CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = G224C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a224G224CnonsynGgtTgt3006230062126062-26064

Details of the mutation G224C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a224G224CGgtTgt3006230062All0.00575
ORF3a224G224CGgtTgt1535115351AY.750.86
ORF3a224G224CGgtTgt53625362B.1.1.70.0048
ORF3a224G224CGgtTgt19861986B.1.1600.061939
ORF3a224G224CGgtTgt11521152B.1.617.20.004338
ORF3a224G224CGgtTgt415415AY.220.868201
ORF3a224G224CGgtTgt375375AY.40.000584
ORF3a224G224CGgtTgt360360B.1.1.1700.448878
ORF3a224G224CGgtTgt305305AY.390.007537
ORF3a224G224CGgtTgt271271P.10.004269
ORF3a224G224CGgtTgt239239B.10.002189
ORF3a224G224CGgtTgt234234B.1.10.004245
ORF3a224G224CGgtTgt231231A.210.639889
ORF3a224G224CGgtTgt191191AY.90.012911
ORF3a224G224CGgtTgt188188AY.98.10.009105
ORF3a224G224CGgtTgt184184AY.440.00112
ORF3a224G224CGgtTgt160160AY.430.000709
ORF3a224G224CGgtTgt154154B.1.20.001356
ORF3a224G224CGgtTgt123123A.2.20.20777
ORF3a224G224CGgtTgt9090B.1.360.013131
ORF3a224G224CGgtTgt8888AY.250.000529
ORF3a224G224CGgtTgt8888B.1.1.5180.556962
ORF3a224G224CGgtTgt8686B.1.36.20.924731
ORF3a224G224CGgtTgt7676B.1.6090.036433
ORF3a224G224CGgtTgt7575B.1.1770.000988
ORF3a224G224CGgtTgt7171AY.1030.000441
ORF3a224G224CGgtTgt6666B.1.36.290.034144
ORF3a224G224CGgtTgt6363AY.50.001301
ORF3a224G224CGgtTgt6363B.1.1.1630.480916
ORF3a224G224CGgtTgt6161B.1.1.4320.077215
ORF3a224G224CGgtTgt5858B.1.1.3060.025427
ORF3a224G224CGgtTgt5858B.1.1.3720.039945
ORF3a224G224CGgtTgt5656B.1.1.3480.044586
ORF3a224G224CGgtTgt5656B.1.1.390.028542
ORF3a224G224CGgtTgt4444B.1.1.3680.135802
ORF3a224G224CGgtTgt4242B.1.3510.001249
ORF3a224G224CGgtTgt4242R.10.00378
ORF3a224G224CGgtTgt4141B.1.1.3840.97619
ORF3a224G224CGgtTgt4141Q.80.006761
ORF3a224G224CGgtTgt3434AY.1020.000901
ORF3a224G224CGgtTgt3333AY.1180.002067
ORF3a224G224CGgtTgt3232AY.290.000505
ORF3a224G224CGgtTgt3131B.1.1.5190.001231
ORF3a224G224CGgtTgt3131B.1.2430.002157
ORF3a224G224CGgtTgt3131B.1.4290.000729
ORF3a224G224CGgtTgt3030B.1.6370.002192
ORF3a224G224CGgtTgt2929AY.30.000288
ORF3a224G224CGgtTgt2828AY.260.000793
ORF3a224G224CGgtTgt2727B.1.1.280.008403
ORF3a224G224CGgtTgt2727B.1.177.600.005898
ORF3a224G224CGgtTgt2626AY.3.10.002217
ORF3a224G224CGgtTgt2626AY.930.0071
ORF3a224G224CGgtTgt2626B.1.596.10.242991
ORF3a224G224CGgtTgt2424B.1.1.2410.049689
ORF3a224G224CGgtTgt2424B.1.617.10.003095
ORF3a224G224CGgtTgt2424C.370.002786
ORF3a224G224CGgtTgt2323AY.200.000894
ORF3a224G224CGgtTgt2222AY.75.10.003967
ORF3a224G224CGgtTgt2222B.1.1.470.117647
ORF3a224G224CGgtTgt2020B.1.2580.001331
ORF3a224G224CGgtTgt1919AY.1000.000874
ORF3a224G224CGgtTgt1818AY.4.20.00039
ORF3a224G224CGgtTgt1818AY.620.007843
ORF3a224G224CGgtTgt1818B.1.177.580.023968
ORF3a224G224CGgtTgt1818B.1.438.10.001931
ORF3a224G224CGgtTgt1717AY.16.10.007989
ORF3a224G224CGgtTgt1717AY.650.009062
ORF3a224G224CGgtTgt1717AY.850.007262
ORF3a224G224CGgtTgt1717B.1.1.3170.006999
ORF3a224G224CGgtTgt1717P.1.140.000813
ORF3a224G224CGgtTgt1616B.1.177.210.001224
ORF3a224G224CGgtTgt1616P.20.002986
ORF3a224G224CGgtTgt1515AY.1190.00053
ORF3a224G224CGgtTgt1515B.1.6210.001328
ORF3a224G224CGgtTgt1414B.1.110.30.010057
ORF3a224G224CGgtTgt1313AY.540.00124
ORF3a224G224CGgtTgt1313B.1.1.1740.043919
ORF3a224G224CGgtTgt1313B.1.1.2140.000721
ORF3a224G224CGgtTgt1212AY.1200.000446
ORF3a224G224CGgtTgt1212AY.270.000777
ORF3a224G224CGgtTgt1212B0.001534
ORF3a224G224CGgtTgt1111AY.470.000342
ORF3a224G224CGgtTgt1111B.1.1.1821
ORF3a224G224CGgtTgt1010B.1.1.2770.007587
ORF3a224G224CGgtTgt1010B.1.5370.2
ORF3a224G224CGgtTgt1010B.1.6000.05848
ORF3a224G224CGgtTgt99P.1.40.008789
ORF3a224G224CGgtTgt88AY.1130.001139
ORF3a224G224CGgtTgt88AY.420.000322
ORF3a224G224CGgtTgt88AY.560.012841
ORF3a224G224CGgtTgt88AY.740.000925
ORF3a224G224CGgtTgt88AY.830.013793
ORF3a224G224CGgtTgt88B.1.1.3260.014085
ORF3a224G224CGgtTgt88B.1.5090.006926
ORF3a224G224CGgtTgt77AY.130.001127
ORF3a224G224CGgtTgt77AY.5.30.002362
ORF3a224G224CGgtTgt77AY.70.001372
ORF3a224G224CGgtTgt77AY.970.011905
ORF3a224G224CGgtTgt77B.1.1.10.002287
ORF3a224G224CGgtTgt77B.1.1.500.004752
ORF3a224G224CGgtTgt77B.1.1.510.012027
ORF3a224G224CGgtTgt77B.1.3110.001922
ORF3a224G224CGgtTgt77B.1.5960.00061
ORF3a224G224CGgtTgt66AY.116.10.001869
ORF3a224G224CGgtTgt66AY.1210.000812
ORF3a224G224CGgtTgt66AY.230.000418
ORF3a224G224CGgtTgt66AY.330.000401
ORF3a224G224CGgtTgt66AY.450.00073
ORF3a224G224CGgtTgt66AY.9.20.00022
ORF3a224G224CGgtTgt66AY.910.004383
ORF3a224G224CGgtTgt66AY.980.000474
ORF3a224G224CGgtTgt66B.1.4270.000303
ORF3a224G224CGgtTgt66B.1.621.10.003035
ORF3a224G224CGgtTgt66P.30.009569
ORF3a224G224CGgtTgt55AY.520.004072
ORF3a224G224CGgtTgt55B.1.1.1760.002197
ORF3a224G224CGgtTgt55B.1.1.2220.00102
ORF3a224G224CGgtTgt55B.1.1.250.002843
ORF3a224G224CGgtTgt55B.1.1.2790.005605
ORF3a224G224CGgtTgt55B.1.1.330.002104
ORF3a224G224CGgtTgt55B.1.1.3540.02193
ORF3a224G224CGgtTgt55B.1.177.430.007386
ORF3a224G224CGgtTgt55B.1.177.60.004883
ORF3a224G224CGgtTgt55B.1.5260.000118
ORF3a224G224CGgtTgt44A0.001548
ORF3a224G224CGgtTgt44AY.160.001519
ORF3a224G224CGgtTgt44AY.460.000416
ORF3a224G224CGgtTgt44AY.46.60.000289
ORF3a224G224CGgtTgt44AY.600.003752
ORF3a224G224CGgtTgt44AY.690.000747
ORF3a224G224CGgtTgt44B.1.1.1920.009238
ORF3a224G224CGgtTgt44B.1.1.3180.001207
ORF3a224G224CGgtTgt44B.1.177.650.002661
ORF3a224G224CGgtTgt44B.1.2340.000528
ORF3a224G224CGgtTgt44B.1.2400.000862
ORF3a224G224CGgtTgt44B.1.36.80.004
ORF3a224G224CGgtTgt44B.1.3690.001141
ORF3a224G224CGgtTgt44B.400.001457
ORF3a224G224CGgtTgt33AY.1170.000254
ORF3a224G224CGgtTgt33AY.120.000948
ORF3a224G224CGgtTgt33AY.240.001293
ORF3a224G224CGgtTgt33AY.39.10.000119
ORF3a224G224CGgtTgt33AY.410.000882
ORF3a224G224CGgtTgt33AY.46.50.000595
ORF3a224G224CGgtTgt33AY.610.000314
ORF3a224G224CGgtTgt33AY.700.000626
ORF3a224G224CGgtTgt33AY.790.003632
ORF3a224G224CGgtTgt33AY.900.002053
ORF3a224G224CGgtTgt33AY.99.20.000276
ORF3a224G224CGgtTgt33B.1.1.1350.014085
ORF3a224G224CGgtTgt33B.1.1.1590.014019
ORF3a224G224CGgtTgt33B.1.1.2690.00406
ORF3a224G224CGgtTgt33B.1.1.4860.004732
ORF3a224G224CGgtTgt33B.1.177.350.002073
ORF3a224G224CGgtTgt33B.1.177.570.000843
ORF3a224G224CGgtTgt33B.1.1810.058824
ORF3a224G224CGgtTgt33B.1.2210.000213
ORF3a224G224CGgtTgt33B.1.3240.004815
ORF3a224G224CGgtTgt33B.1.5380.024194
ORF3a224G224CGgtTgt33B.1.5600.013889
ORF3a224G224CGgtTgt33B.1.6270.006061
ORF3a224G224CGgtTgt33B.1.9.50.017045
ORF3a224G224CGgtTgt33C.360.002732
ORF3a224G224CGgtTgt33P.1.10.000953
ORF3a224G224CGgtTgt33P.1.160.001122
ORF3a224G224CGgtTgt33P.1.170.000485
ORF3a224G224CGgtTgt22AY.1050.001286
ORF3a224G224CGgtTgt22AY.140.000176
ORF3a224G224CGgtTgt22AY.340.000194
ORF3a224G224CGgtTgt22AY.34.10.00102
ORF3a224G224CGgtTgt22AY.550.001835
ORF3a224G224CGgtTgt22AY.590.001059
ORF3a224G224CGgtTgt22AY.670.000929
ORF3a224G224CGgtTgt22AY.7.10.000225
ORF3a224G224CGgtTgt22AY.9.10.000167
ORF3a224G224CGgtTgt22AY.920.000575
ORF3a224G224CGgtTgt22AY.950.001522
ORF3a224G224CGgtTgt22B.1.1.1980.002937
ORF3a224G224CGgtTgt22B.1.1.3110.000716
ORF3a224G224CGgtTgt22B.1.1.3120.003824
ORF3a224G224CGgtTgt22B.1.1.370.000386
ORF3a224G224CGgtTgt22B.1.1.3700.025316
ORF3a224G224CGgtTgt22B.1.1.4090.005666
ORF3a224G224CGgtTgt22B.1.1.4340.000697
ORF3a224G224CGgtTgt22B.1.1.5240.041667
ORF3a224G224CGgtTgt22B.1.1.700.000682
ORF3a224G224CGgtTgt22B.1.2100.004264
ORF3a224G224CGgtTgt22B.1.220.002635
ORF3a224G224CGgtTgt22B.1.2320.001075
ORF3a224G224CGgtTgt22B.1.2370.00995
ORF3a224G224CGgtTgt22B.1.2510.043478
ORF3a224G224CGgtTgt22B.1.2600.006689
ORF3a224G224CGgtTgt22B.1.36.160.002849
ORF3a224G224CGgtTgt22B.1.36.220.002415
ORF3a224G224CGgtTgt22B.1.3960.001411
ORF3a224G224CGgtTgt22B.1.4000.000858
ORF3a224G224CGgtTgt22B.1.428.20.066667
ORF3a224G224CGgtTgt22B.1.4620.014493
ORF3a224G224CGgtTgt22B.1.4680.011429
ORF3a224G224CGgtTgt22B.1.4710.005464
ORF3a224G224CGgtTgt22B.1.5250.000226
ORF3a224G224CGgtTgt22B.1.5510.002581
ORF3a224G224CGgtTgt22C.10.004785
ORF3a224G224CGgtTgt22C.140.008658
ORF3a224G224CGgtTgt22C.160.002121
ORF3a224G224CGgtTgt22D.20.00015
ORF3a224G224CGgtTgt22P.1.120.000968
ORF3a224G224CGgtTgt22P.70.008734
ORF3a224G224CGgtTgt22Q.40.00091
ORF3a224G224CGgtTgt22S.10.009901
ORF3a224G224CGgtTgt11A.20.000662
ORF3a224G224CGgtTgt11A.2.50.000499
ORF3a224G224CGgtTgt11A.2.5.20.001572
ORF3a224G224CGgtTgt11A.23.10.000704
ORF3a224G224CGgtTgt11AY.100.00053
ORF3a224G224CGgtTgt11AY.1080.001103
ORF3a224G224CGgtTgt11AY.1100.000113
ORF3a224G224CGgtTgt11AY.1160.000287
ORF3a224G224CGgtTgt11AY.20.000356
ORF3a224G224CGgtTgt11AY.210.001898
ORF3a224G224CGgtTgt11AY.23.10.000417
ORF3a224G224CGgtTgt11AY.300.000396
ORF3a224G224CGgtTgt11AY.360.000148
ORF3a224G224CGgtTgt11AY.370.000316
ORF3a224G224CGgtTgt11AY.4.50.000107
ORF3a224G224CGgtTgt11AY.46.10.001027
ORF3a224G224CGgtTgt11AY.46.20.000635
ORF3a224G224CGgtTgt11AY.46.40.000165
ORF3a224G224CGgtTgt11AY.480.000465
ORF3a224G224CGgtTgt11AY.530.000288
ORF3a224G224CGgtTgt11AY.580.000907
ORF3a224G224CGgtTgt11AY.60.000041
ORF3a224G224CGgtTgt11AY.640.000595
ORF3a224G224CGgtTgt11AY.680.000274
ORF3a224G224CGgtTgt11AY.7.20.000559
ORF3a224G224CGgtTgt11AY.720.001361
ORF3a224G224CGgtTgt11AY.730.000665
ORF3a224G224CGgtTgt11AY.770.001127
ORF3a224G224CGgtTgt11AY.870.000833
ORF3a224G224CGgtTgt11AY.960.002075
ORF3a224G224CGgtTgt11AY.990.001049
ORF3a224G224CGgtTgt11AY.99.10.001553
ORF3a224G224CGgtTgt11AZ.20.000821
ORF3a224G224CGgtTgt11B.1.1.1340.011364
ORF3a224G224CGgtTgt11B.1.1.1410.002012
ORF3a224G224CGgtTgt11B.1.1.1610.003534
ORF3a224G224CGgtTgt11B.1.1.1940.00495
ORF3a224G224CGgtTgt11B.1.1.2160.00089
ORF3a224G224CGgtTgt11B.1.1.2840.000107
ORF3a224G224CGgtTgt11B.1.1.2940.001266
ORF3a224G224CGgtTgt11B.1.1.2960.018182
ORF3a224G224CGgtTgt11B.1.1.3220.008772
ORF3a224G224CGgtTgt11B.1.1.3980.003226
ORF3a224G224CGgtTgt11B.1.1.4060.006494
ORF3a224G224CGgtTgt11B.1.1.4420.018519
ORF3a224G224CGgtTgt11B.1.1.4620.008621
ORF3a224G224CGgtTgt11B.1.1110.001175
ORF3a224G224CGgtTgt11B.1.130.002375
ORF3a224G224CGgtTgt11B.1.1390.000733
ORF3a224G224CGgtTgt11B.1.1570.002985
ORF3a224G224CGgtTgt11B.1.160.280.002924
ORF3a224G224CGgtTgt11B.1.160.300.002976
ORF3a224G224CGgtTgt11B.1.160.330.004425
ORF3a224G224CGgtTgt11B.1.160.80.001289
ORF3a224G224CGgtTgt11B.1.177.170.000821
ORF3a224G224CGgtTgt11B.1.177.200.001517
ORF3a224G224CGgtTgt11B.1.177.240.001295
ORF3a224G224CGgtTgt11B.1.177.440.000519
ORF3a224G224CGgtTgt11B.1.177.730.000566
ORF3a224G224CGgtTgt11B.1.177.820.000477
ORF3a224G224CGgtTgt11B.1.2060.000816
ORF3a224G224CGgtTgt11B.1.2120.016667
ORF3a224G224CGgtTgt11B.1.2140.003663
ORF3a224G224CGgtTgt11B.1.221.10.002907
ORF3a224G224CGgtTgt11B.1.2390.001221
ORF3a224G224CGgtTgt11B.1.258.110.000396
ORF3a224G224CGgtTgt11B.1.2800.007143
ORF3a224G224CGgtTgt11B.1.351.30.000876
ORF3a224G224CGgtTgt11B.1.36.230.016393
ORF3a224G224CGgtTgt11B.1.3810.007812
ORF3a224G224CGgtTgt11B.1.3950.007042
ORF3a224G224CGgtTgt11B.1.4040.001302
ORF3a224G224CGgtTgt11B.1.4530.003236
ORF3a224G224CGgtTgt11B.1.466.20.000391
ORF3a224G224CGgtTgt11B.1.4970.000315
ORF3a224G224CGgtTgt11B.1.5240.001406
ORF3a224G224CGgtTgt11B.1.5610.000397
ORF3a224G224CGgtTgt11B.1.5640.000426
ORF3a224G224CGgtTgt11B.1.595.40.007299
ORF3a224G224CGgtTgt11B.1.6060.006024
ORF3a224G224CGgtTgt11B.1.619.10.000641
ORF3a224G224CGgtTgt11B.1.6230.000536
ORF3a224G224CGgtTgt11B.1.6330.041667
ORF3a224G224CGgtTgt11B.530.011765
ORF3a224G224CGgtTgt11B.60.00091
ORF3a224G224CGgtTgt11B.6.60.000889
ORF3a224G224CGgtTgt11C.350.000774
ORF3a224G224CGgtTgt11C.37.10.002618
ORF3a224G224CGgtTgt11C.70.034483
ORF3a224G224CGgtTgt11K.10.02381
ORF3a224G224CGgtTgt11P.1.110.010204
ORF3a224G224CGgtTgt11P.1.150.000232
ORF3a224G224CGgtTgt11Q.10.000126
ORF3a224G224CGgtTgt11Q.30.000145
ORF3a224G224CGgtTgt11Q.60.006623

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.