CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = D210D

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a210D210DsyngaCgaT77207720126020-26022

Details of the mutation D210D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a210D210DgaCgaT77207720All0.001477
ORF3a210D210DgaCgaT26522652AY.40.004128
ORF3a210D210DgaCgaT13311331B.1.1.70.001192
ORF3a210D210DgaCgaT517517B.1.1.2880.990421
ORF3a210D210DgaCgaT313313AY.250.001883
ORF3a210D210DgaCgaT223223B.1.617.20.00084
ORF3a210D210DgaCgaT210210B.1.1770.002765
ORF3a210D210DgaCgaT165165AY.440.001004
ORF3a210D210DgaCgaT136136B.1.20.001198
ORF3a210D210DgaCgaT124124P.10.001953
ORF3a210D210DgaCgaT114114AY.430.000505
ORF3a210D210DgaCgaT9797AY.30.000965
ORF3a210D210DgaCgaT9696AY.1030.000596
ORF3a210D210DgaCgaT9090B.1.5960.007842
ORF3a210D210DgaCgaT8080B.10.000733
ORF3a210D210DgaCgaT7373AY.1190.002578
ORF3a210D210DgaCgaT7070B.1.258.170.007278
ORF3a210D210DgaCgaT6262B.1.5690.898551
ORF3a210D210DgaCgaT5454B.1.1.3160.049954
ORF3a210D210DgaCgaT5151AY.920.014651
ORF3a210D210DgaCgaT3737C.370.004294
ORF3a210D210DgaCgaT3636AY.50.000743
ORF3a210D210DgaCgaT3535AY.390.000865
ORF3a210D210DgaCgaT3535B.1.10.000635
ORF3a210D210DgaCgaT3434B.1.4090.026562
ORF3a210D210DgaCgaT3030B.1.3510.000892
ORF3a210D210DgaCgaT2929AY.230.002023
ORF3a210D210DgaCgaT2828AY.1000.001288
ORF3a210D210DgaCgaT2828B.1.1600.000873
ORF3a210D210DgaCgaT2727AY.60.00111
ORF3a210D210DgaCgaT2626B.1.2210.001847
ORF3a210D210DgaCgaT2525AY.260.000708
ORF3a210D210DgaCgaT2424AY.470.000747
ORF3a210D210DgaCgaT2020AY.460.002082
ORF3a210D210DgaCgaT2020B.1.1.2140.001109
ORF3a210D210DgaCgaT2020B.1.4270.00101
ORF3a210D210DgaCgaT2020B.1.5650.016207
ORF3a210D210DgaCgaT1919AY.200.000738
ORF3a210D210DgaCgaT1818AY.1180.001128
ORF3a210D210DgaCgaT1818AY.290.000284
ORF3a210D210DgaCgaT1818AY.90.001217
ORF3a210D210DgaCgaT1818C.360.016393
ORF3a210D210DgaCgaT1717AY.610.001781
ORF3a210D210DgaCgaT1717B.1.1.5250.092896
ORF3a210D210DgaCgaT1616B.1.1.390.008155
ORF3a210D210DgaCgaT1616P.20.002986
ORF3a210D210DgaCgaT1515B.1.258.120.11811
ORF3a210D210DgaCgaT1414AY.1060.004689
ORF3a210D210DgaCgaT1212AY.420.000483
ORF3a210D210DgaCgaT1212AY.46.60.000866
ORF3a210D210DgaCgaT1111AY.1020.000292
ORF3a210D210DgaCgaT1111AY.750.000616
ORF3a210D210DgaCgaT1111AY.9.10.000921
ORF3a210D210DgaCgaT1111B.1.2580.000732
ORF3a210D210DgaCgaT1010B.1.1.1890.015129
ORF3a210D210DgaCgaT1010B.1.2100.021322
ORF3a210D210DgaCgaT1010B.1.360.001459
ORF3a210D210DgaCgaT99AY.4.20.000195
ORF3a210D210DgaCgaT99AY.450.001095
ORF3a210D210DgaCgaT99B.1.1.2220.001836
ORF3a210D210DgaCgaT99B.1.110.30.006466
ORF3a210D210DgaCgaT99B.1.5260.000212
ORF3a210D210DgaCgaT99P.1.10.002859
ORF3a210D210DgaCgaT88AY.1200.000297
ORF3a210D210DgaCgaT88AY.320.00426
ORF3a210D210DgaCgaT88AY.330.000534
ORF3a210D210DgaCgaT88AY.690.001493
ORF3a210D210DgaCgaT88B.1.1.260.041885
ORF3a210D210DgaCgaT88B.1.160.80.010309
ORF3a210D210DgaCgaT88Q.10.001011
ORF3a210D210DgaCgaT77AY.1210.000947
ORF3a210D210DgaCgaT77AY.3.10.000597
ORF3a210D210DgaCgaT77AY.46.30.006536
ORF3a210D210DgaCgaT77AY.75.10.001262
ORF3a210D210DgaCgaT77B.1.1.3030.019337
ORF3a210D210DgaCgaT77B.1.2430.000487
ORF3a210D210DgaCgaT77P.1.140.000335
ORF3a210D210DgaCgaT66AY.270.000388
ORF3a210D210DgaCgaT66AY.340.000582
ORF3a210D210DgaCgaT66AY.980.000474
ORF3a210D210DgaCgaT66B0.000767
ORF3a210D210DgaCgaT66B.1.177.120.00091
ORF3a210D210DgaCgaT66B.1.177.180.006961
ORF3a210D210DgaCgaT66B.1.5250.000679
ORF3a210D210DgaCgaT66P.1.150.001394
ORF3a210D210DgaCgaT55AY.1160.001434
ORF3a210D210DgaCgaT55AY.540.000477
ORF3a210D210DgaCgaT55AY.650.002665
ORF3a210D210DgaCgaT55AY.9.20.000184
ORF3a210D210DgaCgaT55AY.98.10.000242
ORF3a210D210DgaCgaT55AY.99.20.000461
ORF3a210D210DgaCgaT55B.1.1.280.001556
ORF3a210D210DgaCgaT55B.1.3960.003529
ORF3a210D210DgaCgaT55B.1.4290.000118
ORF3a210D210DgaCgaT55B.1.5950.001305
ORF3a210D210DgaCgaT55C.36.30.002836
ORF3a210D210DgaCgaT44AY.1010.001962
ORF3a210D210DgaCgaT44AY.930.001092
ORF3a210D210DgaCgaT44B.1.1.2340.048193
ORF3a210D210DgaCgaT44B.1.1.3290.015385
ORF3a210D210DgaCgaT44B.1.177.750.004162
ORF3a210D210DgaCgaT44B.1.177.810.000757
ORF3a210D210DgaCgaT44B.1.438.10.000429
ORF3a210D210DgaCgaT44B.1.5770.002749
ORF3a210D210DgaCgaT44B.1.617.10.000516
ORF3a210D210DgaCgaT44B.1.6210.000354
ORF3a210D210DgaCgaT33AY.100.00159
ORF3a210D210DgaCgaT33AY.130.000483
ORF3a210D210DgaCgaT33AY.160.001139
ORF3a210D210DgaCgaT33AY.16.10.00141
ORF3a210D210DgaCgaT33AY.4.50.000322
ORF3a210D210DgaCgaT33AY.850.001282
ORF3a210D210DgaCgaT33B.1.1.1150.026786
ORF3a210D210DgaCgaT33B.1.1.5190.000119
ORF3a210D210DgaCgaT33B.1.177.440.001557
ORF3a210D210DgaCgaT33B.1.177.600.000655
ORF3a210D210DgaCgaT33B.1.177.80.002257
ORF3a210D210DgaCgaT33B.1.2060.002447
ORF3a210D210DgaCgaT33B.1.258.140.002941
ORF3a210D210DgaCgaT33B.1.36.180.001261
ORF3a210D210DgaCgaT33B.1.3690.000856
ORF3a210D210DgaCgaT33B.1.466.20.001174
ORF3a210D210DgaCgaT33B.1.5090.002597
ORF3a210D210DgaCgaT33B.1.5710.029126
ORF3a210D210DgaCgaT33B.1.5750.00091
ORF3a210D210DgaCgaT33D.20.000225
ORF3a210D210DgaCgaT33R.10.00027
ORF3a210D210DgaCgaT220.111111
ORF3a210D210DgaCgaT22A.290.010638
ORF3a210D210DgaCgaT22AY.1170.000169
ORF3a210D210DgaCgaT22AY.710.00095
ORF3a210D210DgaCgaT22AY.730.001331
ORF3a210D210DgaCgaT22B.1.1.250.001137
ORF3a210D210DgaCgaT22B.1.1.2770.001517
ORF3a210D210DgaCgaT22B.1.1.3180.000604
ORF3a210D210DgaCgaT22B.1.1.4340.000697
ORF3a210D210DgaCgaT22B.1.1260.002551
ORF3a210D210DgaCgaT22B.1.1570.00597
ORF3a210D210DgaCgaT22B.1.177.570.000562
ORF3a210D210DgaCgaT22B.1.177.860.000367
ORF3a210D210DgaCgaT22B.1.2340.000264
ORF3a210D210DgaCgaT22B.1.36.310.003503
ORF3a210D210DgaCgaT22B.1.36.80.002
ORF3a210D210DgaCgaT22B.1.3780.013699
ORF3a210D210DgaCgaT22B.1.5880.00182
ORF3a210D210DgaCgaT22B.6.60.001778
ORF3a210D210DgaCgaT22C.350.001548
ORF3a210D210DgaCgaT22N.50.003534
ORF3a210D210DgaCgaT22P.1.170.000324
ORF3a210D210DgaCgaT22Q.80.00033
ORF3a210D210DgaCgaT11A.10.000282
ORF3a210D210DgaCgaT11A.2.30.004739
ORF3a210D210DgaCgaT11A.2.50.000499
ORF3a210D210DgaCgaT11A.210.00277
ORF3a210D210DgaCgaT11A.220.066667
ORF3a210D210DgaCgaT11A.230.010526
ORF3a210D210DgaCgaT11AA.20.007692
ORF3a210D210DgaCgaT11AD.20.000219
ORF3a210D210DgaCgaT11AY.1100.000113
ORF3a210D210DgaCgaT11AY.1110.000183
ORF3a210D210DgaCgaT11AY.1140.000231
ORF3a210D210DgaCgaT11AY.116.10.000311
ORF3a210D210DgaCgaT11AY.23.10.000417
ORF3a210D210DgaCgaT11AY.39.10.00004
ORF3a210D210DgaCgaT11AY.4.10.000737
ORF3a210D210DgaCgaT11AY.410.000294
ORF3a210D210DgaCgaT11AY.5.40.000277
ORF3a210D210DgaCgaT11AY.550.000917
ORF3a210D210DgaCgaT11AY.680.000274
ORF3a210D210DgaCgaT11AY.70.000196
ORF3a210D210DgaCgaT11AY.7.10.000113
ORF3a210D210DgaCgaT11AY.91.10.004065
ORF3a210D210DgaCgaT11AY.99.10.001553
ORF3a210D210DgaCgaT11B.1.1.1610.003534
ORF3a210D210DgaCgaT11B.1.1.1700.001247
ORF3a210D210DgaCgaT11B.1.1.2010.02439
ORF3a210D210DgaCgaT11B.1.1.2210.010101
ORF3a210D210DgaCgaT11B.1.1.2610.008621
ORF3a210D210DgaCgaT11B.1.1.2740.005051
ORF3a210D210DgaCgaT11B.1.1.2840.000107
ORF3a210D210DgaCgaT11B.1.1.3040.002809
ORF3a210D210DgaCgaT11B.1.1.3050.003861
ORF3a210D210DgaCgaT11B.1.1.3170.000412
ORF3a210D210DgaCgaT11B.1.1.330.000421
ORF3a210D210DgaCgaT11B.1.1.3360.016667
ORF3a210D210DgaCgaT11B.1.1.3400.045455
ORF3a210D210DgaCgaT11B.1.1.3660.015873
ORF3a210D210DgaCgaT11B.1.1.3690.000446
ORF3a210D210DgaCgaT11B.1.1.3970.002252
ORF3a210D210DgaCgaT11B.1.1.4080.027778
ORF3a210D210DgaCgaT11B.1.1.4160.000905
ORF3a210D210DgaCgaT11B.1.1.4190.007407
ORF3a210D210DgaCgaT11B.1.1.4480.002033
ORF3a210D210DgaCgaT11B.1.1.510.001718
ORF3a210D210DgaCgaT11B.1.1.520.012195
ORF3a210D210DgaCgaT11B.1.1.5260.003546
ORF3a210D210DgaCgaT11B.1.1.5280.004808
ORF3a210D210DgaCgaT11B.1.1080.005814
ORF3a210D210DgaCgaT11B.1.130.002375
ORF3a210D210DgaCgaT11B.1.160.70.002079
ORF3a210D210DgaCgaT11B.1.177.300.002513
ORF3a210D210DgaCgaT11B.1.177.450.000381
ORF3a210D210DgaCgaT11B.1.177.510.004566
ORF3a210D210DgaCgaT11B.1.177.580.001332
ORF3a210D210DgaCgaT11B.1.177.70.000165
ORF3a210D210DgaCgaT11B.1.177.730.000566
ORF3a210D210DgaCgaT11B.1.1950.005025
ORF3a210D210DgaCgaT11B.1.2140.003663
ORF3a210D210DgaCgaT11B.1.214.30.007143
ORF3a210D210DgaCgaT11B.1.2320.000537
ORF3a210D210DgaCgaT11B.1.2400.000216
ORF3a210D210DgaCgaT11B.1.2980.002114
ORF3a210D210DgaCgaT11B.1.3110.000275
ORF3a210D210DgaCgaT11B.1.3360.002439
ORF3a210D210DgaCgaT11B.1.36.160.001425
ORF3a210D210DgaCgaT11B.1.36.170.000494
ORF3a210D210DgaCgaT11B.1.36.240.006173
ORF3a210D210DgaCgaT11B.1.36.290.000517
ORF3a210D210DgaCgaT11B.1.36.380.001642
ORF3a210D210DgaCgaT11B.1.362.20.004717
ORF3a210D210DgaCgaT11B.1.3670.000792
ORF3a210D210DgaCgaT11B.1.4040.001302
ORF3a210D210DgaCgaT11B.1.4260.001009
ORF3a210D210DgaCgaT11B.1.4280.00102
ORF3a210D210DgaCgaT11B.1.4520.013699
ORF3a210D210DgaCgaT11B.1.4590.004082
ORF3a210D210DgaCgaT11B.1.4990.00105
ORF3a210D210DgaCgaT11B.1.5170.000427
ORF3a210D210DgaCgaT11B.1.5600.00463
ORF3a210D210DgaCgaT11B.1.5640.000426
ORF3a210D210DgaCgaT11B.1.5680.001111
ORF3a210D210DgaCgaT11B.1.5780.017857
ORF3a210D210DgaCgaT11B.1.5800.004065
ORF3a210D210DgaCgaT11B.1.6050.005952
ORF3a210D210DgaCgaT11B.1.6200.000946
ORF3a210D210DgaCgaT11B.1.621.10.000506
ORF3a210D210DgaCgaT11B.1.6290.013333
ORF3a210D210DgaCgaT11B.1.6360.006711
ORF3a210D210DgaCgaT11C.2.10.006667
ORF3a210D210DgaCgaT11C.260.007353
ORF3a210D210DgaCgaT11N.90.005952
ORF3a210D210DgaCgaT11P.1.120.000484
ORF3a210D210DgaCgaT11P.1.20.001156

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.