CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 99 & Codon = Tct

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a99A99SnonsynGctTct530753040.99943525687-25689

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a99A99SGctTct53045307All0.001014
ORF3a99A99SGctTct827827AY.40.001287
ORF3a99A99SGctTct676676B.1.1.70.000605
ORF3a99A99SGctTct383383B.1.20.003372
ORF3a99A99SGctTct305305B.1.617.20.001148
ORF3a99A99SGctTct280280B.1.2580.018633
ORF3a99A99SGctTct274274A.210.759003
ORF3a99A99SGctTct238238AY.430.001054
ORF3a99A99SGctTct185185B.10.001695
ORF3a99A99SGctTct113113AY.440.000688
ORF3a99A99SGctTct109109AY.1020.00289
ORF3a99A99SGctTct102102B.1.1770.001343
ORF3a99A99SGctTct9999B.1.1.5190.003931
ORF3a99A99SGctTct9494AY.9.20.003453
ORF3a99A99SGctTct9090AY.1030.000559
ORF3a99A99SGctTct8787AY.390.00215
ORF3a99A99SGctTct7676AY.30.000756
ORF3a99A99SGctTct7272AY.50.001487
ORF3a99A99SGctTct5858AY.260.001642
ORF3a99A99SGctTct5757AY.250.000343
ORF3a99A99SGctTct5252B.1.5260.001222
ORF3a99A99SGctTct4848B.1.10.000871
ORF3a99A99SGctTct4747P.10.00074
ORF3a99A99SGctTct4040B.1.5300.285714
ORF3a99A99SGctTct3838AY.9.10.003182
ORF3a99A99SGctTct3535AY.1090.025888
ORF3a99A99SGctTct3434B.1.1.3180.01026
ORF3a99A99SGctTct3131B.1.6090.014861
ORF3a99A99SGctTct2626AY.270.001683
ORF3a99A99SGctTct2626B.1.2210.001847
ORF3a99A99SGctTct2525B.1.1.920.833333
ORF3a99A99SGctTct2323B.1.1.4320.029114
ORF3a99A99SGctTct2323B.1.1600.000717
ORF3a99A99SGctTct2222B.1.3510.000654
ORF3a99A99SGctTct1919AY.150.042222
ORF3a99A99SGctTct1717B.1.1.3411
ORF3a99A99SGctTct1616AY.1200.000595
ORF3a99A99SGctTct1616AY.1210.002165
ORF3a99A99SGctTct1616AY.200.000622
ORF3a99A99SGctTct1616B.1.6370.001169
ORF3a99A99SGctTct1515AY.330.001002
ORF3a99A99SGctTct1414AY.1170.001183
ORF3a99A99SGctTct1414AY.46.40.002303
ORF3a99A99SGctTct1212AY.460.001249
ORF3a99A99SGctTct1212B.1.5950.003132
ORF3a99A99SGctTct1111AY.1180.000689
ORF3a99A99SGctTct1111AY.1190.000388
ORF3a99A99SGctTct1111AY.46.60.000794
ORF3a99A99SGctTct1111B.1.1.2220.002244
ORF3a99A99SGctTct1010AY.1160.002868
ORF3a99A99SGctTct1010AY.230.000697
ORF3a99A99SGctTct1010AY.290.000158
ORF3a99A99SGctTct1010AY.420.000402
ORF3a99A99SGctTct1010AY.610.001048
ORF3a99A99SGctTct1010B.1.4290.000235
ORF3a99A99SGctTct1010B.1.617.10.00129
ORF3a99A99SGctTct99AY.140.000792
ORF3a99A99SGctTct99B.1.177.810.001704
ORF3a99A99SGctTct99B.1.360.001313
ORF3a99A99SGctTct88AY.120.10.002568
ORF3a99A99SGctTct88AY.160.003037
ORF3a99A99SGctTct88AY.20.002849
ORF3a99A99SGctTct88AY.450.000973
ORF3a99A99SGctTct88AY.750.000448
ORF3a99A99SGctTct88P.1.140.000382
ORF3a99A99SGctTct77AY.840.003062
ORF3a99A99SGctTct77AY.980.000553
ORF3a99A99SGctTct77B.1.351.30.006135
ORF3a99A99SGctTct66AY.1000.000276
ORF3a99A99SGctTct66AY.360.000889
ORF3a99A99SGctTct66AY.4.20.00013
ORF3a99A99SGctTct66AY.4.2.10.000894
ORF3a99A99SGctTct66B.1.1.2160.005343
ORF3a99A99SGctTct66B.1.2340.000792
ORF3a99A99SGctTct66B.1.4270.000303
ORF3a99A99SGctTct66B.1.466.20.002347
ORF3a99A99SGctTct66B.1.5250.000679
ORF3a99A99SGctTct66Q.80.000989
ORF3a99A99SGctTct350.166667
ORF3a99A99SGctTct55AY.4.50.000537
ORF3a99A99SGctTct55AY.60.000206
ORF3a99A99SGctTct55B.1.258.110.001982
ORF3a99A99SGctTct55B.1.5960.000436
ORF3a99A99SGctTct55B.390.011655
ORF3a99A99SGctTct55C.360.004554
ORF3a99A99SGctTct44AY.29.10.000882
ORF3a99A99SGctTct44AY.680.001095
ORF3a99A99SGctTct44AY.7.10.000451
ORF3a99A99SGctTct44AY.870.003331
ORF3a99A99SGctTct44AY.98.10.000194
ORF3a99A99SGctTct44B.1.1.2180.030769
ORF3a99A99SGctTct44B.1.1.2910.00297
ORF3a99A99SGctTct44B.1.438.10.000429
ORF3a99A99SGctTct44B.1.6210.000354
ORF3a99A99SGctTct44B.1.9.50.022727
ORF3a99A99SGctTct44C.370.000464
ORF3a99A99SGctTct44P.20.000747
ORF3a99A99SGctTct33AY.39.10.000119
ORF3a99A99SGctTct33AY.4.40.001227
ORF3a99A99SGctTct33AY.470.000093
ORF3a99A99SGctTct33AY.90.000203
ORF3a99A99SGctTct33AY.910.002191
ORF3a99A99SGctTct33B.1.1.100.003344
ORF3a99A99SGctTct33B.1.160.250.033333
ORF3a99A99SGctTct33B.1.177.600.000655
ORF3a99A99SGctTct33B.1.177.620.003576
ORF3a99A99SGctTct33B.1.220.003953
ORF3a99A99SGctTct33B.1.3110.000824
ORF3a99A99SGctTct33B.1.36.160.004274
ORF3a99A99SGctTct33B.1.36.290.001552
ORF3a99A99SGctTct33B.1.3970.014563
ORF3a99A99SGctTct33B.1.4200.03125
ORF3a99A99SGctTct33C.310.053571
ORF3a99A99SGctTct33R.10.00027
ORF3a99A99SGctTct22A.2.5.10.009615
ORF3a99A99SGctTct22A.23.10.001408
ORF3a99A99SGctTct22AY.1060.00067
ORF3a99A99SGctTct22AY.1080.002205
ORF3a99A99SGctTct22AY.130.000322
ORF3a99A99SGctTct22AY.16.10.00094
ORF3a99A99SGctTct22AY.350.000466
ORF3a99A99SGctTct22AY.5.30.000675
ORF3a99A99SGctTct22AY.510.001818
ORF3a99A99SGctTct22AY.630.000774
ORF3a99A99SGctTct22AY.710.00095
ORF3a99A99SGctTct22AY.950.001522
ORF3a99A99SGctTct22B.1.1.10.000653
ORF3a99A99SGctTct22B.1.1.2770.001517
ORF3a99A99SGctTct22B.1.177.570.000562
ORF3a99A99SGctTct22B.1.2400.000431
ORF3a99A99SGctTct22B.1.2430.000139
ORF3a99A99SGctTct22B.1.36.80.002
ORF3a99A99SGctTct22B.1.3930.057143
ORF3a99A99SGctTct22B.1.3950.014085
ORF3a99A99SGctTct22B.1.4380.013072
ORF3a99A99SGctTct22B.1.4560.006536
ORF3a99A99SGctTct22B.1.5030.004975
ORF3a99A99SGctTct22B.1.5510.002581
ORF3a99A99SGctTct12B.1.910.002075
ORF3a99A99SGctTct22P.1.170.000324
ORF3a99A99SGctTct11A0.000387
ORF3a99A99SGctTct11A.10.000282
ORF3a99A99SGctTct11AE.80.000489
ORF3a99A99SGctTct11AY.1130.000142
ORF3a99A99SGctTct11AY.120.000316
ORF3a99A99SGctTct11AY.240.000431
ORF3a99A99SGctTct11AY.3.10.000085
ORF3a99A99SGctTct11AY.300.000396
ORF3a99A99SGctTct11AY.320.000532
ORF3a99A99SGctTct11AY.340.000097
ORF3a99A99SGctTct11AY.410.000294
ORF3a99A99SGctTct11AY.46.20.000635
ORF3a99A99SGctTct11AY.520.000814
ORF3a99A99SGctTct11AY.550.000917
ORF3a99A99SGctTct11AY.620.000436
ORF3a99A99SGctTct11AY.740.000116
ORF3a99A99SGctTct11AY.75.10.00018
ORF3a99A99SGctTct11AY.790.001211
ORF3a99A99SGctTct11AY.820.001357
ORF3a99A99SGctTct11AY.930.000273
ORF3a99A99SGctTct11AY.940.000443
ORF3a99A99SGctTct11AY.990.001049
ORF3a99A99SGctTct11AY.99.20.000092
ORF3a99A99SGctTct11B0.000128
ORF3a99A99SGctTct11B.1.1.1350.004695
ORF3a99A99SGctTct11B.1.1.1610.003534
ORF3a99A99SGctTct11B.1.1.1860.003436
ORF3a99A99SGctTct11B.1.1.1920.002309
ORF3a99A99SGctTct11B.1.1.1940.00495
ORF3a99A99SGctTct11B.1.1.2070.001182
ORF3a99A99SGctTct11B.1.1.2140.000055
ORF3a99A99SGctTct11B.1.1.2430.004082
ORF3a99A99SGctTct11B.1.1.2580.003257
ORF3a99A99SGctTct11B.1.1.2630.001558
ORF3a99A99SGctTct11B.1.1.2790.001121
ORF3a99A99SGctTct11B.1.1.280.000311
ORF3a99A99SGctTct11B.1.1.2820.011628
ORF3a99A99SGctTct11B.1.1.2840.000107
ORF3a99A99SGctTct11B.1.1.3120.001912
ORF3a99A99SGctTct11B.1.1.3170.000412
ORF3a99A99SGctTct11B.1.1.370.000193
ORF3a99A99SGctTct11B.1.1.4160.000905
ORF3a99A99SGctTct11B.1.1.4190.007407
ORF3a99A99SGctTct11B.1.1.460.004367
ORF3a99A99SGctTct11B.1.1.510.001718
ORF3a99A99SGctTct11B.1.1.5260.003546
ORF3a99A99SGctTct11B.1.1.710.006061
ORF3a99A99SGctTct11B.1.1390.000733
ORF3a99A99SGctTct11B.1.1470.000756
ORF3a99A99SGctTct11B.1.1570.002985
ORF3a99A99SGctTct11B.1.1610.017241
ORF3a99A99SGctTct11B.1.1700.00431
ORF3a99A99SGctTct11B.1.177.210.000076
ORF3a99A99SGctTct11B.1.177.560.000668
ORF3a99A99SGctTct11B.1.177.70.000165
ORF3a99A99SGctTct11B.1.177.730.000566
ORF3a99A99SGctTct11B.1.177.750.001041
ORF3a99A99SGctTct11B.1.177.790.002342
ORF3a99A99SGctTct11B.1.177.820.000477
ORF3a99A99SGctTct11B.1.2060.000816
ORF3a99A99SGctTct11B.1.2100.002132
ORF3a99A99SGctTct11B.1.2220.001692
ORF3a99A99SGctTct11B.1.2410.000812
ORF3a99A99SGctTct11B.1.2500.014493
ORF3a99A99SGctTct11B.1.3610.001289
ORF3a99A99SGctTct11B.1.3670.000792
ORF3a99A99SGctTct11B.1.3800.006623
ORF3a99A99SGctTct11B.1.4040.001302
ORF3a99A99SGctTct11B.1.4080.00369
ORF3a99A99SGctTct11B.1.4280.00102
ORF3a99A99SGctTct11B.1.4970.000315
ORF3a99A99SGctTct11B.1.5200.021739
ORF3a99A99SGctTct11B.1.5650.00081
ORF3a99A99SGctTct11B.1.5760.000907
ORF3a99A99SGctTct11B.1.6000.005848
ORF3a99A99SGctTct11B.1.621.10.000506
ORF3a99A99SGctTct11B.1.6350.017544
ORF3a99A99SGctTct11B.1.9.30.038462
ORF3a99A99SGctTct11B.30.000831
ORF3a99A99SGctTct11B.6.60.000889
ORF3a99A99SGctTct11C.270.018519
ORF3a99A99SGctTct11C.350.000774
ORF3a99A99SGctTct11C.37.10.002618
ORF3a99A99SGctTct11D.20.000075
ORF3a99A99SGctTct11P.1.10.000318
ORF3a99A99SGctTct11P.1.100.000269
ORF3a99A99SGctTct11P.1.150.000232
ORF3a99A99SGctTct11P.1.70.000319
ORF3a99A99SGctTct11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.