CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = G174G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a174G174GsynggCggT131990.75572525912-25914
ORF3a174G174GsynggCggA131280.2137425912-25914
ORF3a174G174GsynggCggG13140.030534425912-25914

Details of the mutation G174G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a174G174GggCggT99131All0.000019
ORF3a174G174GggCggA28131All0.000005
ORF3a174G174GggCggG4131All0.000001
ORF3a174G174GggCggT2020AY.60.000823
ORF3a174G174GggCggT1111B.1.1600.000343
ORF3a174G174GggCggT610B.1.1.70.000005
ORF3a174G174GggCggA310B.1.1.70.000003
ORF3a174G174GggCggG110B.1.1.70.000001
ORF3a174G174GggCggT88AY.40.000012
ORF3a174G174GggCggT88AY.440.000049
ORF3a174G174GggCggA88B.1.2340.001056
ORF3a174G174GggCggT66B.1.10.000109
ORF3a174G174GggCggT24AY.250.000012
ORF3a174G174GggCggA14AY.250.000006
ORF3a174G174GggCggG14AY.250.000006
ORF3a174G174GggCggT44AY.420.000161
ORF3a174G174GggCggA44AY.790.004843
ORF3a174G174GggCggT33AY.1030.000019
ORF3a174G174GggCggT33AY.360.000445
ORF3a174G174GggCggT13B.10.000009
ORF3a174G174GggCggG13B.10.000009
ORF3a174G174GggCggA13B.10.000009
ORF3a174G174GggCggA33P.10.000047
ORF3a174G174GggCggT33P.20.00056
ORF3a174G174GggCggT22AY.30.00002
ORF3a174G174GggCggA22B.1.1.5190.000079
ORF3a174G174GggCggT12B.1.617.20.000004
ORF3a174G174GggCggA12B.1.617.20.000004
ORF3a174G174GggCggT11A.50.001923
ORF3a174G174GggCggT11AY.1010.00049
ORF3a174G174GggCggT11AY.190.00114
ORF3a174G174GggCggT11AY.270.000065
ORF3a174G174GggCggT11AY.390.000025
ORF3a174G174GggCggA11AY.39.10.00004
ORF3a174G174GggCggT11AY.4.20.000022
ORF3a174G174GggCggT11AY.430.000004
ORF3a174G174GggCggT11AY.470.000031
ORF3a174G174GggCggT11AY.590.00053
ORF3a174G174GggCggT11AY.740.000116
ORF3a174G174GggCggT11AY.750.000056
ORF3a174G174GggCggT11AY.75.10.00018
ORF3a174G174GggCggT11AY.980.000079
ORF3a174G174GggCggT11AY.98.10.000048
ORF3a174G174GggCggT11AY.99.20.000092
ORF3a174G174GggCggT11B.1.1.3020.002075
ORF3a174G174GggCggT11B.1.1.3980.003226
ORF3a174G174GggCggG11B.1.1.540.003021
ORF3a174G174GggCggA11B.1.1570.002985
ORF3a174G174GggCggT11B.1.177.440.000519
ORF3a174G174GggCggT11B.1.177.650.000665
ORF3a174G174GggCggA11B.1.20.000009
ORF3a174G174GggCggA11B.1.2580.000067
ORF3a174G174GggCggT11B.1.4270.00005
ORF3a174G174GggCggA11B.1.5960.000087
ORF3a174G174GggCggT11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.