CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 99 & Codon = gTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a99A99VnonsyngCtgTt689868940.9994225687-25689

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a99A99VgCtgTt68946898All0.001319
ORF3a99A99VgCtgTt17801780B.1.1.70.001593
ORF3a99A99VgCtgTt718718AY.430.003181
ORF3a99A99VgCtgTt621621AY.60.025541
ORF3a99A99VgCtgTt571571B.1.3560.986183
ORF3a99A99VgCtgTt316316B.1.617.20.00119
ORF3a99A99VgCtgTt303303AY.250.001822
ORF3a99A99VgCtgTt163163AY.40.000254
ORF3a99A99VgCtgTt143143AY.30.001422
ORF3a99A99VgCtgTt142142B.1.177.70.023409
ORF3a99A99VgCtgTt124124B.1.10.002249
ORF3a99A99VgCtgTt110110AY.800.124153
ORF3a99A99VgCtgTt108108B.1.120.864
ORF3a99A99VgCtgTt9090AY.1180.005638
ORF3a99A99VgCtgTt8383B.1.1600.002589
ORF3a99A99VgCtgTt7979B.1.3060.451429
ORF3a99A99VgCtgTt7373B.1.1.5190.002899
ORF3a99A99VgCtgTt7171AY.1030.000441
ORF3a99A99VgCtgTt6060B.1.20.000528
ORF3a99A99VgCtgTt6060B.1.4270.00303
ORF3a99A99VgCtgTt5656AY.390.001384
ORF3a99A99VgCtgTt5656AY.440.000341
ORF3a99A99VgCtgTt5656B.10.000513
ORF3a99A99VgCtgTt5050B.1.1770.000658
ORF3a99A99VgCtgTt4646P.1.80.220096
ORF3a99A99VgCtgTt4444Q.10.005558
ORF3a99A99VgCtgTt4040P.10.00063
ORF3a99A99VgCtgTt3434AY.120.010746
ORF3a99A99VgCtgTt3333AY.1210.004465
ORF3a99A99VgCtgTt2626AY.260.000736
ORF3a99A99VgCtgTt2626P.1.140.001243
ORF3a99A99VgCtgTt2222AY.50.000454
ORF3a99A99VgCtgTt1919AY.1020.000504
ORF3a99A99VgCtgTt1919B.1.4290.000447
ORF3a99A99VgCtgTt1818AY.4.20.00039
ORF3a99A99VgCtgTt1818B.1.1.2220.003672
ORF3a99A99VgCtgTt1717AE.80.008313
ORF3a99A99VgCtgTt1717B.1.1.2970.038031
ORF3a99A99VgCtgTt1717B.1.5260.0004
ORF3a99A99VgCtgTt1616AY.980.001264
ORF3a99A99VgCtgTt1515AY.46.20.00953
ORF3a99A99VgCtgTt1515B.1.177.600.003277
ORF3a99A99VgCtgTt1414B.1.3510.000416
ORF3a99A99VgCtgTt1212AY.1190.000424
ORF3a99A99VgCtgTt1212AY.470.000373
ORF3a99A99VgCtgTt1212B.1.177.440.006227
ORF3a99A99VgCtgTt1212C.370.001393
ORF3a99A99VgCtgTt1111AY.290.000174
ORF3a99A99VgCtgTt1111P.1.150.002556
ORF3a99A99VgCtgTt1010A0.00387
ORF3a99A99VgCtgTt1010AY.200.000389
ORF3a99A99VgCtgTt1010B.1.1.280.003112
ORF3a99A99VgCtgTt1010P.20.001866
ORF3a99A99VgCtgTt99B.1.1.2140.000499
ORF3a99A99VgCtgTt99B.1.1.4200.009054
ORF3a99A99VgCtgTt99B.1.2320.004836
ORF3a99A99VgCtgTt88AY.1130.001139
ORF3a99A99VgCtgTt88AY.270.000518
ORF3a99A99VgCtgTt88AY.3.10.000682
ORF3a99A99VgCtgTt88AY.330.000534
ORF3a99A99VgCtgTt88AY.340.000776
ORF3a99A99VgCtgTt88AY.5.30.002699
ORF3a99A99VgCtgTt88AY.99.20.000737
ORF3a99A99VgCtgTt88B.1.6210.000708
ORF3a99A99VgCtgTt88B.1.6370.000585
ORF3a99A99VgCtgTt88N.50.014134
ORF3a99A99VgCtgTt77AY.690.001307
ORF3a99A99VgCtgTt77AY.9.20.000257
ORF3a99A99VgCtgTt77B.1.2430.000487
ORF3a99A99VgCtgTt77B.1.30.018325
ORF3a99A99VgCtgTt77B.1.6090.003356
ORF3a99A99VgCtgTt77Q.80.001154
ORF3a99A99VgCtgTt66AY.230.000418
ORF3a99A99VgCtgTt66AY.39.10.000238
ORF3a99A99VgCtgTt66B.1.1.1890.009077
ORF3a99A99VgCtgTt66B.1.1.1920.013857
ORF3a99A99VgCtgTt66B.1.1.330.002525
ORF3a99A99VgCtgTt66B.1.6280.002114
ORF3a99A99VgCtgTt66C.360.005464
ORF3a99A99VgCtgTt66R.10.00054
ORF3a99A99VgCtgTt55AY.420.000201
ORF3a99A99VgCtgTt55AY.510.004545
ORF3a99A99VgCtgTt55AY.540.000477
ORF3a99A99VgCtgTt55AY.610.000524
ORF3a99A99VgCtgTt55AY.730.003327
ORF3a99A99VgCtgTt55B.1.1470.003779
ORF3a99A99VgCtgTt55B.1.177.560.003338
ORF3a99A99VgCtgTt55B.1.2580.000333
ORF3a99A99VgCtgTt55B.1.360.00073
ORF3a99A99VgCtgTt55B.1.5650.004052
ORF3a99A99VgCtgTt55B.1.5960.000436
ORF3a99A99VgCtgTt55B.1.617.10.000645
ORF3a99A99VgCtgTt35B.1.910.006224
ORF3a99A99VgCtgTt240.111111
ORF3a99A99VgCtgTt44A.270.006623
ORF3a99A99VgCtgTt44AY.1060.00134
ORF3a99A99VgCtgTt44AY.1170.000338
ORF3a99A99VgCtgTt44AY.190.004561
ORF3a99A99VgCtgTt44AY.920.001149
ORF3a99A99VgCtgTt44AY.98.10.000194
ORF3a99A99VgCtgTt44B.1.1.2840.00043
ORF3a99A99VgCtgTt44B.1.1.3180.001207
ORF3a99A99VgCtgTt44B.1.1.3710.041667
ORF3a99A99VgCtgTt44B.1.177.500.018779
ORF3a99A99VgCtgTt44B.1.177.810.000757
ORF3a99A99VgCtgTt33A.23.10.002113
ORF3a99A99VgCtgTt33AY.1000.000138
ORF3a99A99VgCtgTt33AY.1200.000112
ORF3a99A99VgCtgTt33AY.23.10.001252
ORF3a99A99VgCtgTt33AY.4.2.10.000447
ORF3a99A99VgCtgTt33B0.000383
ORF3a99A99VgCtgTt33B.1.1.250.001706
ORF3a99A99VgCtgTt33B.1.1110.003525
ORF3a99A99VgCtgTt33B.1.177.520.005272
ORF3a99A99VgCtgTt33B.1.177.730.001699
ORF3a99A99VgCtgTt33B.1.2210.000213
ORF3a99A99VgCtgTt33B.1.2340.000396
ORF3a99A99VgCtgTt33B.1.3780.020548
ORF3a99A99VgCtgTt33B.1.5760.00272
ORF3a99A99VgCtgTt33B.400.001093
ORF3a99A99VgCtgTt22AY.1160.000574
ORF3a99A99VgCtgTt22AY.130.000322
ORF3a99A99VgCtgTt22AY.160.000759
ORF3a99A99VgCtgTt22AY.4.50.000215
ORF3a99A99VgCtgTt22AY.450.000243
ORF3a99A99VgCtgTt22AY.700.000417
ORF3a99A99VgCtgTt22AY.750.000112
ORF3a99A99VgCtgTt22AY.90.000135
ORF3a99A99VgCtgTt22AY.950.001522
ORF3a99A99VgCtgTt22B.1.1.10.000653
ORF3a99A99VgCtgTt22B.1.1.1630.015267
ORF3a99A99VgCtgTt22B.1.1.2200.003717
ORF3a99A99VgCtgTt22B.1.1.3260.003521
ORF3a99A99VgCtgTt22B.1.1.500.001358
ORF3a99A99VgCtgTt22B.1.1.5130.024691
ORF3a99A99VgCtgTt22B.1.1.5230.003125
ORF3a99A99VgCtgTt22B.1.110.30.001437
ORF3a99A99VgCtgTt22B.1.160.160.001859
ORF3a99A99VgCtgTt22B.1.177.120.000303
ORF3a99A99VgCtgTt22B.1.2650.002541
ORF3a99A99VgCtgTt22B.1.2790.001027
ORF3a99A99VgCtgTt22B.1.3670.001585
ORF3a99A99VgCtgTt22B.1.3690.00057
ORF3a99A99VgCtgTt22B.1.5640.000852
ORF3a99A99VgCtgTt22B.1.564.10.003155
ORF3a99A99VgCtgTt22B.1.5750.000607
ORF3a99A99VgCtgTt22B.1.5880.00182
ORF3a99A99VgCtgTt22B.1.5970.009259
ORF3a99A99VgCtgTt22B.1.6250.004706
ORF3a99A99VgCtgTt22D.20.00015
ORF3a99A99VgCtgTt22P.1.130.001797
ORF3a99A99VgCtgTt22P.1.170.000324
ORF3a99A99VgCtgTt11A.250.018182
ORF3a99A99VgCtgTt11A.50.001923
ORF3a99A99VgCtgTt11AA.40.009091
ORF3a99A99VgCtgTt11AB.10.008197
ORF3a99A99VgCtgTt11AE.10.011364
ORF3a99A99VgCtgTt11AT.10.005128
ORF3a99A99VgCtgTt11AU.30.00211
ORF3a99A99VgCtgTt11AY.1050.000643
ORF3a99A99VgCtgTt11AY.1090.00074
ORF3a99A99VgCtgTt11AY.1100.000113
ORF3a99A99VgCtgTt11AY.1140.000231
ORF3a99A99VgCtgTt11AY.140.000088
ORF3a99A99VgCtgTt11AY.16.10.00047
ORF3a99A99VgCtgTt11AY.320.000532
ORF3a99A99VgCtgTt11AY.350.000233
ORF3a99A99VgCtgTt11AY.4.10.000737
ORF3a99A99VgCtgTt11AY.4.30.000842
ORF3a99A99VgCtgTt11AY.400.000964
ORF3a99A99VgCtgTt11AY.46.60.000072
ORF3a99A99VgCtgTt11AY.480.000465
ORF3a99A99VgCtgTt11AY.530.000288
ORF3a99A99VgCtgTt11AY.590.00053
ORF3a99A99VgCtgTt11AY.620.000436
ORF3a99A99VgCtgTt11AY.630.000387
ORF3a99A99VgCtgTt11AY.650.000533
ORF3a99A99VgCtgTt11AY.75.10.00018
ORF3a99A99VgCtgTt11AY.770.001127
ORF3a99A99VgCtgTt11AY.80.000606
ORF3a99A99VgCtgTt11AY.890.004902
ORF3a99A99VgCtgTt11B.1.1.100.001115
ORF3a99A99VgCtgTt11B.1.1.2390.032258
ORF3a99A99VgCtgTt11B.1.1.2560.013699
ORF3a99A99VgCtgTt11B.1.1.2650.003155
ORF3a99A99VgCtgTt11B.1.1.3050.003861
ORF3a99A99VgCtgTt11B.1.1.3440.010753
ORF3a99A99VgCtgTt11B.1.1.3620.005618
ORF3a99A99VgCtgTt11B.1.1.3680.003086
ORF3a99A99VgCtgTt11B.1.1.3690.000446
ORF3a99A99VgCtgTt11B.1.1.390.00051
ORF3a99A99VgCtgTt11B.1.1.3980.003226
ORF3a99A99VgCtgTt11B.1.1.4130.006897
ORF3a99A99VgCtgTt11B.1.1.4160.000905
ORF3a99A99VgCtgTt11B.1.1.4350.034483
ORF3a99A99VgCtgTt11B.1.1.930.025641
ORF3a99A99VgCtgTt11B.1.1120.005181
ORF3a99A99VgCtgTt11B.1.1180.006711
ORF3a99A99VgCtgTt11B.1.1390.000733
ORF3a99A99VgCtgTt11B.1.177.100.000878
ORF3a99A99VgCtgTt11B.1.177.320.00135
ORF3a99A99VgCtgTt11B.1.177.580.001332
ORF3a99A99VgCtgTt11B.1.177.870.000728
ORF3a99A99VgCtgTt11B.1.1990.004132
ORF3a99A99VgCtgTt11B.1.2390.001221
ORF3a99A99VgCtgTt11B.1.258.140.00098
ORF3a99A99VgCtgTt11B.1.2820.014925
ORF3a99A99VgCtgTt11B.1.3240.001605
ORF3a99A99VgCtgTt11B.1.3330.010526
ORF3a99A99VgCtgTt11B.1.3360.002439
ORF3a99A99VgCtgTt11B.1.36.100.004785
ORF3a99A99VgCtgTt11B.1.36.170.000494
ORF3a99A99VgCtgTt11B.1.36.180.00042
ORF3a99A99VgCtgTt11B.1.36.220.001208
ORF3a99A99VgCtgTt11B.1.36.290.000517
ORF3a99A99VgCtgTt11B.1.36.80.001
ORF3a99A99VgCtgTt11B.1.4000.000429
ORF3a99A99VgCtgTt11B.1.4170.028571
ORF3a99A99VgCtgTt11B.1.466.20.000391
ORF3a99A99VgCtgTt11B.1.4700.001404
ORF3a99A99VgCtgTt11B.1.4730.019231
ORF3a99A99VgCtgTt11B.1.4910.052632
ORF3a99A99VgCtgTt11B.1.4920.007042
ORF3a99A99VgCtgTt11B.1.5250.000113
ORF3a99A99VgCtgTt11B.1.5610.000397
ORF3a99A99VgCtgTt11B.1.5820.000491
ORF3a99A99VgCtgTt11B.1.621.10.000506
ORF3a99A99VgCtgTt11B.1.6310.003367
ORF3a99A99VgCtgTt11B.1.9.50.005682
ORF3a99A99VgCtgTt11C.160.00106
ORF3a99A99VgCtgTt11P.1.120.000484
ORF3a99A99VgCtgTt11Q.30.000145