CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = G224V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a224G224VnonsyngGtgTt27222722126062-26064

Details of the mutation G224V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a224G224VgGtgTt27222722All0.000521
ORF3a224G224VgGtgTt285285B.1.1.280.088702
ORF3a224G224VgGtgTt283283B.1.1.70.000253
ORF3a224G224VgGtgTt212212B.1.1490.726027
ORF3a224G224VgGtgTt187187B.1.617.20.000704
ORF3a224G224VgGtgTt182182B.1.10.003302
ORF3a224G224VgGtgTt171171B.1.2430.011899
ORF3a224G224VgGtgTt122122AY.430.000541
ORF3a224G224VgGtgTt109109B.1.1.2220.022236
ORF3a224G224VgGtgTt9696B.1.1.3170.039522
ORF3a224G224VgGtgTt8787AY.250.000523
ORF3a224G224VgGtgTt8585B.10.000779
ORF3a224G224VgGtgTt6060B.1.1.5190.002383
ORF3a224G224VgGtgTt5757B.1.1.3280.966102
ORF3a224G224VgGtgTt5656AY.40.000087
ORF3a224G224VgGtgTt5151AY.1030.000317
ORF3a224G224VgGtgTt4545B.1.20.000396
ORF3a224G224VgGtgTt3939B.1.1600.001216
ORF3a224G224VgGtgTt3232AY.440.000195
ORF3a224G224VgGtgTt3131AY.1020.000822
ORF3a224G224VgGtgTt2929AY.360.004298
ORF3a224G224VgGtgTt2828B.1.1.10.009147
ORF3a224G224VgGtgTt2626B.1.4000.011154
ORF3a224G224VgGtgTt2424B.1.2100.051173
ORF3a224G224VgGtgTt2020B.1.1.500.013578
ORF3a224G224VgGtgTt1818B.1.1770.000237
ORF3a224G224VgGtgTt1717AY.30.000169
ORF3a224G224VgGtgTt1616AY.200.000622
ORF3a224G224VgGtgTt1414P.10.000221
ORF3a224G224VgGtgTt1313B.1.3970.063107
ORF3a224G224VgGtgTt1212AY.1110.002198
ORF3a224G224VgGtgTt1212AY.390.000297
ORF3a224G224VgGtgTt1212AY.7.10.001352
ORF3a224G224VgGtgTt1010AY.39.10.000396
ORF3a224G224VgGtgTt1010AY.460.001041
ORF3a224G224VgGtgTt1010B.1.177.90.013316
ORF3a224G224VgGtgTt99B.1.6090.004314
ORF3a224G224VgGtgTt99B.1.617.10.001161
ORF3a224G224VgGtgTt99B.1.6210.000797
ORF3a224G224VgGtgTt88AY.340.000776
ORF3a224G224VgGtgTt88B.1.1790.030075
ORF3a224G224VgGtgTt77AY.290.00011
ORF3a224G224VgGtgTt77B.1.1.4340.00244
ORF3a224G224VgGtgTt77B.1.360.001021
ORF3a224G224VgGtgTt66P.1.70.001916
ORF3a224G224VgGtgTt55B.1.1.3980.016129
ORF3a224G224VgGtgTt55B.1.5230.012255
ORF3a224G224VgGtgTt55C.160.005302
ORF3a224G224VgGtgTt44AY.1200.000149
ORF3a224G224VgGtgTt44AY.50.000083
ORF3a224G224VgGtgTt44AY.60.000165
ORF3a224G224VgGtgTt44AY.9.10.000335
ORF3a224G224VgGtgTt44AY.9.20.000147
ORF3a224G224VgGtgTt44B.1.5960.000349
ORF3a224G224VgGtgTt33AY.1000.000138
ORF3a224G224VgGtgTt33AY.34.10.00153
ORF3a224G224VgGtgTt33AY.350.000699
ORF3a224G224VgGtgTt33AY.420.000121
ORF3a224G224VgGtgTt33B.1.1.1660.1
ORF3a224G224VgGtgTt33B.1.1.3060.001315
ORF3a224G224VgGtgTt33B.1.1.3590.083333
ORF3a224G224VgGtgTt33B.1.3510.000089
ORF3a224G224VgGtgTt33N.90.017857
ORF3a224G224VgGtgTt33P.1.170.000485
ORF3a224G224VgGtgTt22AD.20.000438
ORF3a224G224VgGtgTt22AY.100.00106
ORF3a224G224VgGtgTt22AY.116.10.000623
ORF3a224G224VgGtgTt22AY.210.003795
ORF3a224G224VgGtgTt22AY.230.000139
ORF3a224G224VgGtgTt22AY.270.000129
ORF3a224G224VgGtgTt22AY.330.000134
ORF3a224G224VgGtgTt22AY.610.00021
ORF3a224G224VgGtgTt22B0.000256
ORF3a224G224VgGtgTt22B.1.1.2840.000215
ORF3a224G224VgGtgTt22B.1.1.3180.000604
ORF3a224G224VgGtgTt22B.1.1.330.000842
ORF3a224G224VgGtgTt22B.1.1.370.000386
ORF3a224G224VgGtgTt22B.1.177.210.000153
ORF3a224G224VgGtgTt22B.1.177.70.00033
ORF3a224G224VgGtgTt22B.1.2340.000264
ORF3a224G224VgGtgTt22B.1.2580.000133
ORF3a224G224VgGtgTt22B.1.36.290.001035
ORF3a224G224VgGtgTt22B.1.390.007812
ORF3a224G224VgGtgTt22B.1.3960.001411
ORF3a224G224VgGtgTt22B.1.4270.000101
ORF3a224G224VgGtgTt22B.1.4320.022472
ORF3a224G224VgGtgTt22B.1.5610.000794
ORF3a224G224VgGtgTt22B.60.00182
ORF3a224G224VgGtgTt22P.1.100.000539
ORF3a224G224VgGtgTt22P.20.000373
ORF3a224G224VgGtgTt22P.60.006289
ORF3a224G224VgGtgTt22R.10.00018
ORF3a224G224VgGtgTt11A0.000387
ORF3a224G224VgGtgTt11A.10.000282
ORF3a224G224VgGtgTt11AY.1010.00049
ORF3a224G224VgGtgTt11AY.1160.000287
ORF3a224G224VgGtgTt11AY.1170.000085
ORF3a224G224VgGtgTt11AY.140.000088
ORF3a224G224VgGtgTt11AY.20.000356
ORF3a224G224VgGtgTt11AY.220.002092
ORF3a224G224VgGtgTt11AY.260.000028
ORF3a224G224VgGtgTt11AY.3.10.000085
ORF3a224G224VgGtgTt11AY.380.000499
ORF3a224G224VgGtgTt11AY.4.20.000022
ORF3a224G224VgGtgTt11AY.450.000122
ORF3a224G224VgGtgTt11AY.46.20.000635
ORF3a224G224VgGtgTt11AY.46.50.000198
ORF3a224G224VgGtgTt11AY.470.000031
ORF3a224G224VgGtgTt11AY.530.000288
ORF3a224G224VgGtgTt11AY.550.000917
ORF3a224G224VgGtgTt11AY.670.000464
ORF3a224G224VgGtgTt11AY.740.000116
ORF3a224G224VgGtgTt11AY.75.10.00018
ORF3a224G224VgGtgTt11AY.760.004831
ORF3a224G224VgGtgTt11AY.90.000068
ORF3a224G224VgGtgTt11AY.980.000079
ORF3a224G224VgGtgTt11B.1.1.1180.010204
ORF3a224G224VgGtgTt11B.1.1.1630.007634
ORF3a224G224VgGtgTt11B.1.1.2140.000055
ORF3a224G224VgGtgTt11B.1.1.2160.00089
ORF3a224G224VgGtgTt11B.1.1.2200.001859
ORF3a224G224VgGtgTt11B.1.1.2630.001558
ORF3a224G224VgGtgTt11B.1.1.2770.000759
ORF3a224G224VgGtgTt11B.1.1.3720.000689
ORF3a224G224VgGtgTt11B.1.1.3890.006061
ORF3a224G224VgGtgTt11B.1.1.3970.002252
ORF3a224G224VgGtgTt11B.1.1.4090.002833
ORF3a224G224VgGtgTt11B.1.1.630.000386
ORF3a224G224VgGtgTt11B.1.1.700.000341
ORF3a224G224VgGtgTt11B.1.1.990.02381
ORF3a224G224VgGtgTt11B.1.1700.00431
ORF3a224G224VgGtgTt11B.1.177.650.000665
ORF3a224G224VgGtgTt11B.1.177.730.000566
ORF3a224G224VgGtgTt11B.1.2060.000816
ORF3a224G224VgGtgTt11B.1.2290.009709
ORF3a224G224VgGtgTt11B.1.2400.000216
ORF3a224G224VgGtgTt11B.1.258.110.000396
ORF3a224G224VgGtgTt11B.1.3410.022727
ORF3a224G224VgGtgTt11B.1.36.160.001425
ORF3a224G224VgGtgTt11B.1.36.80.001
ORF3a224G224VgGtgTt11B.1.3690.000285
ORF3a224G224VgGtgTt11B.1.3980.002976
ORF3a224G224VgGtgTt11B.1.4080.00369
ORF3a224G224VgGtgTt11B.1.4290.000024
ORF3a224G224VgGtgTt11B.1.4980.020408
ORF3a224G224VgGtgTt11B.1.5030.002488
ORF3a224G224VgGtgTt11B.1.5210.004975
ORF3a224G224VgGtgTt11B.1.6200.000946
ORF3a224G224VgGtgTt11B.1.6270.00202
ORF3a224G224VgGtgTt11B.1.6280.000352
ORF3a224G224VgGtgTt11B.1.6370.000073
ORF3a224G224VgGtgTt11B.30.000831
ORF3a224G224VgGtgTt11C.10.002392
ORF3a224G224VgGtgTt11L.30.003546
ORF3a224G224VgGtgTt11P.1.10.000318
ORF3a224G224VgGtgTt11P.1.150.000232
ORF3a224G224VgGtgTt11Q.10.000126
ORF3a224G224VgGtgTt11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.