CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : Mut = A23S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a23A23SnonsynGctTct720071970.99958325459-25461
ORF3a23A23SnonsynGcTTcC720030.00041666725459-25461

Details of the mutation A23S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a23A23SGctTct71977200All0.001377
ORF3a23A23SGcTTcC37200All0.000001
ORF3a23A23SGctTct13481348AY.90.091118
ORF3a23A23SGctTct831831B.1.1.70.000744
ORF3a23A23SGctTct393393B.1.617.20.00148
ORF3a23A23SGctTct375378AY.40.000584
ORF3a23A23SGcTTcC3378AY.40.000005
ORF3a23A23SGctTct344344AY.460.035803
ORF3a23A23SGctTct243243B.1.177.800.464627
ORF3a23A23SGctTct225225B.1.20.001981
ORF3a23A23SGctTct222222B.1.1.3850.991071
ORF3a23A23SGctTct199199AY.880.17595
ORF3a23A23SGctTct188188AY.430.000833
ORF3a23A23SGctTct186186B.10.001704
ORF3a23A23SGctTct163163B.1.2430.011342
ORF3a23A23SGctTct161161AY.440.00098
ORF3a23A23SGctTct153153AY.98.10.00741
ORF3a23A23SGctTct125125AY.250.000752
ORF3a23A23SGctTct117117AY.600.109756
ORF3a23A23SGctTct116116AY.30.001154
ORF3a23A23SGctTct8181AY.1200.003011
ORF3a23A23SGctTct7979AY.1020.002095
ORF3a23A23SGctTct7474B.1.10.001342
ORF3a23A23SGctTct7070B.1.1.1290.642202
ORF3a23A23SGctTct6868B.1.1420.197101
ORF3a23A23SGctTct6666AY.1030.00041
ORF3a23A23SGctTct6666B.1.1770.000869
ORF3a23A23SGctTct5454B.1.2210.003836
ORF3a23A23SGctTct5151P.30.08134
ORF3a23A23SGctTct4545AY.46.40.007403
ORF3a23A23SGctTct4343B.1.5750.013046
ORF3a23A23SGctTct3939B.1.1.3840.928571
ORF3a23A23SGctTct3838P.10.000599
ORF3a23A23SGctTct3434B.1.1.3010.040094
ORF3a23A23SGctTct3232AY.330.002137
ORF3a23A23SGctTct3131AY.260.000878
ORF3a23A23SGctTct3131AY.4.20.000672
ORF3a23A23SGctTct2626B.1.1.3060.011399
ORF3a23A23SGctTct2626B.1.5260.000611
ORF3a23A23SGctTct2525B.1.3510.000743
ORF3a23A23SGctTct2424B.1.177.810.004544
ORF3a23A23SGctTct2424B.1.221.30.02
ORF3a23A23SGctTct2323B.1.1.5190.000913
ORF3a23A23SGctTct2222AY.390.000544
ORF3a23A23SGctTct2222AY.4.50.002365
ORF3a23A23SGctTct2222AY.470.000684
ORF3a23A23SGctTct2121B.1.1600.000655
ORF3a23A23SGctTct2020B.1.2580.001331
ORF3a23A23SGctTct2020B.1.4290.000471
ORF3a23A23SGctTct2020B.1.4420.714286
ORF3a23A23SGctTct1818AY.200.0007
ORF3a23A23SGctTct1515AY.320.007987
ORF3a23A23SGctTct1515B.1.177.320.020243
ORF3a23A23SGctTct1414B0.001789
ORF3a23A23SGctTct1313AY.1000.000598
ORF3a23A23SGctTct1313AY.1170.001099
ORF3a23A23SGctTct1313AY.60.000535
ORF3a23A23SGctTct1313B.1.1.2840.001396
ORF3a23A23SGctTct1313C.370.001509
ORF3a23A23SGctTct1212AY.540.001144
ORF3a23A23SGctTct1111AY.20.003917
ORF3a23A23SGctTct1111AY.230.000767
ORF3a23A23SGctTct1111AY.610.001153
ORF3a23A23SGctTct1010AY.750.00056
ORF3a23A23SGctTct1010B.1.1880.166667
ORF3a23A23SGctTct1010B.1.360.001459
ORF3a23A23SGctTct1010B.1.617.10.00129
ORF3a23A23SGctTct99AY.75.10.001623
ORF3a23A23SGctTct99B.1.177.860.001651
ORF3a23A23SGctTct88AY.1160.002294
ORF3a23A23SGctTct88AY.1190.000282
ORF3a23A23SGctTct88AY.290.000126
ORF3a23A23SGctTct88AY.450.000973
ORF3a23A23SGctTct88P.1.170.001294
ORF3a23A23SGctTct77A.270.011589
ORF3a23A23SGctTct77AY.1060.002344
ORF3a23A23SGctTct77AY.360.001037
ORF3a23A23SGctTct77AY.420.000282
ORF3a23A23SGctTct77AY.50.000145
ORF3a23A23SGctTct77B.1.1.2200.013011
ORF3a23A23SGctTct77B.1.1.5210.037433
ORF3a23A23SGctTct77B.1.36.290.003621
ORF3a23A23SGctTct66AY.650.003198
ORF3a23A23SGctTct66AY.700.001251
ORF3a23A23SGctTct66B.1.3960.004234
ORF3a23A23SGctTct66B.1.5250.000679
ORF3a23A23SGctTct66P.1.140.000287
ORF3a23A23SGctTct55AY.130.000805
ORF3a23A23SGctTct55AY.350.001165
ORF3a23A23SGctTct55AY.9.20.000184
ORF3a23A23SGctTct55B.1.1.1740.016892
ORF3a23A23SGctTct55B.1.1.3180.001509
ORF3a23A23SGctTct55B.1.4270.000252
ORF3a23A23SGctTct55B.1.466.20.001956
ORF3a23A23SGctTct44AY.1100.000451
ORF3a23A23SGctTct44AY.1210.000541
ORF3a23A23SGctTct44AY.500.003197
ORF3a23A23SGctTct44AY.550.00367
ORF3a23A23SGctTct44AY.690.000747
ORF3a23A23SGctTct44AY.920.001149
ORF3a23A23SGctTct44B.1.6370.000292
ORF3a23A23SGctTct33AY.29.10.000662
ORF3a23A23SGctTct33AY.340.000291
ORF3a23A23SGctTct33AY.370.000948
ORF3a23A23SGctTct33AY.380.001498
ORF3a23A23SGctTct33AY.46.20.001906
ORF3a23A23SGctTct33AY.5.40.00083
ORF3a23A23SGctTct33AY.570.001969
ORF3a23A23SGctTct33AY.840.001312
ORF3a23A23SGctTct33AY.9.10.000251
ORF3a23A23SGctTct33AY.980.000237
ORF3a23A23SGctTct33B.1.1.2140.000166
ORF3a23A23SGctTct33B.1.1.3620.016854
ORF3a23A23SGctTct33D.20.000225
ORF3a23A23SGctTct33Q.10.000379
ORF3a23A23SGctTct33Q.80.000495
ORF3a23A23SGctTct22A.2.50.000998
ORF3a23A23SGctTct22AY.1180.000125
ORF3a23A23SGctTct22AY.120.20.002571
ORF3a23A23SGctTct22AY.16.10.00094
ORF3a23A23SGctTct22AY.270.000129
ORF3a23A23SGctTct22AY.3.10.000171
ORF3a23A23SGctTct22AY.46.50.000397
ORF3a23A23SGctTct22AY.580.001815
ORF3a23A23SGctTct22AY.630.000774
ORF3a23A23SGctTct22AY.640.00119
ORF3a23A23SGctTct22AY.680.000547
ORF3a23A23SGctTct22AY.99.20.000184
ORF3a23A23SGctTct22B.1.1.10.000653
ORF3a23A23SGctTct22B.1.1.2610.017241
ORF3a23A23SGctTct22B.1.1.330.000842
ORF3a23A23SGctTct22B.1.1.370.000386
ORF3a23A23SGctTct22B.1.1.500.001358
ORF3a23A23SGctTct22B.1.177.330.003289
ORF3a23A23SGctTct22B.1.1990.008264
ORF3a23A23SGctTct22B.1.2340.000264
ORF3a23A23SGctTct22B.1.3980.005952
ORF3a23A23SGctTct22B.1.4970.00063
ORF3a23A23SGctTct22B.1.5650.001621
ORF3a23A23SGctTct22B.1.6200.001892
ORF3a23A23SGctTct22B.1.6210.000177
ORF3a23A23SGctTct22P.20.000373
ORF3a23A23SGctTct22P.40.007605
ORF3a23A23SGctTct11A0.000387
ORF3a23A23SGctTct11A.110.058824
ORF3a23A23SGctTct11A.250.018182
ORF3a23A23SGctTct11AV.10.005051
ORF3a23A23SGctTct11AY.10.000396
ORF3a23A23SGctTct11AY.100.00053
ORF3a23A23SGctTct11AY.1080.001103
ORF3a23A23SGctTct11AY.1090.00074
ORF3a23A23SGctTct11AY.110.001339
ORF3a23A23SGctTct11AY.1130.000142
ORF3a23A23SGctTct11AY.120.2.10.000498
ORF3a23A23SGctTct11AY.140.000088
ORF3a23A23SGctTct11AY.23.10.000417
ORF3a23A23SGctTct11AY.39.10.00004
ORF3a23A23SGctTct11AY.4.2.10.000149
ORF3a23A23SGctTct11AY.46.10.001027
ORF3a23A23SGctTct11AY.520.000814
ORF3a23A23SGctTct11AY.530.000288
ORF3a23A23SGctTct11AY.590.00053
ORF3a23A23SGctTct11AY.670.000464
ORF3a23A23SGctTct11AY.70.000196
ORF3a23A23SGctTct11AY.7.20.000559
ORF3a23A23SGctTct11AY.730.000665
ORF3a23A23SGctTct11AY.740.000116
ORF3a23A23SGctTct11AY.780.001541
ORF3a23A23SGctTct11AY.80.000606
ORF3a23A23SGctTct11AY.890.004902
ORF3a23A23SGctTct11AY.910.00073
ORF3a23A23SGctTct11AY.950.000761
ORF3a23A23SGctTct11AY.960.002075
ORF3a23A23SGctTct11B.1.1.2040.00304
ORF3a23A23SGctTct11B.1.1.2160.00089
ORF3a23A23SGctTct11B.1.1.2220.000204
ORF3a23A23SGctTct11B.1.1.2370.005405
ORF3a23A23SGctTct11B.1.1.250.000569
ORF3a23A23SGctTct11B.1.1.2550.00303
ORF3a23A23SGctTct11B.1.1.2630.001558
ORF3a23A23SGctTct11B.1.1.280.000311
ORF3a23A23SGctTct11B.1.1.2940.001266
ORF3a23A23SGctTct11B.1.1.3020.002075
ORF3a23A23SGctTct11B.1.1.3050.003861
ORF3a23A23SGctTct11B.1.1.3480.000796
ORF3a23A23SGctTct11B.1.1.3690.000446
ORF3a23A23SGctTct11B.1.1.3720.000689
ORF3a23A23SGctTct11B.1.1.390.00051
ORF3a23A23SGctTct11B.1.1.4090.002833
ORF3a23A23SGctTct11B.1.1.4320.001266
ORF3a23A23SGctTct11B.1.1.4340.000349
ORF3a23A23SGctTct11B.1.1.4370.010417
ORF3a23A23SGctTct11B.1.1.4850.016667
ORF3a23A23SGctTct11B.1.1.50.008333
ORF3a23A23SGctTct11B.1.1.510.001718
ORF3a23A23SGctTct11B.1.1.520.012195
ORF3a23A23SGctTct11B.1.1580.02381
ORF3a23A23SGctTct11B.1.177.120.000152
ORF3a23A23SGctTct11B.1.177.210.000076
ORF3a23A23SGctTct11B.1.177.240.001295
ORF3a23A23SGctTct11B.1.177.60.000977
ORF3a23A23SGctTct11B.1.177.730.000566
ORF3a23A23SGctTct11B.1.177.80.000752
ORF3a23A23SGctTct11B.1.177.90.001332
ORF3a23A23SGctTct11B.1.2010.005682
ORF3a23A23SGctTct11B.1.2320.000537
ORF3a23A23SGctTct11B.1.2400.000216
ORF3a23A23SGctTct11B.1.2410.000812
ORF3a23A23SGctTct11B.1.258.170.000104
ORF3a23A23SGctTct11B.1.3490.000715
ORF3a23A23SGctTct11B.1.36.170.000494
ORF3a23A23SGctTct11B.1.36.360.000602
ORF3a23A23SGctTct11B.1.36.80.001
ORF3a23A23SGctTct11B.1.3670.000792
ORF3a23A23SGctTct11B.1.3690.000285
ORF3a23A23SGctTct11B.1.3990.001934
ORF3a23A23SGctTct11B.1.4040.001302
ORF3a23A23SGctTct11B.1.4110.003704
ORF3a23A23SGctTct11B.1.4160.001269
ORF3a23A23SGctTct11B.1.4710.002732
ORF3a23A23SGctTct11B.1.4990.00105
ORF3a23A23SGctTct11B.1.5270.003704
ORF3a23A23SGctTct11B.1.5300.007143
ORF3a23A23SGctTct11B.1.5410.004425
ORF3a23A23SGctTct11B.1.5640.000426
ORF3a23A23SGctTct11B.1.5960.000087
ORF3a23A23SGctTct11B.1.6090.000479
ORF3a23A23SGctTct11B.1.617.30.002985
ORF3a23A23SGctTct11B.1.621.10.000506
ORF3a23A23SGctTct11B.1.6340.003425
ORF3a23A23SGctTct11B.30.000831
ORF3a23A23SGctTct11B.3.10.001658
ORF3a23A23SGctTct11B.6.60.000889
ORF3a23A23SGctTct11C.36.3.10.002717
ORF3a23A23SGctTct11Q.40.000455
ORF3a23A23SGctTct11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.