CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = G49G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a49G49GsynggCggT7266060.83471125537-25539
ORF3a49G49GsynggCggA7261090.15013825537-25539
ORF3a49G49GsynggCggG726110.015151525537-25539

Details of the mutation G49G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a49G49GggCggT606726All0.000116
ORF3a49G49GggCggA109726All0.000021
ORF3a49G49GggCggG11726All0.000002
ORF3a49G49GggCggT109112B.1.20.00096
ORF3a49G49GggCggA3112B.1.20.000026
ORF3a49G49GggCggT97103B.1.1.70.000087
ORF3a49G49GggCggG5103B.1.1.70.000004
ORF3a49G49GggCggA1103B.1.1.70.000001
ORF3a49G49GggCggT6060AY.440.000365
ORF3a49G49GggCggA5252B.1.1.3970.117117
ORF3a49G49GggCggT3840B.1.617.20.000143
ORF3a49G49GggCggA240B.1.617.20.000008
ORF3a49G49GggCggT2628B.10.000238
ORF3a49G49GggCggA128B.10.000009
ORF3a49G49GggCggG128B.10.000009
ORF3a49G49GggCggA2025B.1.10.000363
ORF3a49G49GggCggT425B.1.10.000073
ORF3a49G49GggCggG125B.1.10.000018
ORF3a49G49GggCggT2424AY.260.000679
ORF3a49G49GggCggT2324AY.40.000036
ORF3a49G49GggCggA124AY.40.000002
ORF3a49G49GggCggT1517AY.430.000066
ORF3a49G49GggCggA217AY.430.000009
ORF3a49G49GggCggT1717B.1.6090.00815
ORF3a49G49GggCggT1414AY.60.000576
ORF3a49G49GggCggT912AY.30.00009
ORF3a49G49GggCggA312AY.30.00003
ORF3a49G49GggCggT1212B.1.3510.000357
ORF3a49G49GggCggT99B.1.1770.000119
ORF3a49G49GggCggT99B.1.4270.000454
ORF3a49G49GggCggT66B.1.1.3810.24
ORF3a49G49GggCggT55AY.1030.000031
ORF3a49G49GggCggT55AY.1190.000177
ORF3a49G49GggCggT55AY.90.000338
ORF3a49G49GggCggT55B.1.1.2290.028736
ORF3a49G49GggCggA440.222222
ORF3a49G49GggCggT44AY.450.000487
ORF3a49G49GggCggA44AY.99.10.006211
ORF3a49G49GggCggA44B.1.1.3700.050633
ORF3a49G49GggCggT44B.1.2130.059701
ORF3a49G49GggCggT34B.1.2430.000209
ORF3a49G49GggCggA14B.1.2430.00007
ORF3a49G49GggCggT44B.1.5260.000094
ORF3a49G49GggCggT33AY.1180.000188
ORF3a49G49GggCggT33AY.390.000074
ORF3a49G49GggCggT33AY.470.000093
ORF3a49G49GggCggT23AY.50.000041
ORF3a49G49GggCggA13AY.50.000021
ORF3a49G49GggCggT33B.1.4000.001287
ORF3a49G49GggCggT33B.1.4290.000071
ORF3a49G49GggCggT33B.1.438.10.000322
ORF3a49G49GggCggG33B.1.5250.000339
ORF3a49G49GggCggT33P.30.004785
ORF3a49G49GggCggT22AY.1000.000092
ORF3a49G49GggCggT22AY.1020.000053
ORF3a49G49GggCggT22AY.1110.000366
ORF3a49G49GggCggT22AY.200.000078
ORF3a49G49GggCggT22AY.9.20.000073
ORF3a49G49GggCggT22AY.98.10.000097
ORF3a49G49GggCggT22B0.000256
ORF3a49G49GggCggA22B.1.1.1610.007067
ORF3a49G49GggCggT22B.1.1.5190.000079
ORF3a49G49GggCggT12B.1.2340.000132
ORF3a49G49GggCggA12B.1.2340.000132
ORF3a49G49GggCggT22B.1.2400.000431
ORF3a49G49GggCggA22B.1.3560.003454
ORF3a49G49GggCggT22B.1.5950.000522
ORF3a49G49GggCggT22B.1.5960.000174
ORF3a49G49GggCggT22B.1.617.10.000258
ORF3a49G49GggCggT22C.1.20.008511
ORF3a49G49GggCggT22P.10.000032
ORF3a49G49GggCggT22P.1.150.000465
ORF3a49G49GggCggT11AY.1130.000142
ORF3a49G49GggCggT11AY.1200.000037
ORF3a49G49GggCggT11AY.120.10.000321
ORF3a49G49GggCggT11AY.230.00007
ORF3a49G49GggCggT11AY.250.000006
ORF3a49G49GggCggT11AY.270.000065
ORF3a49G49GggCggT11AY.290.000016
ORF3a49G49GggCggT11AY.3.10.000085
ORF3a49G49GggCggT11AY.370.000316
ORF3a49G49GggCggT11AY.4.2.10.000149
ORF3a49G49GggCggT11AY.4.50.000107
ORF3a49G49GggCggT11AY.420.00004
ORF3a49G49GggCggT11AY.46.40.000165
ORF3a49G49GggCggT11AY.560.001605
ORF3a49G49GggCggT11AY.610.000105
ORF3a49G49GggCggT11AY.640.000595
ORF3a49G49GggCggA11AY.670.000464
ORF3a49G49GggCggT11AY.7.10.000113
ORF3a49G49GggCggA11AY.750.000056
ORF3a49G49GggCggT11AY.980.000079
ORF3a49G49GggCggT11AY.990.001049
ORF3a49G49GggCggT11B.1.1.1920.002309
ORF3a49G49GggCggT11B.1.1.1980.001468
ORF3a49G49GggCggT11B.1.1.2140.000055
ORF3a49G49GggCggT11B.1.1.3440.010753
ORF3a49G49GggCggT11B.1.1.4160.000905
ORF3a49G49GggCggT11B.1.1.4320.001266
ORF3a49G49GggCggT11B.1.1.500.000679
ORF3a49G49GggCggT11B.1.1600.000031
ORF3a49G49GggCggT11B.1.1640.014925
ORF3a49G49GggCggT11B.1.177.170.000821
ORF3a49G49GggCggT11B.1.177.200.001517
ORF3a49G49GggCggT11B.1.177.210.000076
ORF3a49G49GggCggT11B.1.177.730.000566
ORF3a49G49GggCggT11B.1.177.860.000183
ORF3a49G49GggCggT11B.1.2580.000067
ORF3a49G49GggCggT11B.1.258.170.000104
ORF3a49G49GggCggT11B.1.258.20.004505
ORF3a49G49GggCggT11B.1.351.30.000876
ORF3a49G49GggCggT11B.1.360.000146
ORF3a49G49GggCggT11B.1.3670.000792
ORF3a49G49GggCggT11B.1.3690.000285
ORF3a49G49GggCggT11B.1.4080.00369
ORF3a49G49GggCggA11B.1.6190.000871
ORF3a49G49GggCggT11B.1.6210.000089
ORF3a49G49GggCggG11B.1.6360.006711
ORF3a49G49GggCggA11B.1.6370.000073
ORF3a49G49GggCggT11B.40.002208
ORF3a49G49GggCggT11C.36.30.000567
ORF3a49G49GggCggT11D.20.000075
ORF3a49G49GggCggA11P.1.120.000484

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.