CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = E239E

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a239E239EsyngaGgaA1086810868126107-26109

Details of the mutation E239E within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a239E239EgaGgaA1086810868All0.002079
ORF3a239E239EgaGgaA96389638AY.340.934549
ORF3a239E239EgaGgaA909909AY.34.10.463539
ORF3a239E239EgaGgaA103103B.1.1.70.000092
ORF3a239E239EgaGgaA3838B.1.617.20.000143
ORF3a239E239EgaGgaA2929AY.40.000045
ORF3a239E239EgaGgaA1818AY.360.002668
ORF3a239E239EgaGgaA1515AY.1030.000093
ORF3a239E239EgaGgaA1414B.1.20.000123
ORF3a239E239EgaGgaA88R.10.00072
ORF3a239E239EgaGgaA77AY.1170.000592
ORF3a239E239EgaGgaA77AY.430.000031
ORF3a239E239EgaGgaA66B.1.1770.000079
ORF3a239E239EgaGgaA44AY.420.000161
ORF3a239E239EgaGgaA44AY.9.20.000147
ORF3a239E239EgaGgaA44B.1.4290.000094
ORF3a239E239EgaGgaA33AY.1040.005952
ORF3a239E239EgaGgaA33AY.98.10.000145
ORF3a239E239EgaGgaA33B.10.000027
ORF3a239E239EgaGgaA33B.1.177.80.002257
ORF3a239E239EgaGgaA33B.1.5960.000261
ORF3a239E239EgaGgaA22AY.1130.000285
ORF3a239E239EgaGgaA22AY.1200.000074
ORF3a239E239EgaGgaA22AY.230.000139
ORF3a239E239EgaGgaA22AY.330.000134
ORF3a239E239EgaGgaA22AY.390.000049
ORF3a239E239EgaGgaA22AY.4.50.000215
ORF3a239E239EgaGgaA22AY.440.000012
ORF3a239E239EgaGgaA22AY.450.000243
ORF3a239E239EgaGgaA22AY.50.000041
ORF3a239E239EgaGgaA22AY.920.000575
ORF3a239E239EgaGgaA22B.1.1.4160.00181
ORF3a239E239EgaGgaA22B.1.6370.000146
ORF3a239E239EgaGgaA22P.10.000032
ORF3a239E239EgaGgaA11AY.1020.000027
ORF3a239E239EgaGgaA11AY.1160.000287
ORF3a239E239EgaGgaA11AY.200.000039
ORF3a239E239EgaGgaA11AY.260.000028
ORF3a239E239EgaGgaA11AY.460.000104
ORF3a239E239EgaGgaA11AY.520.000814
ORF3a239E239EgaGgaA11AY.580.000907
ORF3a239E239EgaGgaA11AY.590.00053
ORF3a239E239EgaGgaA11AY.750.000056
ORF3a239E239EgaGgaA11AY.75.10.00018
ORF3a239E239EgaGgaA11AY.960.002075
ORF3a239E239EgaGgaA11B0.000128
ORF3a239E239EgaGgaA11B.1.10.000018
ORF3a239E239EgaGgaA11B.1.1.3160.000925
ORF3a239E239EgaGgaA11B.1.1.5120.028571
ORF3a239E239EgaGgaA11B.1.1.520.012195
ORF3a239E239EgaGgaA11B.1.1600.000031
ORF3a239E239EgaGgaA11B.1.177.650.000665
ORF3a239E239EgaGgaA11B.1.36.260.002857
ORF3a239E239EgaGgaA11B.1.3750.00082
ORF3a239E239EgaGgaA11B.1.5250.000113
ORF3a239E239EgaGgaA11B.230.002924
ORF3a239E239EgaGgaA11B.60.00091

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.