CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = E239G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a239E239GnonsyngAggGg4214200.99762526107-26109
ORF3a239E239GnonsyngAGgGT42110.002375326107-26109

Details of the mutation E239G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a239E239GgAggGg420421All0.00008
ORF3a239E239GgAGgGT1421All0
ORF3a239E239GgAggGg299299B.1.1.2220.060996
ORF3a239E239GgAggGg2222AY.40.000034
ORF3a239E239GgAggGg1212A.10.003382
ORF3a239E239GgAggGg1111B.1.10.0002
ORF3a239E239GgAggGg99B.10.000082
ORF3a239E239GgAggGg99B.1.1.70.000008
ORF3a239E239GgAggGg55AY.440.00003
ORF3a239E239GgAggGg55B.1.1770.000066
ORF3a239E239GgAggGg44AY.390.000099
ORF3a239E239GgAggGg44B.1.1.2740.020202
ORF3a239E239GgAggGg44B.1.1.5190.000159
ORF3a239E239GgAggGg44B.1.5260.000094
ORF3a239E239GgAggGg33B.1.2210.000213
ORF3a239E239GgAggGg33B.1.617.20.000011
ORF3a239E239GgAggGg22AY.230.000139
ORF3a239E239GgAggGg22AY.430.000009
ORF3a239E239GgAggGg22B.1.1.5170.013605
ORF3a239E239GgAggGg22C.370.000232
ORF3a239E239GgAggGg11AY.200.000039
ORF3a239E239GgAGgGT11AY.260.000028
ORF3a239E239GgAggGg11AY.30.00001
ORF3a239E239GgAggGg11AY.4.20.000022
ORF3a239E239GgAggGg11AY.4.40.000409
ORF3a239E239GgAggGg11AY.610.000105
ORF3a239E239GgAggGg11AY.670.000464
ORF3a239E239GgAggGg11B0.000128
ORF3a239E239GgAggGg11B.1.1.2160.00089
ORF3a239E239GgAggGg11B.1.1.280.000311
ORF3a239E239GgAggGg11B.1.1.330.000421
ORF3a239E239GgAggGg11B.1.160.260.002421
ORF3a239E239GgAggGg11B.1.2400.000216
ORF3a239E239GgAggGg11B.1.3510.00003
ORF3a239E239GgAggGg11B.1.438.10.000107
ORF3a239E239GgAggGg11B.1.5750.000303
ORF3a239E239GgAggGg11B.1.6210.000089
ORF3a239E239GgAggGg11P.10.000016
ORF3a239E239GgAggGg11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.