30.00152
ORF3a75K75NaaGaaT11B.1.1.100.001115
ORF3a75K75NaaGaaT11B.1.1.1920.002309
ORF3a75K75NaaGaaT11B.1.1.2160.00089
ORF3a75K75NaaGaaT11B.1.1.2220.000204
ORF3a75K75NaaGaaC11B.1.1.2630.001558
ORF3a75K75NaaGaaT11B.1.1.330.000421
ORF3a75K75NaaGaaT11B.1.1.3780.007299
ORF3a75K75NaaGaaT11B.1.1.3980.003226
ORF3a75K75NaaGaaT11B.1.1.4090.002833
ORF3a75K75NaaGaaT11B.1.1.4160.000905
ORF3a75K75NaaGaaT11B.1.1.5170.006803
ORF3a75K75NaaGaaT11B.1.1.5190.00004
ORF3a75K75NaaGaaT11B.1.1.540.003021
ORF3a75K75NaaGaaT11B.1.1.630.000386
ORF3a75K75NaaGaaT11B.1.1260.001276
ORF3a75K75NaaGaaT11B.1.1570.002985
ORF3a75K75NaaGaaT11B.1.160.240.004425
ORF3a75K75NaaGaaT11B.1.1670.007812
ORF3a75K75NaaGaaT11B.1.177.310.011494
ORF3a75K75NaaGaaT11B.1.177.40.000211
ORF3a75K75NaaGaaT11B.1.177.60.000977
ORF3a75K75NaaGaaT11B.1.177.620.001192
ORF3a75K75NaaGaaT11B.1.2100.002132
ORF3a75K75NaaGaaT11B.1.2360.002053
ORF3a75K75NaaGaaT11B.1.2400.000216
ORF3a75K75NaaGaaT11B.1.2520.006623
ORF3a75K75NaaGaaT11B.1.2700.005618
ORF3a75K75NaaGaaT11B.1.351.20.000303
ORF3a75K75NaaGaaT11B.1.36.80.001
ORF3a75K75NaaGaaT11B.1.3690.000285
ORF3a75K75NaaGaaT11B.1.438.10.000107
ORF3a75K75NaaGaaT11B.1.4560.003268
ORF3a75K75NaaGaaT11B.1.5240.001406
ORF3a75K75NaaGaaC11B.1.5760.000907
ORF3a75K75NaaGaaT11C.330.058824
ORF3a75K75NaaGaaT11C.350.000774
ORF3a75K75NaaGaaT11N.40.004255
ORF3a75K75NaaGaaT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.