CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 148 | C148C | syn | tgC | tgT | 2476 | 2476 | 1 | 25834-25836 |
Details of the mutation C148C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 148 | C148C | tgC | tgT | 2476 | 2476 | All | 0.000474 |
ORF3a | 148 | C148C | tgC | tgT | 564 | 564 | AY.47 | 0.017543 |
ORF3a | 148 | C148C | tgC | tgT | 381 | 381 | B.1.1.7 | 0.000341 |
ORF3a | 148 | C148C | tgC | tgT | 227 | 227 | AY.43 | 0.001006 |
ORF3a | 148 | C148C | tgC | tgT | 163 | 163 | AY.44 | 0.000992 |
ORF3a | 148 | C148C | tgC | tgT | 115 | 115 | B.1.617.2 | 0.000433 |
ORF3a | 148 | C148C | tgC | tgT | 110 | 110 | AY.4 | 0.000171 |
ORF3a | 148 | C148C | tgC | tgT | 66 | 66 | AY.25 | 0.000397 |
ORF3a | 148 | C148C | tgC | tgT | 60 | 60 | B.1.177.59 | 0.967742 |
ORF3a | 148 | C148C | tgC | tgT | 51 | 51 | P.1.10 | 0.013743 |
ORF3a | 148 | C148C | tgC | tgT | 49 | 49 | AY.103 | 0.000304 |
ORF3a | 148 | C148C | tgC | tgT | 46 | 46 | AY.98.1 | 0.002228 |
ORF3a | 148 | C148C | tgC | tgT | 41 | 41 | B.1 | 0.000376 |
ORF3a | 148 | C148C | tgC | tgT | 35 | 35 | AY.39 | 0.000865 |
ORF3a | 148 | C148C | tgC | tgT | 33 | 33 | B.1.2 | 0.000291 |
ORF3a | 148 | C148C | tgC | tgT | 31 | 31 | B.1.427 | 0.001565 |
ORF3a | 148 | C148C | tgC | tgT | 21 | 21 | AY.53 | 0.006038 |
ORF3a | 148 | C148C | tgC | tgT | 18 | 18 | B.1.351 | 0.000535 |
ORF3a | 148 | C148C | tgC | tgT | 17 | 17 | B.1.1 | 0.000308 |
ORF3a | 148 | C148C | tgC | tgT | 17 | 17 | B.1.177 | 0.000224 |
ORF3a | 148 | C148C | tgC | tgT | 15 | 15 | B.1.351.2 | 0.004539 |
ORF3a | 148 | C148C | tgC | tgT | 13 | 13 | AY.20 | 0.000505 |
ORF3a | 148 | C148C | tgC | tgT | 13 | 13 | B.1.525 | 0.001471 |
ORF3a | 148 | C148C | tgC | tgT | 12 | 12 | AY.119 | 0.000424 |
ORF3a | 148 | C148C | tgC | tgT | 12 | 12 | P.1 | 0.000189 |
ORF3a | 148 | C148C | tgC | tgT | 11 | 11 | AY.2 | 0.003917 |
ORF3a | 148 | C148C | tgC | tgT | 11 | 11 | B.1.621 | 0.000974 |
ORF3a | 148 | C148C | tgC | tgT | 10 | 10 | B.1.36.18 | 0.004202 |
ORF3a | 148 | C148C | tgC | tgT | 9 | 9 | AY.102 | 0.000239 |
ORF3a | 148 | C148C | tgC | tgT | 9 | 9 | B.1.429 | 0.000212 |
ORF3a | 148 | C148C | tgC | tgT | 8 | 8 | AY.16 | 0.003037 |
ORF3a | 148 | C148C | tgC | tgT | 8 | 8 | AY.39.1 | 0.000317 |
ORF3a | 148 | C148C | tgC | tgT | 7 | 7 | AY.120 | 0.00026 |
ORF3a | 148 | C148C | tgC | tgT | 7 | 7 | AY.3 | 0.00007 |
ORF3a | 148 | C148C | tgC | tgT | 7 | 7 | B.1.1.446 | 0.538462 |
ORF3a | 148 | C148C | tgC | tgT | 7 | 7 | D.2 | 0.000525 |
ORF3a | 148 | C148C | tgC | tgT | 6 | 6 | A.2.5.2 | 0.009434 |
ORF3a | 148 | C148C | tgC | tgT | 6 | 6 | AY.26 | 0.00017 |
ORF3a | 148 | C148C | tgC | tgT | 6 | 6 | AY.75 | 0.000336 |
ORF3a | 148 | C148C | tgC | tgT | 6 | 6 | AY.93 | 0.001638 |
ORF3a | 148 | C148C | tgC | tgT | 6 | 6 | B.1.1.216 | 0.005343 |
ORF3a | 148 | C148C | tgC | tgT | 6 | 6 | B.1.1.306 | 0.00263 |
ORF3a | 148 | C148C | tgC | tgT | 5 | 5 | AY.100 | 0.00023 |
ORF3a | 148 | C148C | tgC | tgT | 5 | 5 | AY.6 | 0.000206 |
ORF3a | 148 | C148C | tgC | tgT | 5 | 5 | B.1.1.1 | 0.001633 |
ORF3a | 148 | C148C | tgC | tgT | 5 | 5 | B.1.1.519 | 0.000199 |
ORF3a | 148 | C148C | tgC | tgT | 5 | 5 | B.1.177.32 | 0.006748 |
ORF3a | 148 | C148C | tgC | tgT | 5 | 5 | B.1.232 | 0.002687 |
ORF3a | 148 | C148C | tgC | tgT | 5 | 5 | B.1.241 | 0.004058 |
ORF3a | 148 | C148C | tgC | tgT | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF3a | 148 | C148C | tgC | tgT | 4 | 4 | AY.5 | 0.000083 |
ORF3a | 148 | C148C | tgC | tgT | 4 | 4 | AY.99.2 | 0.000369 |
ORF3a | 148 | C148C | tgC | tgT | 4 | 4 | B.1.177.21 | 0.000306 |
ORF3a | 148 | C148C | tgC | tgT | 4 | 4 | B.1.258.17 | 0.000416 |
ORF3a | 148 | C148C | tgC | tgT | 4 | 4 | B.1.36 | 0.000584 |
ORF3a | 148 | C148C | tgC | tgT | 4 | 4 | C.16 | 0.004242 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | AY.109 | 0.002219 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | AY.27 | 0.000194 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | AY.29 | 0.000047 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | AY.34 | 0.000291 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | AY.4.2 | 0.000065 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | AY.61 | 0.000314 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | B.1.1.214 | 0.000166 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | B.1.1.401 | 0.2 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | B.1.160 | 0.000094 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | B.1.160.30 | 0.008929 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | B.1.239 | 0.003663 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | B.1.311 | 0.000824 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | B.1.466.2 | 0.001174 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | B.1.526 | 0.000071 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | B.1.549 | 0.021583 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | A | 0.000774 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AD.2 | 0.000438 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.118 | 0.000125 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.23 | 0.000139 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.33 | 0.000134 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.46 | 0.000208 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.5.3 | 0.000675 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.54 | 0.000191 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.59 | 0.001059 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.67 | 0.000929 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.86 | 0.00166 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.88 | 0.001768 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | B.1.161 | 0.034483 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | B.1.258.14 | 0.001961 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | B.1.36.35 | 0.005208 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | B.40 | 0.000729 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | C.36 | 0.001821 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | C.36.3.1 | 0.005435 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | Q.1 | 0.000253 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | A.23.1 | 0.000704 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.10 | 0.00053 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.11 | 0.001339 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.19 | 0.00114 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.71 | 0.000475 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.78 | 0.001541 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.79 | 0.001211 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.85 | 0.000427 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.87 | 0.000833 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B | 0.000128 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.1.315 | 0.008475 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.1.483 | 0.038462 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.177.50 | 0.004695 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.177.72 | 0.00339 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.210 | 0.002132 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.225 | 0.015385 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.260 | 0.003344 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.343 | 0.020833 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.391 | 0.001127 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.416 | 0.001269 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.503 | 0.002488 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.547 | 0.02439 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.575 | 0.000303 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.623 | 0.000536 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.33 | 0.021277 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.61 | 0.005747 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | C.23 | 0.005814 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | C.37 | 0.000116 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | P.3 | 0.001595 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | Q.4 | 0.000455 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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