CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = G49I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a49G49InonsynGGcATc3333125537-25539

Details of the mutation G49I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a49G49IGGcATc3333All0.000006
ORF3a49G49IGGcATc66B.10.000055
ORF3a49G49IGGcATc44B.1.1.2910.00297
ORF3a49G49IGGcATc44B.1.20.000035
ORF3a49G49IGGcATc22A.10.000564
ORF3a49G49IGGcATc22B.1.1690.029851
ORF3a49G49IGGcATc22B.1.2400.000431
ORF3a49G49IGGcATc22B.1.2430.000139
ORF3a49G49IGGcATc22B.1.3330.021053
ORF3a49G49IGGcATc22B.1.4460.04
ORF3a49G49IGGcATc11AY.40.000002
ORF3a49G49IGGcATc11B.1.1.1280.007092
ORF3a49G49IGGcATc11B.1.1.80.003584
ORF3a49G49IGGcATc11B.1.1880.016667
ORF3a49G49IGGcATc11B.1.3510.00003
ORF3a49G49IGGcATc11B.1.5740.002151
ORF3a49G49IGGcATc11B.1.617.20.000004

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.