CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = D27A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a27D27AnonsyngAtgCt228228125471-25473

Details of the mutation D27A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a27D27AgAtgCt228228All0.000044
ORF3a27D27AgAtgCt9696B.1.1.70.000086
ORF3a27D27AgAtgCt2626P.1.10.008259
ORF3a27D27AgAtgCt2121B.1.10.000381
ORF3a27D27AgAtgCt1313B.10.000119
ORF3a27D27AgAtgCt77AY.50.000145
ORF3a27D27AgAtgCt55A0.001935
ORF3a27D27AgAtgCt55AY.30.00005
ORF3a27D27AgAtgCt55AY.430.000022
ORF3a27D27AgAtgCt44AY.40.000006
ORF3a27D27AgAtgCt44B.1.617.20.000015
ORF3a27D27AgAtgCt44B.1.6190.003484
ORF3a27D27AgAtgCt44Q.80.00066
ORF3a27D27AgAtgCt33AY.200.000117
ORF3a27D27AgAtgCt33AY.440.000018
ORF3a27D27AgAtgCt33B.1.1.3360.05
ORF3a27D27AgAtgCt33B.1.1770.00004
ORF3a27D27AgAtgCt22AY.330.000134
ORF3a27D27AgAtgCt22B.1.20.000018
ORF3a27D27AgAtgCt22B.1.360.000292
ORF3a27D27AgAtgCt22P.10.000032
ORF3a27D27AgAtgCt11AY.1000.000046
ORF3a27D27AgAtgCt11AY.1030.000006
ORF3a27D27AgAtgCt11AY.130.000161
ORF3a27D27AgAtgCt11AY.16.10.00047
ORF3a27D27AgAtgCt11AY.70.000196
ORF3a27D27AgAtgCt11AY.770.001127
ORF3a27D27AgAtgCt11B.1.1.2140.000055
ORF3a27D27AgAtgCt11B.1.1.5190.00004
ORF3a27D27AgAtgCt11B.1.177.860.000183
ORF3a27D27AgAtgCt11B.1.5250.000113
ORF3a27D27AgAtgCt11B.1.617.10.000129
ORF3a27D27AgAtgCt11B.1.6180.004032
ORF3a27D27AgAtgCt11C.370.000116
ORF3a27D27AgAtgCt11P.1.60.001946

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.