CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = F8F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a8F8FsynttCttT56005600125414-25416

Details of the mutation F8F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a8F8FttCttT56005600All0.001071
ORF3a8F8FttCttT12671267AY.40.001972
ORF3a8F8FttCttT974974B.1.1.70.000872
ORF3a8F8FttCttT332332B.1.1.4170.897297
ORF3a8F8FttCttT291291B.1.617.20.001096
ORF3a8F8FttCttT264264P.1.160.098765
ORF3a8F8FttCttT213213AY.1030.001323
ORF3a8F8FttCttT136136B.1.20.001198
ORF3a8F8FttCttT128128P.10.002017
ORF3a8F8FttCttT104104AY.30.001034
ORF3a8F8FttCttT104104AY.440.000633
ORF3a8F8FttCttT100100B.1.5260.00235
ORF3a8F8FttCttT8181AY.430.000359
ORF3a8F8FttCttT8080AY.4.20.001735
ORF3a8F8FttCttT8080R.10.007201
ORF3a8F8FttCttT7676B.1.1770.001001
ORF3a8F8FttCttT7575B.1.1.5190.002978
ORF3a8F8FttCttT6262AY.250.000373
ORF3a8F8FttCttT5959AY.1000.002714
ORF3a8F8FttCttT5858B.10.000531
ORF3a8F8FttCttT5656B.1.10.001016
ORF3a8F8FttCttT3636AY.1200.001338
ORF3a8F8FttCttT3535AY.330.002337
ORF3a8F8FttCttT3333B.1.2340.004354
ORF3a8F8FttCttT3131B.1.5250.003508
ORF3a8F8FttCttT2828AY.420.001126
ORF3a8F8FttCttT2727AY.470.00084
ORF3a8F8FttCttT2626B.1.2430.001809
ORF3a8F8FttCttT2525AY.910.018262
ORF3a8F8FttCttT2424AY.390.000593
ORF3a8F8FttCttT2323AY.39.10.000911
ORF3a8F8FttCttT2323B.1.4290.000541
ORF3a8F8FttCttT2222AY.130.003542
ORF3a8F8FttCttT2020AY.230.001395
ORF3a8F8FttCttT2020AY.940.008853
ORF3a8F8FttCttT1919B.1.177.750.019771
ORF3a8F8FttCttT1919B.1.3510.000565
ORF3a8F8FttCttT1818AY.1020.000477
ORF3a8F8FttCttT1717AY.200.000661
ORF3a8F8FttCttT1616AY.1170.001352
ORF3a8F8FttCttT1616AY.290.000252
ORF3a8F8FttCttT1616AY.360.002371
ORF3a8F8FttCttT1616AY.50.00033
ORF3a8F8FttCttT1515AY.260.000425
ORF3a8F8FttCttT1515B.1.1.3300.9375
ORF3a8F8FttCttT1414AY.400.0135
ORF3a8F8FttCttT1313B.1.6210.001151
ORF3a8F8FttCttT1212B.1.1.2980.010345
ORF3a8F8FttCttT1111AZ.30.016717
ORF3a8F8FttCttT1111B.1.5640.004685
ORF3a8F8FttCttT1010B.1.1.2140.000555
ORF3a8F8FttCttT1010B.1.4270.000505
ORF3a8F8FttCttT1010C.370.001161
ORF3a8F8FttCttT99AY.280.017013
ORF3a8F8FttCttT99AY.99.20.000829
ORF3a8F8FttCttT99B.1.2210.000639
ORF3a8F8FttCttT88AY.1190.000282
ORF3a8F8FttCttT88AY.4.50.00086
ORF3a8F8FttCttT88AY.460.000833
ORF3a8F8FttCttT88AY.610.000838
ORF3a8F8FttCttT88AY.750.000448
ORF3a8F8FttCttT88B0.001022
ORF3a8F8FttCttT77AY.410.002058
ORF3a8F8FttCttT77B.1.4751
ORF3a8F8FttCttT66AY.9.20.00022
ORF3a8F8FttCttT66B.1.1.2880.011494
ORF3a8F8FttCttT66B.1.1600.000187
ORF3a8F8FttCttT66C.360.005464
ORF3a8F8FttCttT55AY.75.10.000902
ORF3a8F8FttCttT55AY.770.005637
ORF3a8F8FttCttT55AY.980.000395
ORF3a8F8FttCttT55AY.98.10.000242
ORF3a8F8FttCttT55B.1.1.4480.010163
ORF3a8F8FttCttT55B.1.177.820.002387
ORF3a8F8FttCttT55B.1.3690.001426
ORF3a8F8FttCttT55C.230.02907
ORF3a8F8FttCttT55Q.20.003067
ORF3a8F8FttCttT44AY.140.000352
ORF3a8F8FttCttT44AY.540.000381
ORF3a8F8FttCttT44AY.60.000165
ORF3a8F8FttCttT44AY.740.000463
ORF3a8F8FttCttT44AY.840.00175
ORF3a8F8FttCttT44AY.90.00027
ORF3a8F8FttCttT44B.1.1.3060.001754
ORF3a8F8FttCttT44B.1.1.3480.003185
ORF3a8F8FttCttT44B.1.177.210.000306
ORF3a8F8FttCttT44B.1.3110.001098
ORF3a8F8FttCttT44B.1.466.20.001565
ORF3a8F8FttCttT44L.30.014184
ORF3a8F8FttCttT44P.1.100.001078
ORF3a8F8FttCttT33A.2.50.001497
ORF3a8F8FttCttT33AD.20.000657
ORF3a8F8FttCttT33AY.1050.001929
ORF3a8F8FttCttT33AY.1070.001398
ORF3a8F8FttCttT33AY.1080.003308
ORF3a8F8FttCttT33AY.116.10.000934
ORF3a8F8FttCttT33AY.1180.000188
ORF3a8F8FttCttT33AY.1210.000406
ORF3a8F8FttCttT33AY.5.30.001012
ORF3a8F8FttCttT33AY.620.001307
ORF3a8F8FttCttT33AY.790.003632
ORF3a8F8FttCttT33B.1.1.1280.021277
ORF3a8F8FttCttT33B.1.1.2220.000612
ORF3a8F8FttCttT33B.1.1.2770.002276
ORF3a8F8FttCttT33B.1.1.2840.000322
ORF3a8F8FttCttT33B.1.1.4410.15
ORF3a8F8FttCttT33B.1.1.4860.004732
ORF3a8F8FttCttT33B.1.1.5230.004687
ORF3a8F8FttCttT33B.1.1.630.001157
ORF3a8F8FttCttT33B.1.4360.003086
ORF3a8F8FttCttT33B.1.5680.003333
ORF3a8F8FttCttT33B.1.5960.000261
ORF3a8F8FttCttT33P.1.120.001452
ORF3a8F8FttCttT33P.1.140.000143
ORF3a8F8FttCttT22A.280.005291
ORF3a8F8FttCttT22AY.1010.000981
ORF3a8F8FttCttT22AY.1130.000285
ORF3a8F8FttCttT22AY.20.000712
ORF3a8F8FttCttT22AY.240.000862
ORF3a8F8FttCttT22AY.270.000129
ORF3a8F8FttCttT22AY.29.10.000441
ORF3a8F8FttCttT22AY.4.2.10.000298
ORF3a8F8FttCttT22AY.46.40.000329
ORF3a8F8FttCttT22AY.46.60.000144
ORF3a8F8FttCttT22AY.80.001212
ORF3a8F8FttCttT22AY.9.10.000167
ORF3a8F8FttCttT22B.1.1.2160.001781
ORF3a8F8FttCttT22B.1.1.280.000622
ORF3a8F8FttCttT22B.1.1.3260.003521
ORF3a8F8FttCttT22B.1.1.330.000842
ORF3a8F8FttCttT22B.1.1.3340.032787
ORF3a8F8FttCttT22B.1.1.340.026316
ORF3a8F8FttCttT22B.1.1.4090.005666
ORF3a8F8FttCttT22B.1.1.4340.000697
ORF3a8F8FttCttT22B.1.1.500.001358
ORF3a8F8FttCttT22B.1.1.700.000682
ORF3a8F8FttCttT22B.1.1570.00597
ORF3a8F8FttCttT22B.1.177.350.001382
ORF3a8F8FttCttT22B.1.177.70.00033
ORF3a8F8FttCttT22B.1.177.810.000379
ORF3a8F8FttCttT22B.1.177.860.000367
ORF3a8F8FttCttT22B.1.2400.000431
ORF3a8F8FttCttT22B.1.360.000292
ORF3a8F8FttCttT22B.1.416.10.003125
ORF3a8F8FttCttT22B.1.810.042553
ORF3a8F8FttCttT22P.1.70.000639
ORF3a8F8FttCttT22P.20.000373
ORF3a8F8FttCttT11A.2.5.20.001572
ORF3a8F8FttCttT11A.210.00277
ORF3a8F8FttCttT11A.290.005319
ORF3a8F8FttCttT11AA.40.009091
ORF3a8F8FttCttT11AD.10.004115
ORF3a8F8FttCttT11AE.80.000489
ORF3a8F8FttCttT11AY.1040.001984
ORF3a8F8FttCttT11AY.1090.00074
ORF3a8F8FttCttT11AY.1110.000183
ORF3a8F8FttCttT11AY.3.10.000085
ORF3a8F8FttCttT11AY.320.000532
ORF3a8F8FttCttT11AY.340.000097
ORF3a8F8FttCttT11AY.370.000316
ORF3a8F8FttCttT11AY.450.000122
ORF3a8F8FttCttT11AY.520.000814
ORF3a8F8FttCttT11AY.550.000917
ORF3a8F8FttCttT11AY.590.00053
ORF3a8F8FttCttT11AY.640.000595
ORF3a8F8FttCttT11AY.650.000533
ORF3a8F8FttCttT11AY.670.000464
ORF3a8F8FttCttT11AY.680.000274
ORF3a8F8FttCttT11AY.70.000196
ORF3a8F8FttCttT11AY.7.10.000113
ORF3a8F8FttCttT11AY.710.000475
ORF3a8F8FttCttT11AY.880.000884
ORF3a8F8FttCttT11AY.900.000684
ORF3a8F8FttCttT11AZ.40.003356
ORF3a8F8FttCttT11B.1.1.1230.017857
ORF3a8F8FttCttT11B.1.1.1740.003378
ORF3a8F8FttCttT11B.1.1.1760.000439
ORF3a8F8FttCttT11B.1.1.2280.003049
ORF3a8F8FttCttT11B.1.1.250.000569
ORF3a8F8FttCttT11B.1.1.2550.00303
ORF3a8F8FttCttT11B.1.1.2630.001558
ORF3a8F8FttCttT11B.1.1.2910.000742
ORF3a8F8FttCttT11B.1.1.3010.001179
ORF3a8F8FttCttT11B.1.1.3110.000358
ORF3a8F8FttCttT11B.1.1.3160.000925
ORF3a8F8FttCttT11B.1.1.3250.025641
ORF3a8F8FttCttT11B.1.1.3760.005952
ORF3a8F8FttCttT11B.1.1.3970.002252
ORF3a8F8FttCttT11B.1.1.4160.000905
ORF3a8F8FttCttT11B.1.1.4190.007407
ORF3a8F8FttCttT11B.1.1.5070.008696
ORF3a8F8FttCttT11B.1.177.310.011494
ORF3a8F8FttCttT11B.1.177.870.000728
ORF3a8F8FttCttT11B.1.221.40.004167
ORF3a8F8FttCttT11B.1.2580.000067
ORF3a8F8FttCttT11B.1.258.230.02381
ORF3a8F8FttCttT11B.1.3240.001605
ORF3a8F8FttCttT11B.1.351.20.000303
ORF3a8F8FttCttT11B.1.351.50.0006
ORF3a8F8FttCttT11B.1.36.350.002604
ORF3a8F8FttCttT11B.1.36.380.001642
ORF3a8F8FttCttT11B.1.3870.04
ORF3a8F8FttCttT11B.1.3970.004854
ORF3a8F8FttCttT11B.1.4130.004255
ORF3a8F8FttCttT11B.1.4710.002732
ORF3a8F8FttCttT11B.1.4800.002488
ORF3a8F8FttCttT11B.1.5440.006024
ORF3a8F8FttCttT11B.1.5490.007194
ORF3a8F8FttCttT11B.1.5510.00129
ORF3a8F8FttCttT11B.1.575.10.002439
ORF3a8F8FttCttT11B.1.5760.000907
ORF3a8F8FttCttT11B.1.5810.009434
ORF3a8F8FttCttT11B.1.5820.000491
ORF3a8F8FttCttT11B.1.6020.006536
ORF3a8F8FttCttT11B.1.617.10.000129
ORF3a8F8FttCttT11B.1.619.10.000641
ORF3a8F8FttCttT11B.1.6230.000536
ORF3a8F8FttCttT11B.1.6370.000073
ORF3a8F8FttCttT11B.1.9.50.005682
ORF3a8F8FttCttT11B.410.008
ORF3a8F8FttCttT11D.20.000075
ORF3a8F8FttCttT11N.10.016949
ORF3a8F8FttCttT11N.40.004255
ORF3a8F8FttCttT11P.1.170.000162
ORF3a8F8FttCttT11P.1.20.001156
ORF3a8F8FttCttT11P.1.60.001946
ORF3a8F8FttCttT11Q.40.000455
ORF3a8F8FttCttT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.