CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = E19E

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a19E19EsyngaAgaG8888125447-25449

Details of the mutation E19E within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a19E19EgaAgaG8888All0.000017
ORF3a19E19EgaAgaG1111AY.250.000066
ORF3a19E19EgaAgaG1111B.10.000101
ORF3a19E19EgaAgaG99B.1.1.70.000008
ORF3a19E19EgaAgaG88B.1.3490.005718
ORF3a19E19EgaAgaG77AY.40.000011
ORF3a19E19EgaAgaG66AY.470.000187
ORF3a19E19EgaAgaG44B.1.10.000073
ORF3a19E19EgaAgaG33B.1.1.2910.002227
ORF3a19E19EgaAgaG33B.1.177.570.000843
ORF3a19E19EgaAgaG22AY.30.00002
ORF3a19E19EgaAgaG22B.1.1.280.000622
ORF3a19E19EgaAgaG22B.1.1.3170.000823
ORF3a19E19EgaAgaG22B.1.177.180.00232
ORF3a19E19EgaAgaG22B.1.2430.000139
ORF3a19E19EgaAgaG22B.1.617.20.000008
ORF3a19E19EgaAgaG11AY.1030.000006
ORF3a19E19EgaAgaG11AY.1060.000335
ORF3a19E19EgaAgaG11AY.130.000161
ORF3a19E19EgaAgaG11AY.160.00038
ORF3a19E19EgaAgaG11AY.260.000028
ORF3a19E19EgaAgaG11AY.4.2.10.000149
ORF3a19E19EgaAgaG11AY.440.000006
ORF3a19E19EgaAgaG11AY.460.000104
ORF3a19E19EgaAgaG11AY.50.000021
ORF3a19E19EgaAgaG11AY.60.000041
ORF3a19E19EgaAgaG11AY.710.000475
ORF3a19E19EgaAgaG11B.1.1.3260.001761
ORF3a19E19EgaAgaG11B.1.1770.000013
ORF3a19E19EgaAgaG11P.10.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.