CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = G18G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a18G18GsynggTggA4542390.52643225444-25446
ORF3a18G18GsynggTggC4542100.46255525444-25446
ORF3a18G18GsynggTggG45450.011013225444-25446

Details of the mutation G18G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a18G18GggTggA239454All0.000046
ORF3a18G18GggTggC210454All0.00004
ORF3a18G18GggTggG5454All0.000001
ORF3a18G18GggTggC2128B.1.1.70.000019
ORF3a18G18GggTggA728B.1.1.70.000006
ORF3a18G18GggTggC2527B.1.617.20.000094
ORF3a18G18GggTggA227B.1.617.20.000008
ORF3a18G18GggTggA2526B.1.1770.000329
ORF3a18G18GggTggC126B.1.1770.000013
ORF3a18G18GggTggA2424B.1.1600.000749
ORF3a18G18GggTggC1919AY.250.000114
ORF3a18G18GggTggC1919AY.430.000084
ORF3a18G18GggTggC1717AY.50.000351
ORF3a18G18GggTggA1717B.1.177.440.008822
ORF3a18G18GggTggA1313B.1.1.390.006626
ORF3a18G18GggTggA1111B.1.2210.000781
ORF3a18G18GggTggA1010B.1.160.160.009294
ORF3a18G18GggTggC99AY.290.000142
ORF3a18G18GggTggA79B.10.000064
ORF3a18G18GggTggC29B.10.000018
ORF3a18G18GggTggA99B.1.10.000163
ORF3a18G18GggTggA78B.1.258.170.000728
ORF3a18G18GggTggC18B.1.258.170.000104
ORF3a18G18GggTggC77AY.1020.000186
ORF3a18G18GggTggC77AY.40.000011
ORF3a18G18GggTggC77AY.5.30.002362
ORF3a18G18GggTggA77B.1.177.430.01034
ORF3a18G18GggTggA77B.1.2580.000466
ORF3a18G18GggTggA66B.1.160.200.053571
ORF3a18G18GggTggC55AY.1030.000031
ORF3a18G18GggTggC55AY.390.000124
ORF3a18G18GggTggC55AY.440.00003
ORF3a18G18GggTggA55B.1.160.110.028571
ORF3a18G18GggTggA55B.1.160.120.032051
ORF3a18G18GggTggA55B.1.160.140.010593
ORF3a18G18GggTggA55B.1.160.150.024752
ORF3a18G18GggTggA55B.1.160.320.021459
ORF3a18G18GggTggA55B.1.177.230.016181
ORF3a18G18GggTggC55B.1.4290.000118
ORF3a18G18GggTggC44AY.610.000419
ORF3a18G18GggTggA44B.1.160.290.016878
ORF3a18G18GggTggA44B.1.160.90.028777
ORF3a18G18GggTggA44B.1.36.10.004561
ORF3a18G18GggTggC33AY.29.10.000662
ORF3a18G18GggTggC33AY.30.00003
ORF3a18G18GggTggC33AY.34.10.00153
ORF3a18G18GggTggC33AY.39.10.000119
ORF3a18G18GggTggC33AY.570.001969
ORF3a18G18GggTggC33AY.750.000168
ORF3a18G18GggTggA33B.1.1.5190.000119
ORF3a18G18GggTggA33B.1.160.100.024194
ORF3a18G18GggTggA33B.1.160.300.008929
ORF3a18G18GggTggA220.111111
ORF3a18G18GggTggC22AY.1130.000285
ORF3a18G18GggTggC22AY.1190.000071
ORF3a18G18GggTggA22B.1.1.2770.001517
ORF3a18G18GggTggA22B.1.1.700.000682
ORF3a18G18GggTggA22B.1.1580.047619
ORF3a18G18GggTggA22B.1.160.220.013514
ORF3a18G18GggTggA12B.1.177.810.000189
ORF3a18G18GggTggC12B.1.177.810.000189
ORF3a18G18GggTggC22B.1.36.180.00084
ORF3a18G18GggTggA22B.1.416.10.003125
ORF3a18G18GggTggA22B.1.4690.00722
ORF3a18G18GggTggC22C.350.001548
ORF3a18G18GggTggC12P.1.140.000048
ORF3a18G18GggTggG12P.1.140.000048
ORF3a18G18GggTggC11AD.20.000219
ORF3a18G18GggTggA11AF.10.037037
ORF3a18G18GggTggC11AY.1160.000287
ORF3a18G18GggTggC11AY.1210.000135
ORF3a18G18GggTggC11AY.130.000161
ORF3a18G18GggTggC11AY.260.000028
ORF3a18G18GggTggC11AY.330.000067
ORF3a18G18GggTggC11AY.340.000097
ORF3a18G18GggTggC11AY.4.20.000022
ORF3a18G18GggTggC11AY.460.000104
ORF3a18G18GggTggC11AY.60.000041
ORF3a18G18GggTggC11AY.670.000464
ORF3a18G18GggTggC11AY.870.000833
ORF3a18G18GggTggC11AY.99.20.000092
ORF3a18G18GggTggA11B0.000128
ORF3a18G18GggTggA11B.1.1.2940.001266
ORF3a18G18GggTggC11B.1.1.3170.000412
ORF3a18G18GggTggA11B.1.1.370.000193
ORF3a18G18GggTggA11B.1.1.3730.02381
ORF3a18G18GggTggG11B.1.1.4200.001006
ORF3a18G18GggTggA11B.1.1.4450.037037
ORF3a18G18GggTggA11B.1.1.470.005348
ORF3a18G18GggTggC11B.1.1.4860.001577
ORF3a18G18GggTggA11B.1.1.580.005376
ORF3a18G18GggTggA11B.1.160.260.002421
ORF3a18G18GggTggA11B.1.160.280.002924
ORF3a18G18GggTggA11B.1.160.310.008065
ORF3a18G18GggTggA11B.1.177.210.000076
ORF3a18G18GggTggA11B.1.177.280.007407
ORF3a18G18GggTggA11B.1.177.510.004566
ORF3a18G18GggTggA11B.1.177.530.002392
ORF3a18G18GggTggA11B.1.177.710.010101
ORF3a18G18GggTggA11B.1.177.860.000183
ORF3a18G18GggTggC11B.1.2100.002132
ORF3a18G18GggTggG11B.1.221.30.000833
ORF3a18G18GggTggC11B.1.2340.000132
ORF3a18G18GggTggA11B.1.2360.002053
ORF3a18G18GggTggC11B.1.3510.00003
ORF3a18G18GggTggC11B.1.3540.043478
ORF3a18G18GggTggG11B.1.36.80.001
ORF3a18G18GggTggA11B.1.3670.000792
ORF3a18G18GggTggC11B.1.4990.00105
ORF3a18G18GggTggC11B.1.5330.009615
ORF3a18G18GggTggA11C.160.00106
ORF3a18G18GggTggA11C.36.20.034483
ORF3a18G18GggTggC11C.370.000116
ORF3a18G18GggTggG11D.20.000075
ORF3a18G18GggTggC11P.1.10.000318

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.