CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = G49C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a49G49CnonsynGgcTgc11221122125537-25539

Details of the mutation G49C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a49G49CGgcTgc11221122All0.000215
ORF3a49G49CGgcTgc293293AY.40.000456
ORF3a49G49CGgcTgc120120B.1.1.70.000107
ORF3a49G49CGgcTgc8181AY.530.023289
ORF3a49G49CGgcTgc6262AY.430.000275
ORF3a49G49CGgcTgc5757B.1.1600.001778
ORF3a49G49CGgcTgc5555B.1.617.20.000207
ORF3a49G49CGgcTgc5252AY.390.001285
ORF3a49G49CGgcTgc3232AY.440.000195
ORF3a49G49CGgcTgc2525AY.1020.000663
ORF3a49G49CGgcTgc2121AY.46.60.001516
ORF3a49G49CGgcTgc2121B.1.1.1590.098131
ORF3a49G49CGgcTgc1919B.10.000174
ORF3a49G49CGgcTgc1818B.1.10.000327
ORF3a49G49CGgcTgc1717AY.1030.000106
ORF3a49G49CGgcTgc1717AY.240.007328
ORF3a49G49CGgcTgc1616B.1.2580.001065
ORF3a49G49CGgcTgc1515AY.1000.00069
ORF3a49G49CGgcTgc1313B.1.20.000114
ORF3a49G49CGgcTgc1111B.1.4270.000555
ORF3a49G49CGgcTgc1010AY.250.00006
ORF3a49G49CGgcTgc99P.10.000142
ORF3a49G49CGgcTgc88A.20.005295
ORF3a49G49CGgcTgc77AY.290.00011
ORF3a49G49CGgcTgc77AY.30.00007
ORF3a49G49CGgcTgc77AY.750.000392
ORF3a49G49CGgcTgc55AY.1210.000677
ORF3a49G49CGgcTgc44AY.1190.000141
ORF3a49G49CGgcTgc44AY.200.000155
ORF3a49G49CGgcTgc44AY.90.00027
ORF3a49G49CGgcTgc44B.1.1.50.033333
ORF3a49G49CGgcTgc44B.1.3510.000119
ORF3a49G49CGgcTgc33AY.1080.003308
ORF3a49G49CGgcTgc33AY.140.000264
ORF3a49G49CGgcTgc33AY.160.001139
ORF3a49G49CGgcTgc33AY.330.0002
ORF3a49G49CGgcTgc33AY.450.000365
ORF3a49G49CGgcTgc33AY.540.000286
ORF3a49G49CGgcTgc33AY.780.004622
ORF3a49G49CGgcTgc33AY.920.000862
ORF3a49G49CGgcTgc33B.1.5960.000261
ORF3a49G49CGgcTgc33B.1.617.10.000387
ORF3a49G49CGgcTgc220.111111
ORF3a49G49CGgcTgc22AY.1200.000074
ORF3a49G49CGgcTgc22AY.230.000139
ORF3a49G49CGgcTgc22AY.260.000057
ORF3a49G49CGgcTgc22AY.4.20.000043
ORF3a49G49CGgcTgc22AY.420.00008
ORF3a49G49CGgcTgc22AY.46.50.000397
ORF3a49G49CGgcTgc22AY.470.000062
ORF3a49G49CGgcTgc22AY.620.000871
ORF3a49G49CGgcTgc22B.1.1.2160.001781
ORF3a49G49CGgcTgc22B.1.1.3170.000823
ORF3a49G49CGgcTgc22B.1.258.30.00335
ORF3a49G49CGgcTgc22B.1.5260.000047
ORF3a49G49CGgcTgc22B.1.6210.000177
ORF3a49G49CGgcTgc22P.1.140.000096
ORF3a49G49CGgcTgc11AY.100.00053
ORF3a49G49CGgcTgc11AY.1060.000335
ORF3a49G49CGgcTgc11AY.1130.000142
ORF3a49G49CGgcTgc11AY.1160.000287
ORF3a49G49CGgcTgc11AY.1170.000085
ORF3a49G49CGgcTgc11AY.120.000316
ORF3a49G49CGgcTgc11AY.190.00114
ORF3a49G49CGgcTgc11AY.280.00189
ORF3a49G49CGgcTgc11AY.34.10.00051
ORF3a49G49CGgcTgc11AY.4.2.10.000149
ORF3a49G49CGgcTgc11AY.400.000964
ORF3a49G49CGgcTgc11AY.5.40.000277
ORF3a49G49CGgcTgc11AY.610.000105
ORF3a49G49CGgcTgc11AY.650.000533
ORF3a49G49CGgcTgc11AY.670.000464
ORF3a49G49CGgcTgc11AY.720.001361
ORF3a49G49CGgcTgc11AY.820.001357
ORF3a49G49CGgcTgc11AY.850.000427
ORF3a49G49CGgcTgc11AY.980.000079
ORF3a49G49CGgcTgc11AY.99.20.000092
ORF3a49G49CGgcTgc11B.1.1.1710.003676
ORF3a49G49CGgcTgc11B.1.1.1860.003436
ORF3a49G49CGgcTgc11B.1.1.1890.001513
ORF3a49G49CGgcTgc11B.1.1.2860.002899
ORF3a49G49CGgcTgc11B.1.1.3260.001761
ORF3a49G49CGgcTgc11B.1.1.3450.043478
ORF3a49G49CGgcTgc11B.1.1.3980.003226
ORF3a49G49CGgcTgc11B.1.1.4200.001006
ORF3a49G49CGgcTgc11B.1.1.510.001718
ORF3a49G49CGgcTgc11B.1.1.5120.028571
ORF3a49G49CGgcTgc11B.1.1.5190.00004
ORF3a49G49CGgcTgc11B.1.1.5250.005464
ORF3a49G49CGgcTgc11B.1.160.210.020408
ORF3a49G49CGgcTgc11B.1.1770.000013
ORF3a49G49CGgcTgc11B.1.2650.001271
ORF3a49G49CGgcTgc11B.1.4000.000429
ORF3a49G49CGgcTgc11B.1.4290.000024
ORF3a49G49CGgcTgc11B.1.4520.013699
ORF3a49G49CGgcTgc11B.1.5250.000113
ORF3a49G49CGgcTgc11B.1.5900.004545
ORF3a49G49CGgcTgc11C.160.00106
ORF3a49G49CGgcTgc11C.370.000116
ORF3a49G49CGgcTgc11P.1.20.001156
ORF3a49G49CGgcTgc11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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