CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = A99A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a99A99AsyngcTgcC186614550.77974325687-25689
ORF3a99A99AsyngcTgcA18663030.16237925687-25689
ORF3a99A99AsyngcTgcG18661080.057877825687-25689

Details of the mutation A99A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a99A99AgcTgcC14551866All0.000278
ORF3a99A99AgcTgcA3031866All0.000058
ORF3a99A99AgcTgcG1081866All0.000021
ORF3a99A99AgcTgcC736737AY.520.599349
ORF3a99A99AgcTgcA1737AY.520.000814
ORF3a99A99AgcTgcA87250B.1.1.70.000078
ORF3a99A99AgcTgcG83250B.1.1.70.000074
ORF3a99A99AgcTgcC80250B.1.1.70.000072
ORF3a99A99AgcTgcC225230B.1.617.20.000847
ORF3a99A99AgcTgcA5230B.1.617.20.000019
ORF3a99A99AgcTgcA113113B.1.5760.102448
ORF3a99A99AgcTgcC9494AY.1190.003319
ORF3a99A99AgcTgcC7070B.1.1890.300429
ORF3a99A99AgcTgcC3240AY.40.00005
ORF3a99A99AgcTgcG540AY.40.000008
ORF3a99A99AgcTgcA340AY.40.000005
ORF3a99A99AgcTgcA2536B.1.20.00022
ORF3a99A99AgcTgcC1136B.1.20.000097
ORF3a99A99AgcTgcC3535AY.1200.001301
ORF3a99A99AgcTgcA2431B.10.00022
ORF3a99A99AgcTgcC731B.10.000064
ORF3a99A99AgcTgcC2727AY.620.011765
ORF3a99A99AgcTgcC2627P.10.00041
ORF3a99A99AgcTgcA127P.10.000016
ORF3a99A99AgcTgcA1014AY.1030.000062
ORF3a99A99AgcTgcC414AY.1030.000025
ORF3a99A99AgcTgcC1313AY.440.000079
ORF3a99A99AgcTgcG99B.1.1.2840.000967
ORF3a99A99AgcTgcC57AY.250.00003
ORF3a99A99AgcTgcA27AY.250.000012
ORF3a99A99AgcTgcC57AY.430.000022
ORF3a99A99AgcTgcG17AY.430.000004
ORF3a99A99AgcTgcA17AY.430.000004
ORF3a99A99AgcTgcC46AY.98.10.000194
ORF3a99A99AgcTgcA26AY.98.10.000097
ORF3a99A99AgcTgcC45AY.390.000099
ORF3a99A99AgcTgcG15AY.390.000025
ORF3a99A99AgcTgcC55AY.610.000524
ORF3a99A99AgcTgcG55B.1.6370.000365
ORF3a99A99AgcTgcC44AY.30.00004
ORF3a99A99AgcTgcC24B.1.10.000036
ORF3a99A99AgcTgcA24B.1.10.000036
ORF3a99A99AgcTgcC44B.1.1.5190.000159
ORF3a99A99AgcTgcC23AY.200.000078
ORF3a99A99AgcTgcA13AY.200.000039
ORF3a99A99AgcTgcC33AY.260.000085
ORF3a99A99AgcTgcA33AY.290.000047
ORF3a99A99AgcTgcC33AY.670.001393
ORF3a99A99AgcTgcC33AY.750.000168
ORF3a99A99AgcTgcC33B.1.1.390.001529
ORF3a99A99AgcTgcA23B.1.2580.000133
ORF3a99A99AgcTgcC13B.1.2580.000067
ORF3a99A99AgcTgcC33B.1.258.140.002941
ORF3a99A99AgcTgcA220.111111
ORF3a99A99AgcTgcA22AY.1000.000092
ORF3a99A99AgcTgcC22AY.16.10.00094
ORF3a99A99AgcTgcC22AY.4.20.000043
ORF3a99A99AgcTgcC22AY.460.000208
ORF3a99A99AgcTgcC22AY.7.10.000225
ORF3a99A99AgcTgcA22AY.700.000417
ORF3a99A99AgcTgcC22AY.850.000854
ORF3a99A99AgcTgcA12B.1.1.330.000421
ORF3a99A99AgcTgcG12B.1.1.330.000421
ORF3a99A99AgcTgcC22B.1.1600.000062
ORF3a99A99AgcTgcG12B.1.4290.000024
ORF3a99A99AgcTgcA12B.1.4290.000024
ORF3a99A99AgcTgcC12B.1.5960.000087
ORF3a99A99AgcTgcA12B.1.5960.000087
ORF3a99A99AgcTgcA22C.36.30.001134
ORF3a99A99AgcTgcC11AE.80.000489
ORF3a99A99AgcTgcC11AY.1090.00074
ORF3a99A99AgcTgcC11AY.120.20.001285
ORF3a99A99AgcTgcC11AY.130.000161
ORF3a99A99AgcTgcC11AY.230.00007
ORF3a99A99AgcTgcC11AY.300.000396
ORF3a99A99AgcTgcC11AY.330.000067
ORF3a99A99AgcTgcC11AY.350.000233
ORF3a99A99AgcTgcC11AY.39.10.00004
ORF3a99A99AgcTgcA11AY.4.50.000107
ORF3a99A99AgcTgcC11AY.470.000031
ORF3a99A99AgcTgcC11AY.480.000465
ORF3a99A99AgcTgcC11AY.50.000021
ORF3a99A99AgcTgcA11AY.550.000917
ORF3a99A99AgcTgcC11AY.590.00053
ORF3a99A99AgcTgcC11AY.90.000068
ORF3a99A99AgcTgcC11AY.930.000273
ORF3a99A99AgcTgcC11AY.980.000079
ORF3a99A99AgcTgcC11B.1.1.3110.000358
ORF3a99A99AgcTgcA11B.1.1.3260.001761
ORF3a99A99AgcTgcC11B.1.1.3970.002252
ORF3a99A99AgcTgcA11B.1.1770.000013
ORF3a99A99AgcTgcC11B.1.177.320.00135
ORF3a99A99AgcTgcC11B.1.2140.003663
ORF3a99A99AgcTgcA11B.1.2230.002778
ORF3a99A99AgcTgcC11B.1.2340.000132
ORF3a99A99AgcTgcC11B.1.2430.00007
ORF3a99A99AgcTgcC11B.1.258.220.002667
ORF3a99A99AgcTgcA11B.1.2850.090909
ORF3a99A99AgcTgcC11B.1.3510.00003
ORF3a99A99AgcTgcA11B.1.36.290.000517
ORF3a99A99AgcTgcC11B.1.4000.000429
ORF3a99A99AgcTgcC11B.1.438.10.000107
ORF3a99A99AgcTgcC11B.1.5170.000427
ORF3a99A99AgcTgcA11B.1.5260.000024
ORF3a99A99AgcTgcC11B.1.5640.000426
ORF3a99A99AgcTgcA11B.1.6210.000089
ORF3a99A99AgcTgcC11B.1.6230.000536
ORF3a99A99AgcTgcA11B.1.910.002075
ORF3a99A99AgcTgcC11C.370.000116
ORF3a99A99AgcTgcG11P.1.10.000318
ORF3a99A99AgcTgcG11P.1.140.000048
ORF3a99A99AgcTgcC11P.20.000187