CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = C148C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a148C148CsyntgCtgT24762476125834-25836

Details of the mutation C148C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a148C148CtgCtgT24762476All0.000474
ORF3a148C148CtgCtgT564564AY.470.017543
ORF3a148C148CtgCtgT381381B.1.1.70.000341
ORF3a148C148CtgCtgT227227AY.430.001006
ORF3a148C148CtgCtgT163163AY.440.000992
ORF3a148C148CtgCtgT115115B.1.617.20.000433
ORF3a148C148CtgCtgT110110AY.40.000171
ORF3a148C148CtgCtgT6666AY.250.000397
ORF3a148C148CtgCtgT6060B.1.177.590.967742
ORF3a148C148CtgCtgT5151P.1.100.013743
ORF3a148C148CtgCtgT4949AY.1030.000304
ORF3a148C148CtgCtgT4646AY.98.10.002228
ORF3a148C148CtgCtgT4141B.10.000376
ORF3a148C148CtgCtgT3535AY.390.000865
ORF3a148C148CtgCtgT3333B.1.20.000291
ORF3a148C148CtgCtgT3131B.1.4270.001565
ORF3a148C148CtgCtgT2121AY.530.006038
ORF3a148C148CtgCtgT1818B.1.3510.000535
ORF3a148C148CtgCtgT1717B.1.10.000308
ORF3a148C148CtgCtgT1717B.1.1770.000224
ORF3a148C148CtgCtgT1515B.1.351.20.004539
ORF3a148C148CtgCtgT1313AY.200.000505
ORF3a148C148CtgCtgT1313B.1.5250.001471
ORF3a148C148CtgCtgT1212AY.1190.000424
ORF3a148C148CtgCtgT1212P.10.000189
ORF3a148C148CtgCtgT1111AY.20.003917
ORF3a148C148CtgCtgT1111B.1.6210.000974
ORF3a148C148CtgCtgT1010B.1.36.180.004202
ORF3a148C148CtgCtgT99AY.1020.000239
ORF3a148C148CtgCtgT99B.1.4290.000212
ORF3a148C148CtgCtgT88AY.160.003037
ORF3a148C148CtgCtgT88AY.39.10.000317
ORF3a148C148CtgCtgT77AY.1200.00026
ORF3a148C148CtgCtgT77AY.30.00007
ORF3a148C148CtgCtgT77B.1.1.4460.538462
ORF3a148C148CtgCtgT77D.20.000525
ORF3a148C148CtgCtgT66A.2.5.20.009434
ORF3a148C148CtgCtgT66AY.260.00017
ORF3a148C148CtgCtgT66AY.750.000336
ORF3a148C148CtgCtgT66AY.930.001638
ORF3a148C148CtgCtgT66B.1.1.2160.005343
ORF3a148C148CtgCtgT66B.1.1.3060.00263
ORF3a148C148CtgCtgT55AY.1000.00023
ORF3a148C148CtgCtgT55AY.60.000206
ORF3a148C148CtgCtgT55B.1.1.10.001633
ORF3a148C148CtgCtgT55B.1.1.5190.000199
ORF3a148C148CtgCtgT55B.1.177.320.006748
ORF3a148C148CtgCtgT55B.1.2320.002687
ORF3a148C148CtgCtgT55B.1.2410.004058
ORF3a148C148CtgCtgT44AY.4.2.10.000596
ORF3a148C148CtgCtgT44AY.50.000083
ORF3a148C148CtgCtgT44AY.99.20.000369
ORF3a148C148CtgCtgT44B.1.177.210.000306
ORF3a148C148CtgCtgT44B.1.258.170.000416
ORF3a148C148CtgCtgT44B.1.360.000584
ORF3a148C148CtgCtgT44C.160.004242
ORF3a148C148CtgCtgT33AY.1090.002219
ORF3a148C148CtgCtgT33AY.270.000194
ORF3a148C148CtgCtgT33AY.290.000047
ORF3a148C148CtgCtgT33AY.340.000291
ORF3a148C148CtgCtgT33AY.4.20.000065
ORF3a148C148CtgCtgT33AY.610.000314
ORF3a148C148CtgCtgT33B.1.1.2140.000166
ORF3a148C148CtgCtgT33B.1.1.4010.2
ORF3a148C148CtgCtgT33B.1.1600.000094
ORF3a148C148CtgCtgT33B.1.160.300.008929
ORF3a148C148CtgCtgT33B.1.2390.003663
ORF3a148C148CtgCtgT33B.1.3110.000824
ORF3a148C148CtgCtgT33B.1.466.20.001174
ORF3a148C148CtgCtgT33B.1.5260.000071
ORF3a148C148CtgCtgT33B.1.5490.021583
ORF3a148C148CtgCtgT33B.1.617.10.000387
ORF3a148C148CtgCtgT22A0.000774
ORF3a148C148CtgCtgT22AD.20.000438
ORF3a148C148CtgCtgT22AY.1180.000125
ORF3a148C148CtgCtgT22AY.230.000139
ORF3a148C148CtgCtgT22AY.330.000134
ORF3a148C148CtgCtgT22AY.4.50.000215
ORF3a148C148CtgCtgT22AY.460.000208
ORF3a148C148CtgCtgT22AY.5.30.000675
ORF3a148C148CtgCtgT22AY.540.000191
ORF3a148C148CtgCtgT22AY.590.001059
ORF3a148C148CtgCtgT22AY.670.000929
ORF3a148C148CtgCtgT22AY.75.10.000361
ORF3a148C148CtgCtgT22AY.860.00166
ORF3a148C148CtgCtgT22AY.880.001768
ORF3a148C148CtgCtgT22AY.9.20.000073
ORF3a148C148CtgCtgT22B.1.1.2220.000408
ORF3a148C148CtgCtgT22B.1.1.390.001019
ORF3a148C148CtgCtgT22B.1.1610.034483
ORF3a148C148CtgCtgT22B.1.258.140.001961
ORF3a148C148CtgCtgT22B.1.36.290.001035
ORF3a148C148CtgCtgT22B.1.36.350.005208
ORF3a148C148CtgCtgT22B.1.5960.000174
ORF3a148C148CtgCtgT22B.400.000729
ORF3a148C148CtgCtgT22C.360.001821
ORF3a148C148CtgCtgT22C.36.3.10.005435
ORF3a148C148CtgCtgT22Q.10.000253
ORF3a148C148CtgCtgT11A.2.50.000499
ORF3a148C148CtgCtgT11A.23.10.000704
ORF3a148C148CtgCtgT11AY.100.00053
ORF3a148C148CtgCtgT11AY.1060.000335
ORF3a148C148CtgCtgT11AY.1080.001103
ORF3a148C148CtgCtgT11AY.110.001339
ORF3a148C148CtgCtgT11AY.1100.000113
ORF3a148C148CtgCtgT11AY.1130.000142
ORF3a148C148CtgCtgT11AY.1160.000287
ORF3a148C148CtgCtgT11AY.1170.000085
ORF3a148C148CtgCtgT11AY.120.000316
ORF3a148C148CtgCtgT11AY.120.2.10.000498
ORF3a148C148CtgCtgT11AY.1210.000135
ORF3a148C148CtgCtgT11AY.140.000088
ORF3a148C148CtgCtgT11AY.190.00114
ORF3a148C148CtgCtgT11AY.240.000431
ORF3a148C148CtgCtgT11AY.34.10.00051
ORF3a148C148CtgCtgT11AY.360.000148
ORF3a148C148CtgCtgT11AY.370.000316
ORF3a148C148CtgCtgT11AY.420.00004
ORF3a148C148CtgCtgT11AY.46.60.000072
ORF3a148C148CtgCtgT11AY.5.40.000277
ORF3a148C148CtgCtgT11AY.580.000907
ORF3a148C148CtgCtgT11AY.620.000436
ORF3a148C148CtgCtgT11AY.650.000533
ORF3a148C148CtgCtgT11AY.690.000187
ORF3a148C148CtgCtgT11AY.710.000475
ORF3a148C148CtgCtgT11AY.780.001541
ORF3a148C148CtgCtgT11AY.790.001211
ORF3a148C148CtgCtgT11AY.850.000427
ORF3a148C148CtgCtgT11AY.870.000833
ORF3a148C148CtgCtgT11AY.90.000068
ORF3a148C148CtgCtgT11AY.9.10.000084
ORF3a148C148CtgCtgT11B0.000128
ORF3a148C148CtgCtgT11B.1.1.1890.001513
ORF3a148C148CtgCtgT11B.1.1.250.000569
ORF3a148C148CtgCtgT11B.1.1.3110.000358
ORF3a148C148CtgCtgT11B.1.1.3120.001912
ORF3a148C148CtgCtgT11B.1.1.3150.008475
ORF3a148C148CtgCtgT11B.1.1.3690.000446
ORF3a148C148CtgCtgT11B.1.1.4480.002033
ORF3a148C148CtgCtgT11B.1.1.4830.038462
ORF3a148C148CtgCtgT11B.1.177.500.004695
ORF3a148C148CtgCtgT11B.1.177.720.00339
ORF3a148C148CtgCtgT11B.1.177.730.000566
ORF3a148C148CtgCtgT11B.1.2100.002132
ORF3a148C148CtgCtgT11B.1.214.20.0006
ORF3a148C148CtgCtgT11B.1.2210.000071
ORF3a148C148CtgCtgT11B.1.2250.015385
ORF3a148C148CtgCtgT11B.1.2580.000067
ORF3a148C148CtgCtgT11B.1.2600.003344
ORF3a148C148CtgCtgT11B.1.3430.020833
ORF3a148C148CtgCtgT11B.1.36.220.001208
ORF3a148C148CtgCtgT11B.1.3910.001127
ORF3a148C148CtgCtgT11B.1.4160.001269
ORF3a148C148CtgCtgT11B.1.438.10.000107
ORF3a148C148CtgCtgT11B.1.5030.002488
ORF3a148C148CtgCtgT11B.1.5470.02439
ORF3a148C148CtgCtgT11B.1.5610.000397
ORF3a148C148CtgCtgT11B.1.5750.000303
ORF3a148C148CtgCtgT11B.1.5950.000261
ORF3a148C148CtgCtgT11B.1.6090.000479
ORF3a148C148CtgCtgT11B.1.6230.000536
ORF3a148C148CtgCtgT11B.1.6280.000352
ORF3a148C148CtgCtgT11B.1.6370.000073
ORF3a148C148CtgCtgT11B.330.021277
ORF3a148C148CtgCtgT11B.610.005747
ORF3a148C148CtgCtgT11C.230.005814
ORF3a148C148CtgCtgT11C.36.30.000567
ORF3a148C148CtgCtgT11C.370.000116
ORF3a148C148CtgCtgT11P.1.140.000048
ORF3a148C148CtgCtgT11P.30.001595
ORF3a148C148CtgCtgT11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.