CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = D173N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a173D173NnonsynGatAat447447125909-25911

Details of the mutation D173N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a173D173NGatAat447447All0.000085
ORF3a173D173NGatAat172172AY.40.000268
ORF3a173D173NGatAat9494B.1.1.70.000084
ORF3a173D173NGatAat5656B.1.617.20.000211
ORF3a173D173NGatAat1616AY.390.000395
ORF3a173D173NGatAat1515AY.1060.005023
ORF3a173D173NGatAat1212B.1.1.5190.000477
ORF3a173D173NGatAat1111B.1.1.3060.004822
ORF3a173D173NGatAat1111B.1.177.600.002403
ORF3a173D173NGatAat66AY.290.000095
ORF3a173D173NGatAat66AY.360.000889
ORF3a173D173NGatAat66B.1.1.2160.005343
ORF3a173D173NGatAat66B.1.20.000053
ORF3a173D173NGatAat44AY.440.000024
ORF3a173D173NGatAat33B.1.621.10.001517
ORF3a173D173NGatAat22AY.1030.000012
ORF3a173D173NGatAat22AY.1190.000071
ORF3a173D173NGatAat22AY.520.001629
ORF3a173D173NGatAat22B.10.000018
ORF3a173D173NGatAat22B.1.10.000036
ORF3a173D173NGatAat22B.1.5380.016129
ORF3a173D173NGatAat22B.1.5750.000607
ORF3a173D173NGatAat11AY.230.00007
ORF3a173D173NGatAat11AY.240.000431
ORF3a173D173NGatAat11AY.250.000006
ORF3a173D173NGatAat11AY.29.10.000221
ORF3a173D173NGatAat11AY.4.2.10.000149
ORF3a173D173NGatAat11AY.430.000004
ORF3a173D173NGatAat11B0.000128
ORF3a173D173NGatAat11B.1.1.2200.001859
ORF3a173D173NGatAat11B.1.1.3120.001912
ORF3a173D173NGatAat11B.1.1.4660.008696
ORF3a173D173NGatAat11B.1.3510.00003
ORF3a173D173NGatAat11B.1.4270.00005
ORF3a173D173NGatAat11B.610.005747
ORF3a173D173NGatAat11P.10.000016
ORF3a173D173NGatAat11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.