CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = G18A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a18G18AnonsyngGtgCt8378350.99761125444-25446
ORF3a18G18AnonsyngGTgCA83720.0023894925444-25446

Details of the mutation G18A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a18G18AgGtgCt835837All0.00016
ORF3a18G18AgGTgCA2837All0
ORF3a18G18AgGtgCt759759AY.1200.028219
ORF3a18G18AgGtgCt99B.1.1.70.000008
ORF3a18G18AgGtgCt99B.1.617.20.000034
ORF3a18G18AgGtgCt88AY.4.20.000174
ORF3a18G18AgGtgCt77AY.230.000488
ORF3a18G18AgGtgCt66AY.1030.000037
ORF3a18G18AgGtgCt55AY.1130.000712
ORF3a18G18AgGTgCA240.111111
ORF3a18G18AgGtgCt240.111111
ORF3a18G18AgGtgCt44AY.120.20.005141
ORF3a18G18AgGtgCt44AY.40.000006
ORF3a18G18AgGtgCt33AY.30.00003
ORF3a18G18AgGtgCt33AY.390.000074
ORF3a18G18AgGtgCt33AY.440.000018
ORF3a18G18AgGtgCt22AY.1020.000053
ORF3a18G18AgGtgCt22AY.1190.000071
ORF3a18G18AgGtgCt22AY.430.000009
ORF3a18G18AgGtgCt11AY.250.000006
ORF3a18G18AgGtgCt11AY.470.000031
ORF3a18G18AgGtgCt11AY.720.001361
ORF3a18G18AgGtgCt11AY.980.000079
ORF3a18G18AgGtgCt11B.10.000009
ORF3a18G18AgGtgCt11B.1.10.000018
ORF3a18G18AgGtgCt11B.1.4270.00005

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.