CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = D22del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a22D22deldelGAT---17351735125456-25458

Details of the mutation D22del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a22D22delGAT---17351735All0.000332
ORF3a22D22delGAT---12711271B.1.214.20.76199
ORF3a22D22delGAT---104104B.1.617.30.310448
ORF3a22D22delGAT---3939B.1.1.70.000035
ORF3a22D22delGAT---2929AY.40.000045
ORF3a22D22delGAT---2525AY.1190.000883
ORF3a22D22delGAT---2424B.1.177.600.005242
ORF3a22D22delGAT---2323B.1.10.000417
ORF3a22D22delGAT---2020B.10.000183
ORF3a22D22delGAT---1717AY.290.000268
ORF3a22D22delGAT---1212B.1.1770.000158
ORF3a22D22delGAT---99B.1.2100.01919
ORF3a22D22delGAT---99B.1.6390.195652
ORF3a22D22delGAT---88B.1.617.20.00003
ORF3a22D22delGAT---77AY.250.000042
ORF3a22D22delGAT---66AY.1030.000037
ORF3a22D22delGAT---66AY.430.000027
ORF3a22D22delGAT---66AY.440.000037
ORF3a22D22delGAT---66B.1.214.10.12
ORF3a22D22delGAT---55AY.46.20.003177
ORF3a22D22delGAT---55B.1.214.30.035714
ORF3a22D22delGAT---55B.1.258.170.00052
ORF3a22D22delGAT---44AY.260.000113
ORF3a22D22delGAT---44AY.4.50.00043
ORF3a22D22delGAT---44B.1.2140.014652
ORF3a22D22delGAT---44B.1.2180.020619
ORF3a22D22delGAT---33AY.1020.00008
ORF3a22D22delGAT---33AY.490.009585
ORF3a22D22delGAT---33AY.50.000062
ORF3a22D22delGAT---33B.1.177.320.004049
ORF3a22D22delGAT---33B.1.6090.001438
ORF3a22D22delGAT---33Q.10.000379
ORF3a22D22delGAT---33U.30.011583
ORF3a22D22delGAT---22AY.30.00002
ORF3a22D22delGAT---22AY.390.000049
ORF3a22D22delGAT---22AY.470.000062
ORF3a22D22delGAT---22AY.540.000191
ORF3a22D22delGAT---22AY.70.000392
ORF3a22D22delGAT---22AY.790.002421
ORF3a22D22delGAT---22B.1.5260.000047
ORF3a22D22delGAT---22P.20.000373
ORF3a22D22delGAT---11A.23.10.000704
ORF3a22D22delGAT---11AY.1050.000643
ORF3a22D22delGAT---11AY.1110.000183
ORF3a22D22delGAT---11AY.1170.000085
ORF3a22D22delGAT---11AY.1200.000037
ORF3a22D22delGAT---11AY.190.00114
ORF3a22D22delGAT---11AY.200.000039
ORF3a22D22delGAT---11AY.230.00007
ORF3a22D22delGAT---11AY.270.000065
ORF3a22D22delGAT---11AY.330.000067
ORF3a22D22delGAT---11AY.39.10.00004
ORF3a22D22delGAT---11AY.60.000041
ORF3a22D22delGAT---11AY.680.000274
ORF3a22D22delGAT---11AY.9.20.000037
ORF3a22D22delGAT---11AY.980.000079
ORF3a22D22delGAT---11AY.990.001049
ORF3a22D22delGAT---11B.1.1.1390.022727
ORF3a22D22delGAT---11B.1.1.2160.00089
ORF3a22D22delGAT---11B.1.1.3110.000358
ORF3a22D22delGAT---11B.1.1.4090.002833
ORF3a22D22delGAT---11B.1.1.4340.000349
ORF3a22D22delGAT---11B.1.1.5280.004808
ORF3a22D22delGAT---11B.1.160.330.004425
ORF3a22D22delGAT---11B.1.177.110.001698
ORF3a22D22delGAT---11B.1.177.190.001431
ORF3a22D22delGAT---11B.1.177.210.000076
ORF3a22D22delGAT---11B.1.177.40.000211
ORF3a22D22delGAT---11B.1.177.60.000977
ORF3a22D22delGAT---11B.1.1790.003759
ORF3a22D22delGAT---11B.1.221.10.002907
ORF3a22D22delGAT---11B.1.2580.000067
ORF3a22D22delGAT---11B.1.258.100.011364
ORF3a22D22delGAT---11B.1.36.170.000494
ORF3a22D22delGAT---11B.1.36.180.00042
ORF3a22D22delGAT---11B.1.36.310.001751
ORF3a22D22delGAT---11B.1.3890.001002
ORF3a22D22delGAT---11B.1.4090.000781
ORF3a22D22delGAT---11B.1.4270.00005
ORF3a22D22delGAT---11B.1.4590.004082
ORF3a22D22delGAT---11B.1.6190.000871
ORF3a22D22delGAT---11B.1.6380.052632
ORF3a22D22delGAT---11B.550.00295
ORF3a22D22delGAT---11C.160.00106
ORF3a22D22delGAT---11P.10.000016
ORF3a22D22delGAT---11P.1.150.000232
ORF3a22D22delGAT---11P.30.001595

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.