CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = D173V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a173D173VnonsyngAtgTt762762125909-25911

Details of the mutation D173V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a173D173VgAtgTt762762All0.000146
ORF3a173D173VgAtgTt374374B.1.1.70.000335
ORF3a173D173VgAtgTt303303B.1.20.002668
ORF3a173D173VgAtgTt1010AY.40.000016
ORF3a173D173VgAtgTt99B.1.10.000163
ORF3a173D173VgAtgTt88B.10.000073
ORF3a173D173VgAtgTt88B.1.2340.001056
ORF3a173D173VgAtgTt77P.1.170.001132
ORF3a173D173VgAtgTt66AY.430.000027
ORF3a173D173VgAtgTt44AY.440.000024
ORF3a173D173VgAtgTt33B.1.2430.000209
ORF3a173D173VgAtgTt33P.10.000047
ORF3a173D173VgAtgTt22AY.330.000134
ORF3a173D173VgAtgTt22AY.470.000062
ORF3a173D173VgAtgTt22B.1.1.2940.002532
ORF3a173D173VgAtgTt22B.1.1770.000026
ORF3a173D173VgAtgTt22B.1.5820.000981
ORF3a173D173VgAtgTt22B.1.5960.000174
ORF3a173D173VgAtgTt22B.1.617.20.000008
ORF3a173D173VgAtgTt22P.1.150.000465
ORF3a173D173VgAtgTt11AY.1030.000006
ORF3a173D173VgAtgTt11AY.230.00007
ORF3a173D173VgAtgTt11AY.30.00001
ORF3a173D173VgAtgTt11AY.390.000025
ORF3a173D173VgAtgTt11AY.460.000104
ORF3a173D173VgAtgTt11AY.820.001357
ORF3a173D173VgAtgTt11B.1.1.1940.00495
ORF3a173D173VgAtgTt11B.1.1.3180.000302
ORF3a173D173VgAtgTt11B.1.351.20.000303
ORF3a173D173VgAtgTt11D.20.000075
ORF3a173D173VgAtgTt11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.