CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = F43del2

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a43F43del2deltTCt--940.44444425519-25521
ORF3a43F43del2delTTc--c930.33333325519-25521
ORF3a43F43del2delTTC--N920.22222225519-25521

Details of the mutation F43del2 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a43F43del2tTCt--49All0.000001
ORF3a43F43del2TTc--c39All0.000001
ORF3a43F43del2TTC--N29All0
ORF3a43F43del2TTC--N23AY.750.000112
ORF3a43F43del2TTc--c13AY.750.000056
ORF3a43F43del2tTCt--12AY.40.000002
ORF3a43F43del2TTc--c12AY.40.000002
ORF3a43F43del2TTc--c11B.1.10.000018
ORF3a43F43del2tTCt--11B.1.1.2790.001121
ORF3a43F43del2tTCt--11B.1.1.70.000001
ORF3a43F43del2tTCt--11D.20.000075