CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 99

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF3a	99	A99V		nonsyn	gCt	gTt	6898	6894	0.99942	25687-25689
ORF3a	99	A99V		nonsyn	gCT	gTA	6898	3	0.000434909	25687-25689
ORF3a	99	A99V		nonsyn	gCT	gTG	6898	1	0.00014497	25687-25689
ORF3a	99	A99S		nonsyn	Gct	Tct	5307	5304	0.999435	25687-25689
ORF3a	99	A99S		nonsyn	GcT	TcA	5307	3	0.000565291	25687-25689
ORF3a	99	A99T		nonsyn	Gct	Act	3050	3050	1	25687-25689
ORF3a	99	A99A		syn	gcT	gcC	1866	1455	0.779743	25687-25689
ORF3a	99	A99A		syn	gcT	gcA	1866	303	0.162379	25687-25689
ORF3a	99	A99A		syn	gcT	gcG	1866	108	0.0578778	25687-25689
ORF3a	99	A99D		nonsyn	gCt	gAt	418	418	1	25687-25689
ORF3a	99	A99P		nonsyn	Gct	Cct	177	177	1	25687-25689
ORF3a	99	A99del		del	GCT	---	127	127	1	25687-25689
ORF3a	99	A99del1		del	gcT	gc-	82	81	0.987805	25687-25689
ORF3a	99	A99del1		del	GCt	-Tt	82	1	0.0121951	25687-25689
ORF3a	99	A99G		nonsyn	gCt	gGt	81	79	0.975309	25687-25689
ORF3a	99	A99G		nonsyn	gCT	gGG	81	2	0.0246914	25687-25689
ORF3a	99	A99F		nonsyn	GCt	TTt	27	27	1	25687-25689
ORF3a	99	A99del2		del	gCT	g--	7	4	0.571429	25687-25689
ORF3a	99	A99del2		del	GCt	--t	7	3	0.428571	25687-25689
ORF3a	99	A99L		nonsyn	GCT	TTA	3	3	1	25687-25689
ORF3a	99	A99I		nonsyn	GCt	ATt	2	2	1	25687-25689
ORF3a	99	A99E		nonsyn	gCT	gAA	2	2	1	25687-25689
ORF3a	99	A99C		nonsyn	GCt	TGt	1	1	1	25687-25689
ORF3a	99	A99Y		nonsyn	GCt	TAt	1	1	1	25687-25689

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF3a	99	A99V	gCt	gTt	6894	6898	All	0.001319
ORF3a	99	A99V	gCT	gTA	3	6898	All	0.000001
ORF3a	99	A99V	gCT	gTG	1	6898	All	0
ORF3a	99	A99S	Gct	Tct	5304	5307	All	0.001014
ORF3a	99	A99S	GcT	TcA	3	5307	All	0.000001
ORF3a	99	A99T	Gct	Act	3050	3050	All	0.000583
ORF3a	99	A99A	gcT	gcC	1455	1866	All	0.000278
ORF3a	99	A99A	gcT	gcA	303	1866	All	0.000058
ORF3a	99	A99A	gcT	gcG	108	1866	All	0.000021
ORF3a	99	A99V	gCt	gTt	1780	1780	B.1.1.7	0.001593
ORF3a	99	A99T	Gct	Act	1708	1708	B.1.1.7	0.001529
ORF3a	99	A99S	Gct	Tct	827	827	AY.4	0.001287
ORF3a	99	A99A	gcT	gcC	736	737	AY.52	0.599349
ORF3a	99	A99A	gcT	gcA	1	737	AY.52	0.000814
ORF3a	99	A99V	gCt	gTt	718	718	AY.43	0.003181
ORF3a	99	A99T	Gct	Act	705	705	AY.4	0.001097
ORF3a	99	A99S	Gct	Tct	676	676	B.1.1.7	0.000605
ORF3a	99	A99V	gCt	gTt	621	621	AY.6	0.025541
ORF3a	99	A99V	gCt	gTt	571	571	B.1.356	0.986183
ORF3a	99	A99D	gCt	gAt	418	418	All	0.00008
ORF3a	99	A99S	Gct	Tct	383	383	B.1.2	0.003372
ORF3a	99	A99V	gCt	gTt	316	316	B.1.617.2	0.00119
ORF3a	99	A99S	Gct	Tct	305	305	B.1.617.2	0.001148
ORF3a	99	A99V	gCt	gTt	303	303	AY.25	0.001822
ORF3a	99	A99S	Gct	Tct	280	280	B.1.258	0.018633
ORF3a	99	A99S	Gct	Tct	274	274	A.21	0.759003
ORF3a	99	A99A	gcT	gcA	87	250	B.1.1.7	0.000078
ORF3a	99	A99A	gcT	gcG	83	250	B.1.1.7	0.000074
ORF3a	99	A99A	gcT	gcC	80	250	B.1.1.7	0.000072
ORF3a	99	A99S	Gct	Tct	238	238	AY.43	0.001054
ORF3a	99	A99A	gcT	gcC	225	230	B.1.617.2	0.000847
ORF3a	99	A99A	gcT	gcA	5	230	B.1.617.2	0.000019
ORF3a	99	A99S	Gct	Tct	185	185	B.1	0.001695
ORF3a	99	A99P	Gct	Cct	177	177	All	0.000034
ORF3a	99	A99V	gCt	gTt	163	163	AY.4	0.000254
ORF3a	99	A99T	Gct	Act	149	149	AY.3	0.001482
ORF3a	99	A99V	gCt	gTt	143	143	AY.3	0.001422
ORF3a	99	A99V	gCt	gTt	142	142	B.1.177.7	0.023409
ORF3a	99	A99del	GCT	---	127	127	All	0.000024
ORF3a	99	A99V	gCt	gTt	124	124	B.1.1	0.002249
ORF3a	99	A99S	Gct	Tct	113	113	AY.44	0.000688
ORF3a	99	A99A	gcT	gcA	113	113	B.1.576	0.102448
ORF3a	99	A99V	gCt	gTt	110	110	AY.80	0.124153
ORF3a	99	A99S	Gct	Tct	109	109	AY.102	0.00289
ORF3a	99	A99V	gCt	gTt	108	108	B.1.12	0.864
ORF3a	99	A99S	Gct	Tct	102	102	B.1.177	0.001343
ORF3a	99	A99S	Gct	Tct	99	99	B.1.1.519	0.003931
ORF3a	99	A99A	gcT	gcC	94	94	AY.119	0.003319
ORF3a	99	A99S	Gct	Tct	94	94	AY.9.2	0.003453
ORF3a	99	A99T	Gct	Act	94	94	B.1.603	1
ORF3a	99	A99S	Gct	Tct	90	90	AY.103	0.000559
ORF3a	99	A99V	gCt	gTt	90	90	AY.118	0.005638
ORF3a	99	A99S	Gct	Tct	87	87	AY.39	0.00215
ORF3a	99	A99D	gCt	gAt	87	87	AY.5	0.001796
ORF3a	99	A99V	gCt	gTt	83	83	B.1.160	0.002589
ORF3a	99	A99del1	gcT	gc-	81	82	All	0.000015
ORF3a	99	A99del1	GCt	-Tt	1	82	All	0
ORF3a	99	A99G	gCt	gGt	79	81	All	0.000015
ORF3a	99	A99G	gCT	gGG	2	81	All	0
ORF3a	99	A99V	gCt	gTt	79	79	B.1.306	0.451429
ORF3a	99	A99S	Gct	Tct	76	76	AY.3	0.000756
ORF3a	99	A99V	gCt	gTt	73	73	B.1.1.519	0.002899
ORF3a	99	A99S	Gct	Tct	72	72	AY.5	0.001487
ORF3a	99	A99V	gCt	gTt	71	71	AY.103	0.000441
ORF3a	99	A99A	gcT	gcC	70	70	B.1.189	0.300429
ORF3a	99	A99P	Gct	Cct	68	68	AY.47	0.002115
ORF3a	99	A99del1	gcT	gc-	66	67	B.1.1.7	0.000059
ORF3a	99	A99del1	GCt	-Tt	1	67	B.1.1.7	0.000001
ORF3a	99	A99D	gCt	gAt	65	65	AY.103	0.000404
ORF3a	99	A99T	Gct	Act	64	64	B.1.1	0.001161
ORF3a	99	A99V	gCt	gTt	60	60	B.1.2	0.000528
ORF3a	99	A99V	gCt	gTt	60	60	B.1.427	0.00303
ORF3a	99	A99S	Gct	Tct	58	58	AY.26	0.001642
ORF3a	99	A99S	Gct	Tct	57	57	AY.25	0.000343
ORF3a	99	A99V	gCt	gTt	56	56	AY.39	0.001384
ORF3a	99	A99V	gCt	gTt	56	56	AY.44	0.000341
ORF3a	99	A99V	gCt	gTt	56	56	B.1	0.000513
ORF3a	99	A99S	Gct	Tct	52	52	B.1.526	0.001222
ORF3a	99	A99V	gCt	gTt	50	50	B.1.177	0.000658
ORF3a	99	A99S	Gct	Tct	48	48	B.1.1	0.000871
ORF3a	99	A99D	gCt	gAt	48	48	B.1.617.2	0.000181
ORF3a	99	A99S	Gct	Tct	47	47	P.1	0.00074
ORF3a	99	A99V	gCt	gTt	46	46	P.1.8	0.220096
ORF3a	99	A99V	gCt	gTt	44	44	Q.1	0.005558
ORF3a	99	A99D	gCt	gAt	43	43	P.1.14	0.002055
ORF3a	99	A99A	gcT	gcC	32	40	AY.4	0.00005
ORF3a	99	A99A	gcT	gcG	5	40	AY.4	0.000008
ORF3a	99	A99A	gcT	gcA	3	40	AY.4	0.000005
ORF3a	99	A99S	Gct	Tct	40	40	B.1.530	0.285714
ORF3a	99	A99V	gCt	gTt	40	40	P.1	0.00063
ORF3a	99	A99S	Gct	Tct	38	38	AY.9.1	0.003182
ORF3a	99	A99T	Gct	Act	36	36	B.1.2	0.000317
ORF3a	99	A99A	gcT	gcA	25	36	B.1.2	0.00022
ORF3a	99	A99A	gcT	gcC	11	36	B.1.2	0.000097
ORF3a	99	A99S	Gct	Tct	35	35	AY.109	0.025888
ORF3a	99	A99A	gcT	gcC	35	35	AY.120	0.001301
ORF3a	99	A99V	gCt	gTt	34	34	AY.12	0.010746
ORF3a	99	A99S	Gct	Tct	34	34	B.1.1.318	0.01026
ORF3a	99	A99del	GCT	---	34	34	B.1.1.7	0.00003
ORF3a	99	A99V	gCt	gTt	33	33	AY.121	0.004465
ORF3a	99	A99A	gcT	gcA	24	31	B.1	0.00022
ORF3a	99	A99A	gcT	gcC	7	31	B.1	0.000064
ORF3a	99	A99S	Gct	Tct	31	31	B.1.609	0.014861
ORF3a	99	A99F	GCt	TTt	27	27	All	0.000005
ORF3a	99	A99A	gcT	gcC	27	27	AY.62	0.011765
ORF3a	99	A99D	gCt	gAt	27	27	B.1.1.7	0.000024
ORF3a	99	A99A	gcT	gcC	26	27	P.1	0.00041
ORF3a	99	A99A	gcT	gcA	1	27	P.1	0.000016
ORF3a	99	A99V	gCt	gTt	26	26	AY.26	0.000736
ORF3a	99	A99S	Gct	Tct	26	26	AY.27	0.001683
ORF3a	99	A99S	Gct	Tct	26	26	B.1.221	0.001847
ORF3a	99	A99D	gCt	gAt	26	26	B.1.438.1	0.002789
ORF3a	99	A99V	gCt	gTt	26	26	P.1.14	0.001243
ORF3a	99	A99S	Gct	Tct	25	25	B.1.1.92	0.833333
ORF3a	99	A99T	Gct	Act	25	25	B.1.617.2	0.000094
ORF3a	99	A99P	Gct	Cct	23	23	AY.4.2	0.000499
ORF3a	99	A99D	gCt	gAt	23	23	B.1	0.000211
ORF3a	99	A99S	Gct	Tct	23	23	B.1.1.432	0.029114
ORF3a	99	A99S	Gct	Tct	23	23	B.1.160	0.000717
ORF3a	99	A99V	gCt	gTt	22	22	AY.5	0.000454
ORF3a	99	A99S	Gct	Tct	22	22	B.1.351	0.000654
ORF3a	99	A99V	gCt	gTt	19	19	AY.102	0.000504
ORF3a	99	A99S	Gct	Tct	19	19	AY.15	0.042222
ORF3a	99	A99G	gCt	gGt	19	19	AY.4	0.00003
ORF3a	99	A99V	gCt	gTt	19	19	B.1.429	0.000447
ORF3a	99	A99V	gCt	gTt	18	18	AY.4.2	0.00039
ORF3a	99	A99V	gCt	gTt	18	18	B.1.1.222	0.003672
ORF3a	99	A99T	Gct	Act	18	18	B.1.595	0.004697
ORF3a	99	A99T	Gct	Act	18	18	P.1.14	0.00086
ORF3a	99	A99V	gCt	gTt	17	17	AE.8	0.008313
ORF3a	99	A99T	Gct	Act	17	17	B.1	0.000156
ORF3a	99	A99V	gCt	gTt	17	17	B.1.1.297	0.038031
ORF3a	99	A99S	Gct	Tct	17	17	B.1.1.341	1
ORF3a	99	A99V	gCt	gTt	17	17	B.1.526	0.0004
ORF3a	99	A99T	Gct	Act	17	17	Q.8	0.002803
ORF3a	99	A99S	Gct	Tct	16	16	AY.120	0.000595
ORF3a	99	A99S	Gct	Tct	16	16	AY.121	0.002165
ORF3a	99	A99S	Gct	Tct	16	16	AY.20	0.000622
ORF3a	99	A99G	gCt	gGt	16	16	AY.68	0.00438
ORF3a	99	A99V	gCt	gTt	16	16	AY.98	0.001264
ORF3a	99	A99S	Gct	Tct	16	16	B.1.637	0.001169
ORF3a	99	A99S	Gct	Tct	15	15	AY.33	0.001002
ORF3a	99	A99V	gCt	gTt	15	15	AY.46.2	0.00953
ORF3a	99	A99V	gCt	gTt	15	15	B.1.177.60	0.003277
ORF3a	99	A99T	Gct	Act	14	14	AY.103	0.000087
ORF3a	99	A99A	gcT	gcA	10	14	AY.103	0.000062
ORF3a	99	A99A	gcT	gcC	4	14	AY.103	0.000025
ORF3a	99	A99S	Gct	Tct	14	14	AY.117	0.001183
ORF3a	99	A99S	Gct	Tct	14	14	AY.46.4	0.002303
ORF3a	99	A99V	gCt	gTt	14	14	B.1.351	0.000416
ORF3a	99	A99A	gcT	gcC	13	13	AY.44	0.000079
ORF3a	99	A99del	GCT	---	13	13	B.1	0.000119
ORF3a	99	A99T	Gct	Act	13	13	C.36.3	0.007374
ORF3a	99	A99V	gCt	gTt	12	12	AY.119	0.000424
ORF3a	99	A99D	gCt	gAt	12	12	AY.44	0.000073
ORF3a	99	A99S	Gct	Tct	12	12	AY.46	0.001249
ORF3a	99	A99V	gCt	gTt	12	12	AY.47	0.000373
ORF3a	99	A99V	gCt	gTt	12	12	B.1.177.44	0.006227
ORF3a	99	A99D	gCt	gAt	12	12	B.1.429	0.000282
ORF3a	99	A99S	Gct	Tct	12	12	B.1.595	0.003132
ORF3a	99	A99V	gCt	gTt	12	12	C.37	0.001393
ORF3a	99	A99P	Gct	Cct	11	11	AY.103	0.000068
ORF3a	99	A99S	Gct	Tct	11	11	AY.118	0.000689
ORF3a	99	A99S	Gct	Tct	11	11	AY.119	0.000388
ORF3a	99	A99V	gCt	gTt	11	11	AY.29	0.000174
ORF3a	99	A99S	Gct	Tct	11	11	AY.46.6	0.000794
ORF3a	99	A99S	Gct	Tct	11	11	B.1.1.222	0.002244
ORF3a	99	A99V	gCt	gTt	11	11	P.1.15	0.002556
ORF3a	99	A99V	gCt	gTt	10	10	A	0.00387
ORF3a	99	A99P	Gct	Cct	10	10	AY.113	0.001424
ORF3a	99	A99S	Gct	Tct	10	10	AY.116	0.002868
ORF3a	99	A99V	gCt	gTt	10	10	AY.20	0.000389
ORF3a	99	A99S	Gct	Tct	10	10	AY.23	0.000697
ORF3a	99	A99T	Gct	Act	10	10	AY.29	0.000158
ORF3a	99	A99S	Gct	Tct	10	10	AY.29	0.000158
ORF3a	99	A99S	Gct	Tct	10	10	AY.42	0.000402
ORF3a	99	A99G	gCt	gGt	10	10	AY.5	0.000206
ORF3a	99	A99P	Gct	Cct	10	10	AY.5	0.000206
ORF3a	99	A99S	Gct	Tct	10	10	AY.61	0.001048
ORF3a	99	A99V	gCt	gTt	10	10	B.1.1.28	0.003112
ORF3a	99	A99S	Gct	Tct	10	10	B.1.429	0.000235
ORF3a	99	A99S	Gct	Tct	10	10	B.1.617.1	0.00129
ORF3a	99	A99V	gCt	gTt	10	10	P.2	0.001866
ORF3a	99	A99S	Gct	Tct	9	9	AY.14	0.000792
ORF3a	99	A99G	gCt	gGt	9	9	AY.39.2	0.013867
ORF3a	99	A99V	gCt	gTt	9	9	B.1.1.214	0.000499
ORF3a	99	A99A	gcT	gcG	9	9	B.1.1.284	0.000967
ORF3a	99	A99V	gCt	gTt	9	9	B.1.1.420	0.009054
ORF3a	99	A99P	Gct	Cct	9	9	B.1.1.7	0.000008
ORF3a	99	A99del	GCT	---	9	9	B.1.177	0.000119
ORF3a	99	A99S	Gct	Tct	9	9	B.1.177.81	0.001704
ORF3a	99	A99V	gCt	gTt	9	9	B.1.232	0.004836
ORF3a	99	A99S	Gct	Tct	9	9	B.1.36	0.001313
ORF3a	99	A99V	gCt	gTt	8	8	AY.113	0.001139
ORF3a	99	A99S	Gct	Tct	8	8	AY.120.1	0.002568
ORF3a	99	A99S	Gct	Tct	8	8	AY.16	0.003037
ORF3a	99	A99S	Gct	Tct	8	8	AY.2	0.002849
ORF3a	99	A99T	Gct	Act	8	8	AY.20	0.000311
ORF3a	99	A99T	Gct	Act	8	8	AY.25	0.000048
ORF3a	99	A99D	gCt	gAt	8	8	AY.25	0.000048
ORF3a	99	A99V	gCt	gTt	8	8	AY.27	0.000518
ORF3a	99	A99V	gCt	gTt	8	8	AY.3.1	0.000682
ORF3a	99	A99V	gCt	gTt	8	8	AY.33	0.000534
ORF3a	99	A99V	gCt	gTt	8	8	AY.34	0.000776
ORF3a	99	A99D	gCt	gAt	8	8	AY.4	0.000012
ORF3a	99	A99S	Gct	Tct	8	8	AY.45	0.000973
ORF3a	99	A99V	gCt	gTt	8	8	AY.5.3	0.002699
ORF3a	99	A99F	GCt	TTt	8	8	AY.6	0.000329
ORF3a	99	A99S	Gct	Tct	8	8	AY.75	0.000448
ORF3a	99	A99V	gCt	gTt	8	8	AY.99.2	0.000737
ORF3a	99	A99T	Gct	Act	8	8	B.1.396	0.005646
ORF3a	99	A99T	Gct	Act	8	8	B.1.596	0.000697
ORF3a	99	A99V	gCt	gTt	8	8	B.1.621	0.000708
ORF3a	99	A99D	gCt	gAt	8	8	B.1.628	0.002819
ORF3a	99	A99V	gCt	gTt	8	8	B.1.637	0.000585
ORF3a	99	A99V	gCt	gTt	8	8	N.5	0.014134
ORF3a	99	A99S	Gct	Tct	8	8	P.1.14	0.000382
ORF3a	99	A99del2	gCT	g--	4	7	All	0.000001
ORF3a	99	A99del2	GCt	--t	3	7	All	0.000001
ORF3a	99	A99A	gcT	gcC	5	7	AY.25	0.00003
ORF3a	99	A99A	gcT	gcA	2	7	AY.25	0.000012
ORF3a	99	A99T	Gct	Act	7	7	AY.43	0.000031
ORF3a	99	A99A	gcT	gcC	5	7	AY.43	0.000022
ORF3a	99	A99A	gcT	gcA	1	7	AY.43	0.000004
ORF3a	99	A99A	gcT	gcG	1	7	AY.43	0.000004
ORF3a	99	A99T	Gct	Act	7	7	AY.44	0.000043
ORF3a	99	A99V	gCt	gTt	7	7	AY.69	0.001307
ORF3a	99	A99S	Gct	Tct	7	7	AY.84	0.003062
ORF3a	99	A99V	gCt	gTt	7	7	AY.9.2	0.000257
ORF3a	99	A99S	Gct	Tct	7	7	AY.98	0.000553
ORF3a	99	A99T	Gct	Act	7	7	B.1.1.279	0.007848
ORF3a	99	A99V	gCt	gTt	7	7	B.1.243	0.000487
ORF3a	99	A99V	gCt	gTt	7	7	B.1.3	0.018325
ORF3a	99	A99S	Gct	Tct	7	7	B.1.351.3	0.006135
ORF3a	99	A99V	gCt	gTt	7	7	B.1.609	0.003356
ORF3a	99	A99D	gCt	gAt	7	7	P.1	0.00011
ORF3a	99	A99V	gCt	gTt	7	7	Q.8	0.001154
ORF3a	99	A99T	Gct	Act	6	6	A.28	0.015873
ORF3a	99	A99T	Gct	Act	6	6	AY.1	0.002374
ORF3a	99	A99S	Gct	Tct	6	6	AY.100	0.000276
ORF3a	99	A99G	gCt	gGt	6	6	AY.103	0.000037
ORF3a	99	A99V	gCt	gTt	6	6	AY.23	0.000418
ORF3a	99	A99S	Gct	Tct	6	6	AY.36	0.000889
ORF3a	99	A99V	gCt	gTt	6	6	AY.39.1	0.000238
ORF3a	99	A99S	Gct	Tct	6	6	AY.4.2	0.00013
ORF3a	99	A99S	Gct	Tct	6	6	AY.4.2.1	0.000894
ORF3a	99	A99del	GCT	---	6	6	AY.43	0.000027
ORF3a	99	A99A	gcT	gcC	4	6	AY.98.1	0.000194
ORF3a	99	A99A	gcT	gcA	2	6	AY.98.1	0.000097
ORF3a	99	A99P	Gct	Cct	6	6	B.1	0.000055
ORF3a	99	A99V	gCt	gTt	6	6	B.1.1.189	0.009077
ORF3a	99	A99V	gCt	gTt	6	6	B.1.1.192	0.013857
ORF3a	99	A99S	Gct	Tct	6	6	B.1.1.216	0.005343
ORF3a	99	A99V	gCt	gTt	6	6	B.1.1.33	0.002525
ORF3a	99	A99S	Gct	Tct	6	6	B.1.234	0.000792
ORF3a	99	A99P	Gct	Cct	6	6	B.1.36.29	0.003104
ORF3a	99	A99S	Gct	Tct	6	6	B.1.427	0.000303
ORF3a	99	A99T	Gct	Act	6	6	B.1.429	0.000141
ORF3a	99	A99S	Gct	Tct	6	6	B.1.466.2	0.002347
ORF3a	99	A99S	Gct	Tct	6	6	B.1.525	0.000679
ORF3a	99	A99T	Gct	Act	6	6	B.1.575	0.00182
ORF3a	99	A99V	gCt	gTt	6	6	B.1.628	0.002114
ORF3a	99	A99V	gCt	gTt	6	6	C.36	0.005464
ORF3a	99	A99del	GCT	---	6	6	P.1	0.000095
ORF3a	99	A99S	Gct	Tct	6	6	Q.8	0.000989
ORF3a	99	A99V	gCt	gTt	6	6	R.1	0.00054
ORF3a	99	A99S	Gct	Tct	3	5		0.166667
ORF3a	99	A99S	GcT	TcA	2	5		0.111111
ORF3a	99	A99A	gcT	gcC	4	5	AY.39	0.000099
ORF3a	99	A99A	gcT	gcG	1	5	AY.39	0.000025
ORF3a	99	A99S	Gct	Tct	5	5	AY.4.5	0.000537
ORF3a	99	A99V	gCt	gTt	5	5	AY.42	0.000201
ORF3a	99	A99D	gCt	gAt	5	5	AY.45	0.000608
ORF3a	99	A99D	gCt	gAt	5	5	AY.46	0.00052
ORF3a	99	A99V	gCt	gTt	5	5	AY.51	0.004545
ORF3a	99	A99V	gCt	gTt	5	5	AY.54	0.000477
ORF3a	99	A99S	Gct	Tct	5	5	AY.6	0.000206
ORF3a	99	A99A	gcT	gcC	5	5	AY.61	0.000524
ORF3a	99	A99V	gCt	gTt	5	5	AY.61	0.000524
ORF3a	99	A99V	gCt	gTt	5	5	AY.73	0.003327
ORF3a	99	A99V	gCt	gTt	5	5	B.1.147	0.003779
ORF3a	99	A99V	gCt	gTt	5	5	B.1.177.56	0.003338
ORF3a	99	A99T	Gct	Act	5	5	B.1.221	0.000355
ORF3a	99	A99V	gCt	gTt	5	5	B.1.258	0.000333
ORF3a	99	A99S	Gct	Tct	5	5	B.1.258.11	0.001982
ORF3a	99	A99T	Gct	Act	5	5	B.1.351.2	0.001513
ORF3a	99	A99V	gCt	gTt	5	5	B.1.36	0.00073
ORF3a	99	A99del	GCT	---	5	5	B.1.525	0.000566
ORF3a	99	A99V	gCt	gTt	5	5	B.1.565	0.004052
ORF3a	99	A99S	Gct	Tct	5	5	B.1.596	0.000436
ORF3a	99	A99V	gCt	gTt	5	5	B.1.596	0.000436
ORF3a	99	A99V	gCt	gTt	5	5	B.1.617.1	0.000645
ORF3a	99	A99A	gcT	gcG	5	5	B.1.637	0.000365
ORF3a	99	A99V	gCt	gTt	3	5	B.1.91	0.006224
ORF3a	99	A99V	gCT	gTG	1	5	B.1.91	0.002075
ORF3a	99	A99V	gCT	gTA	1	5	B.1.91	0.002075
ORF3a	99	A99S	Gct	Tct	5	5	B.39	0.011655
ORF3a	99	A99S	Gct	Tct	5	5	C.36	0.004554
ORF3a	99	A99V	gCT	gTA	2	4		0.111111
ORF3a	99	A99V	gCt	gTt	2	4		0.111111
ORF3a	99	A99V	gCt	gTt	4	4	A.27	0.006623
ORF3a	99	A99V	gCt	gTt	4	4	AY.106	0.00134
ORF3a	99	A99V	gCt	gTt	4	4	AY.117	0.000338
ORF3a	99	A99V	gCt	gTt	4	4	AY.19	0.004561
ORF3a	99	A99S	Gct	Tct	4	4	AY.29.1	0.000882
ORF3a	99	A99A	gcT	gcC	4	4	AY.3	0.00004
ORF3a	99	A99F	GCt	TTt	4	4	AY.4	0.000006
ORF3a	99	A99D	gCt	gAt	4	4	AY.6	0.000165
ORF3a	99	A99S	Gct	Tct	4	4	AY.68	0.001095
ORF3a	99	A99S	Gct	Tct	4	4	AY.7.1	0.000451
ORF3a	99	A99S	Gct	Tct	4	4	AY.87	0.003331
ORF3a	99	A99V	gCt	gTt	4	4	AY.92	0.001149
ORF3a	99	A99S	Gct	Tct	4	4	AY.98.1	0.000194
ORF3a	99	A99V	gCt	gTt	4	4	AY.98.1	0.000194
ORF3a	99	A99A	gcT	gcC	2	4	B.1.1	0.000036
ORF3a	99	A99A	gcT	gcA	2	4	B.1.1	0.000036
ORF3a	99	A99S	Gct	Tct	4	4	B.1.1.218	0.030769
ORF3a	99	A99V	gCt	gTt	4	4	B.1.1.284	0.00043
ORF3a	99	A99S	Gct	Tct	4	4	B.1.1.291	0.00297
ORF3a	99	A99V	gCt	gTt	4	4	B.1.1.318	0.001207
ORF3a	99	A99V	gCt	gTt	4	4	B.1.1.371	0.041667
ORF3a	99	A99A	gcT	gcC	4	4	B.1.1.519	0.000159
ORF3a	99	A99F	GCt	TTt	4	4	B.1.1.519	0.000159
ORF3a	99	A99V	gCt	gTt	4	4	B.1.177.50	0.018779
ORF3a	99	A99T	Gct	Act	4	4	B.1.177.56	0.00267
ORF3a	99	A99V	gCt	gTt	4	4	B.1.177.81	0.000757
ORF3a	99	A99P	Gct	Cct	4	4	B.1.2	0.000035
ORF3a	99	A99S	Gct	Tct	4	4	B.1.438.1	0.000429
ORF3a	99	A99S	Gct	Tct	4	4	B.1.621	0.000354
ORF3a	99	A99S	Gct	Tct	4	4	B.1.9.5	0.022727
ORF3a	99	A99S	Gct	Tct	4	4	C.37	0.000464
ORF3a	99	A99del	GCT	---	4	4	P.1.15	0.000929
ORF3a	99	A99S	Gct	Tct	4	4	P.2	0.000747
ORF3a	99	A99V	gCt	gTt	3	3	A.23.1	0.002113
ORF3a	99	A99L	GCT	TTA	3	3	All	0.000001
ORF3a	99	A99V	gCt	gTt	3	3	AY.100	0.000138
ORF3a	99	A99T	Gct	Act	3	3	AY.102	0.00008
ORF3a	99	A99V	gCt	gTt	3	3	AY.120	0.000112
ORF3a	99	A99P	Gct	Cct	3	3	AY.120	0.000112
ORF3a	99	A99A	gcT	gcC	2	3	AY.20	0.000078
ORF3a	99	A99A	gcT	gcA	1	3	AY.20	0.000039
ORF3a	99	A99del	GCT	---	3	3	AY.23	0.000209
ORF3a	99	A99V	gCt	gTt	3	3	AY.23.1	0.001252
ORF3a	99	A99del	GCT	---	3	3	AY.25	0.000018
ORF3a	99	A99A	gcT	gcC	3	3	AY.26	0.000085
ORF3a	99	A99A	gcT	gcA	3	3	AY.29	0.000047
ORF3a	99	A99D	gCt	gAt	3	3	AY.3	0.00003
ORF3a	99	A99T	Gct	Act	3	3	AY.39	0.000074
ORF3a	99	A99S	Gct	Tct	3	3	AY.39.1	0.000119
ORF3a	99	A99P	Gct	Cct	3	3	AY.4	0.000005
ORF3a	99	A99V	gCt	gTt	3	3	AY.4.2.1	0.000447
ORF3a	99	A99S	Gct	Tct	3	3	AY.4.4	0.001227
ORF3a	99	A99del	GCT	---	3	3	AY.4.5	0.000322
ORF3a	99	A99P	Gct	Cct	3	3	AY.42	0.000121
ORF3a	99	A99P	Gct	Cct	3	3	AY.44	0.000018
ORF3a	99	A99S	Gct	Tct	3	3	AY.47	0.000093
ORF3a	99	A99T	Gct	Act	3	3	AY.6	0.000123
ORF3a	99	A99A	gcT	gcC	3	3	AY.67	0.001393
ORF3a	99	A99A	gcT	gcC	3	3	AY.75	0.000168
ORF3a	99	A99S	Gct	Tct	3	3	AY.9	0.000203
ORF3a	99	A99S	Gct	Tct	3	3	AY.91	0.002191
ORF3a	99	A99V	gCt	gTt	3	3	B	0.000383
ORF3a	99	A99S	Gct	Tct	3	3	B.1.1.10	0.003344
ORF3a	99	A99V	gCt	gTt	3	3	B.1.1.25	0.001706
ORF3a	99	A99A	gcT	gcC	3	3	B.1.1.39	0.001529
ORF3a	99	A99V	gCt	gTt	3	3	B.1.111	0.003525
ORF3a	99	A99S	Gct	Tct	3	3	B.1.160.25	0.033333
ORF3a	99	A99V	gCt	gTt	3	3	B.1.177.52	0.005272
ORF3a	99	A99S	Gct	Tct	3	3	B.1.177.60	0.000655
ORF3a	99	A99S	Gct	Tct	3	3	B.1.177.62	0.003576
ORF3a	99	A99V	gCt	gTt	3	3	B.1.177.73	0.001699
ORF3a	99	A99del1	gcT	gc-	3	3	B.1.177.82	0.001432
ORF3a	99	A99S	Gct	Tct	3	3	B.1.22	0.003953
ORF3a	99	A99V	gCt	gTt	3	3	B.1.221	0.000213
ORF3a	99	A99V	gCt	gTt	3	3	B.1.234	0.000396
ORF3a	99	A99A	gcT	gcA	2	3	B.1.258	0.000133
ORF3a	99	A99A	gcT	gcC	1	3	B.1.258	0.000067
ORF3a	99	A99A	gcT	gcC	3	3	B.1.258.14	0.002941
ORF3a	99	A99S	Gct	Tct	3	3	B.1.311	0.000824
ORF3a	99	A99del1	gcT	gc-	3	3	B.1.351	0.000089
ORF3a	99	A99T	Gct	Act	3	3	B.1.36	0.000438
ORF3a	99	A99S	Gct	Tct	3	3	B.1.36.16	0.004274
ORF3a	99	A99S	Gct	Tct	3	3	B.1.36.29	0.001552
ORF3a	99	A99V	gCt	gTt	3	3	B.1.378	0.020548
ORF3a	99	A99S	Gct	Tct	3	3	B.1.397	0.014563
ORF3a	99	A99S	Gct	Tct	3	3	B.1.420	0.03125
ORF3a	99	A99V	gCt	gTt	3	3	B.1.576	0.00272
ORF3a	99	A99del	GCT	---	3	3	B.1.621	0.000266
ORF3a	99	A99V	gCt	gTt	3	3	B.40	0.001093
ORF3a	99	A99S	Gct	Tct	3	3	C.31	0.053571
ORF3a	99	A99S	Gct	Tct	3	3	R.1	0.00027
ORF3a	99	A99F	GCt	TTt	2	2		0.111111
ORF3a	99	A99L	GCT	TTA	2	2		0.111111
ORF3a	99	A99A	gcT	gcA	2	2		0.111111
ORF3a	99	A99S	Gct	Tct	2	2	A.2.5.1	0.009615
ORF3a	99	A99S	Gct	Tct	2	2	A.23.1	0.001408
ORF3a	99	A99D	gCt	gAt	2	2	A.24	0.142857
ORF3a	99	A99E	gCT	gAA	2	2	All	0
ORF3a	99	A99I	GCt	ATt	2	2	All	0
ORF3a	99	A99A	gcT	gcA	2	2	AY.100	0.000092
ORF3a	99	A99D	gCt	gAt	2	2	AY.102	0.000053
ORF3a	99	A99T	Gct	Act	2	2	AY.104	0.003968
ORF3a	99	A99S	Gct	Tct	2	2	AY.106	0.00067
ORF3a	99	A99S	Gct	Tct	2	2	AY.108	0.002205
ORF3a	99	A99V	gCt	gTt	2	2	AY.116	0.000574
ORF3a	99	A99T	Gct	Act	2	2	AY.13	0.000322
ORF3a	99	A99V	gCt	gTt	2	2	AY.13	0.000322
ORF3a	99	A99S	Gct	Tct	2	2	AY.13	0.000322
ORF3a	99	A99T	Gct	Act	2	2	AY.14	0.000176
ORF3a	99	A99V	gCt	gTt	2	2	AY.16	0.000759
ORF3a	99	A99S	Gct	Tct	2	2	AY.16.1	0.00094
ORF3a	99	A99A	gcT	gcC	2	2	AY.16.1	0.00094
ORF3a	99	A99P	Gct	Cct	2	2	AY.26	0.000057
ORF3a	99	A99S	Gct	Tct	2	2	AY.35	0.000466
ORF3a	99	A99del	GCT	---	2	2	AY.4	0.000003
ORF3a	99	A99A	gcT	gcC	2	2	AY.4.2	0.000043
ORF3a	99	A99V	gCt	gTt	2	2	AY.4.5	0.000215
ORF3a	99	A99G	gCt	gGt	2	2	AY.42	0.00008
ORF3a	99	A99G	gCt	gGt	2	2	AY.45	0.000243
ORF3a	99	A99V	gCt	gTt	2	2	AY.45	0.000243
ORF3a	99	A99A	gcT	gcC	2	2	AY.46	0.000208
ORF3a	99	A99T	Gct	Act	2	2	AY.47	0.000062
ORF3a	99	A99G	gCt	gGt	2	2	AY.47	0.000062
ORF3a	99	A99S	Gct	Tct	2	2	AY.5.3	0.000675
ORF3a	99	A99S	Gct	Tct	2	2	AY.51	0.001818
ORF3a	99	A99del1	gcT	gc-	2	2	AY.52	0.001629
ORF3a	99	A99S	Gct	Tct	2	2	AY.63	0.000774
ORF3a	99	A99A	gcT	gcC	2	2	AY.7.1	0.000225
ORF3a	99	A99A	gcT	gcA	2	2	AY.70	0.000417
ORF3a	99	A99V	gCt	gTt	2	2	AY.70	0.000417
ORF3a	99	A99S	Gct	Tct	2	2	AY.71	0.00095
ORF3a	99	A99V	gCt	gTt	2	2	AY.75	0.000112
ORF3a	99	A99T	Gct	Act	2	2	AY.75	0.000112
ORF3a	99	A99A	gcT	gcC	2	2	AY.85	0.000854
ORF3a	99	A99V	gCt	gTt	2	2	AY.9	0.000135
ORF3a	99	A99V	gCt	gTt	2	2	AY.95	0.001522
ORF3a	99	A99S	Gct	Tct	2	2	AY.95	0.001522
ORF3a	99	A99V	gCt	gTt	2	2	B.1.1.1	0.000653
ORF3a	99	A99S	Gct	Tct	2	2	B.1.1.1	0.000653
ORF3a	99	A99V	gCt	gTt	2	2	B.1.1.163	0.015267
ORF3a	99	A99T	Gct	Act	2	2	B.1.1.216	0.001781
ORF3a	99	A99V	gCt	gTt	2	2	B.1.1.220	0.003717
ORF3a	99	A99S	Gct	Tct	2	2	B.1.1.277	0.001517
ORF3a	99	A99T	Gct	Act	2	2	B.1.1.311	0.000716
ORF3a	99	A99V	gCt	gTt	2	2	B.1.1.326	0.003521
ORF3a	99	A99G	gCt	gGt	1	2	B.1.1.33	0.000421
ORF3a	99	A99A	gcT	gcA	1	2	B.1.1.33	0.000421
ORF3a	99	A99A	gcT	gcG	1	2	B.1.1.33	0.000421
ORF3a	99	A99G	gCT	gGG	1	2	B.1.1.33	0.000421
ORF3a	99	A99V	gCt	gTt	2	2	B.1.1.50	0.001358
ORF3a	99	A99V	gCt	gTt	2	2	B.1.1.513	0.024691
ORF3a	99	A99T	Gct	Act	2	2	B.1.1.519	0.000079
ORF3a	99	A99P	Gct	Cct	2	2	B.1.1.519	0.000079
ORF3a	99	A99V	gCt	gTt	2	2	B.1.1.523	0.003125
ORF3a	99	A99I	GCt	ATt	2	2	B.1.1.7	0.000002
ORF3a	99	A99del2	gCT	g--	1	2	B.1.1.7	0.000001
ORF3a	99	A99del2	GCt	--t	1	2	B.1.1.7	0.000001
ORF3a	99	A99V	gCt	gTt	2	2	B.1.110.3	0.001437
ORF3a	99	A99del1	gcT	gc-	2	2	B.1.160	0.000062
ORF3a	99	A99A	gcT	gcC	2	2	B.1.160	0.000062
ORF3a	99	A99V	gCt	gTt	2	2	B.1.160.16	0.001859
ORF3a	99	A99T	Gct	Act	2	2	B.1.177	0.000026
ORF3a	99	A99V	gCt	gTt	2	2	B.1.177.12	0.000303
ORF3a	99	A99S	Gct	Tct	2	2	B.1.177.57	0.000562
ORF3a	99	A99G	gCt	gGt	2	2	B.1.177.60	0.000437
ORF3a	99	A99D	gCt	gAt	2	2	B.1.2	0.000018
ORF3a	99	A99S	Gct	Tct	2	2	B.1.240	0.000431
ORF3a	99	A99D	gCt	gAt	2	2	B.1.243	0.000139
ORF3a	99	A99S	Gct	Tct	2	2	B.1.243	0.000139
ORF3a	99	A99V	gCt	gTt	2	2	B.1.265	0.002541
ORF3a	99	A99V	gCt	gTt	2	2	B.1.279	0.001027
ORF3a	99	A99D	gCt	gAt	2	2	B.1.36	0.000292
ORF3a	99	A99S	Gct	Tct	2	2	B.1.36.8	0.002
ORF3a	99	A99V	gCt	gTt	2	2	B.1.367	0.001585
ORF3a	99	A99V	gCt	gTt	2	2	B.1.369	0.00057
ORF3a	99	A99S	Gct	Tct	2	2	B.1.393	0.057143
ORF3a	99	A99S	Gct	Tct	2	2	B.1.395	0.014085
ORF3a	99	A99A	gcT	gcG	1	2	B.1.429	0.000024
ORF3a	99	A99A	gcT	gcA	1	2	B.1.429	0.000024
ORF3a	99	A99S	Gct	Tct	2	2	B.1.438	0.013072
ORF3a	99	A99S	Gct	Tct	2	2	B.1.456	0.006536
ORF3a	99	A99S	Gct	Tct	2	2	B.1.503	0.004975
ORF3a	99	A99S	Gct	Tct	2	2	B.1.551	0.002581
ORF3a	99	A99V	gCt	gTt	2	2	B.1.564	0.000852
ORF3a	99	A99V	gCt	gTt	2	2	B.1.564.1	0.003155
ORF3a	99	A99V	gCt	gTt	2	2	B.1.575	0.000607
ORF3a	99	A99V	gCt	gTt	2	2	B.1.588	0.00182
ORF3a	99	A99A	gcT	gcC	1	2	B.1.596	0.000087
ORF3a	99	A99A	gcT	gcA	1	2	B.1.596	0.000087
ORF3a	99	A99V	gCt	gTt	2	2	B.1.597	0.009259
ORF3a	99	A99del	GCT	---	2	2	B.1.617.2	0.000008
ORF3a	99	A99P	Gct	Cct	2	2	B.1.617.2	0.000008
ORF3a	99	A99F	GCt	TTt	2	2	B.1.617.2	0.000008
ORF3a	99	A99T	Gct	Act	2	2	B.1.619.1	0.001283
ORF3a	99	A99V	gCt	gTt	2	2	B.1.625	0.004706
ORF3a	99	A99T	Gct	Act	2	2	B.1.637	0.000146
ORF3a	99	A99S	Gct	Tct	1	2	B.1.91	0.002075
ORF3a	99	A99S	GcT	TcA	1	2	B.1.91	0.002075
ORF3a	99	A99G	gCT	gGG	1	2	B.1.91	0.002075
ORF3a	99	A99G	gCt	gGt	1	2	B.1.91	0.002075
ORF3a	99	A99A	gcT	gcA	2	2	C.36.3	0.001134
ORF3a	99	A99V	gCt	gTt	2	2	D.2	0.00015
ORF3a	99	A99T	Gct	Act	2	2	P.1	0.000032
ORF3a	99	A99V	gCt	gTt	2	2	P.1.13	0.001797
ORF3a	99	A99V	gCt	gTt	2	2	P.1.17	0.000324
ORF3a	99	A99S	Gct	Tct	2	2	P.1.17	0.000324
ORF3a	99	A99C	GCt	TGt	1	1		0.055556
ORF3a	99	A99G	gCt	gGt	1	1		0.055556
ORF3a	99	A99S	Gct	Tct	1	1	A	0.000387
ORF3a	99	A99del	GCT	---	1	1	A	0.000387
ORF3a	99	A99S	Gct	Tct	1	1	A.1	0.000282
ORF3a	99	A99F	GCt	TTt	1	1	A.21	0.00277
ORF3a	99	A99V	gCt	gTt	1	1	A.25	0.018182
ORF3a	99	A99V	gCt	gTt	1	1	A.5	0.001923
ORF3a	99	A99V	gCt	gTt	1	1	AA.4	0.009091
ORF3a	99	A99V	gCt	gTt	1	1	AB.1	0.008197
ORF3a	99	A99del	GCT	---	1	1	AD.2	0.000219
ORF3a	99	A99V	gCt	gTt	1	1	AE.1	0.011364
ORF3a	99	A99S	Gct	Tct	1	1	AE.8	0.000489
ORF3a	99	A99A	gcT	gcC	1	1	AE.8	0.000489
ORF3a	99	A99del	GCT	---	1	1	AH.3	0.003802
ORF3a	99	A99Y	GCt	TAt	1	1	All	0
ORF3a	99	A99C	GCt	TGt	1	1	All	0
ORF3a	99	A99V	gCt	gTt	1	1	AT.1	0.005128
ORF3a	99	A99V	gCt	gTt	1	1	AU.3	0.00211
ORF3a	99	A99del	GCT	---	1	1	AV.1	0.005051
ORF3a	99	A99del	GCT	---	1	1	AY.100	0.000046
ORF3a	99	A99V	gCt	gTt	1	1	AY.105	0.000643
ORF3a	99	A99T	Gct	Act	1	1	AY.106	0.000335
ORF3a	99	A99del	GCT	---	1	1	AY.108	0.001103
ORF3a	99	A99A	gcT	gcC	1	1	AY.109	0.00074
ORF3a	99	A99V	gCt	gTt	1	1	AY.109	0.00074
ORF3a	99	A99V	gCt	gTt	1	1	AY.110	0.000113
ORF3a	99	A99del	GCT	---	1	1	AY.111	0.000183
ORF3a	99	A99S	Gct	Tct	1	1	AY.113	0.000142
ORF3a	99	A99D	gCt	gAt	1	1	AY.113	0.000142
ORF3a	99	A99del	GCT	---	1	1	AY.113	0.000142
ORF3a	99	A99V	gCt	gTt	1	1	AY.114	0.000231
ORF3a	99	A99T	Gct	Act	1	1	AY.117	0.000085
ORF3a	99	A99P	Gct	Cct	1	1	AY.119	0.000035
ORF3a	99	A99S	Gct	Tct	1	1	AY.12	0.000316
ORF3a	99	A99A	gcT	gcC	1	1	AY.120.2	0.001285
ORF3a	99	A99G	gCt	gGt	1	1	AY.121	0.000135
ORF3a	99	A99A	gcT	gcC	1	1	AY.13	0.000161
ORF3a	99	A99V	gCt	gTt	1	1	AY.14	0.000088
ORF3a	99	A99T	Gct	Act	1	1	AY.16	0.00038
ORF3a	99	A99V	gCt	gTt	1	1	AY.16.1	0.00047
ORF3a	99	A99del	GCT	---	1	1	AY.20	0.000039
ORF3a	99	A99D	gCt	gAt	1	1	AY.20	0.000039
ORF3a	99	A99G	gCt	gGt	1	1	AY.20	0.000039
ORF3a	99	A99A	gcT	gcC	1	1	AY.23	0.00007
ORF3a	99	A99S	Gct	Tct	1	1	AY.24	0.000431
ORF3a	99	A99P	Gct	Cct	1	1	AY.25	0.000006
ORF3a	99	A99del	GCT	---	1	1	AY.29	0.000016
ORF3a	99	A99S	Gct	Tct	1	1	AY.3.1	0.000085
ORF3a	99	A99S	Gct	Tct	1	1	AY.30	0.000396
ORF3a	99	A99A	gcT	gcC	1	1	AY.30	0.000396
ORF3a	99	A99S	Gct	Tct	1	1	AY.32	0.000532
ORF3a	99	A99V	gCt	gTt	1	1	AY.32	0.000532
ORF3a	99	A99del1	gcT	gc-	1	1	AY.33	0.000067
ORF3a	99	A99A	gcT	gcC	1	1	AY.33	0.000067
ORF3a	99	A99S	Gct	Tct	1	1	AY.34	0.000097
ORF3a	99	A99del	GCT	---	1	1	AY.34.1	0.00051
ORF3a	99	A99V	gCt	gTt	1	1	AY.35	0.000233
ORF3a	99	A99del	GCT	---	1	1	AY.35	0.000233
ORF3a	99	A99A	gcT	gcC	1	1	AY.35	0.000233
ORF3a	99	A99D	gCt	gAt	1	1	AY.38	0.000499
ORF3a	99	A99del	GCT	---	1	1	AY.39	0.000025
ORF3a	99	A99D	gCt	gAt	1	1	AY.39	0.000025
ORF3a	99	A99A	gcT	gcC	1	1	AY.39.1	0.00004
ORF3a	99	A99T	Gct	Act	1	1	AY.39.1	0.00004
ORF3a	99	A99D	gCt	gAt	1	1	AY.39.1	0.00004
ORF3a	99	A99V	gCt	gTt	1	1	AY.4.1	0.000737
ORF3a	99	A99D	gCt	gAt	1	1	AY.4.2	0.000022
ORF3a	99	A99V	gCt	gTt	1	1	AY.4.3	0.000842
ORF3a	99	A99D	gCt	gAt	1	1	AY.4.5	0.000107
ORF3a	99	A99A	gcT	gcA	1	1	AY.4.5	0.000107
ORF3a	99	A99V	gCt	gTt	1	1	AY.40	0.000964
ORF3a	99	A99S	Gct	Tct	1	1	AY.41	0.000294
ORF3a	99	A99T	Gct	Act	1	1	AY.42	0.00004
ORF3a	99	A99P	Gct	Cct	1	1	AY.43	0.000004
ORF3a	99	A99del2	GCt	--t	1	1	AY.43	0.000004
ORF3a	99	A99T	Gct	Act	1	1	AY.45	0.000122
ORF3a	99	A99G	gCt	gGt	1	1	AY.46.1	0.001027
ORF3a	99	A99S	Gct	Tct	1	1	AY.46.2	0.000635
ORF3a	99	A99V	gCt	gTt	1	1	AY.46.6	0.000072
ORF3a	99	A99D	gCt	gAt	1	1	AY.47	0.000031
ORF3a	99	A99A	gcT	gcC	1	1	AY.47	0.000031
ORF3a	99	A99A	gcT	gcC	1	1	AY.48	0.000465
ORF3a	99	A99V	gCt	gTt	1	1	AY.48	0.000465
ORF3a	99	A99A	gcT	gcC	1	1	AY.5	0.000021
ORF3a	99	A99T	Gct	Act	1	1	AY.5	0.000021
ORF3a	99	A99T	Gct	Act	1	1	AY.5.3	0.000337
ORF3a	99	A99del	GCT	---	1	1	AY.52	0.000814
ORF3a	99	A99S	Gct	Tct	1	1	AY.52	0.000814
ORF3a	99	A99V	gCt	gTt	1	1	AY.53	0.000288
ORF3a	99	A99S	Gct	Tct	1	1	AY.55	0.000917
ORF3a	99	A99A	gcT	gcA	1	1	AY.55	0.000917
ORF3a	99	A99T	Gct	Act	1	1	AY.58	0.000907
ORF3a	99	A99A	gcT	gcC	1	1	AY.59	0.00053
ORF3a	99	A99V	gCt	gTt	1	1	AY.59	0.00053
ORF3a	99	A99V	gCt	gTt	1	1	AY.62	0.000436
ORF3a	99	A99P	Gct	Cct	1	1	AY.62	0.000436
ORF3a	99	A99S	Gct	Tct	1	1	AY.62	0.000436
ORF3a	99	A99V	gCt	gTt	1	1	AY.63	0.000387
ORF3a	99	A99V	gCt	gTt	1	1	AY.65	0.000533
ORF3a	99	A99del	GCT	---	1	1	AY.68	0.000274
ORF3a	99	A99P	Gct	Cct	1	1	AY.68	0.000274
ORF3a	99	A99T	Gct	Act	1	1	AY.73	0.000665
ORF3a	99	A99S	Gct	Tct	1	1	AY.74	0.000116
ORF3a	99	A99S	Gct	Tct	1	1	AY.75.1	0.00018
ORF3a	99	A99V	gCt	gTt	1	1	AY.75.1	0.00018
ORF3a	99	A99V	gCt	gTt	1	1	AY.77	0.001127
ORF3a	99	A99T	Gct	Act	1	1	AY.77	0.001127
ORF3a	99	A99S	Gct	Tct	1	1	AY.79	0.001211
ORF3a	99	A99V	gCt	gTt	1	1	AY.8	0.000606
ORF3a	99	A99S	Gct	Tct	1	1	AY.82	0.001357
ORF3a	99	A99V	gCt	gTt	1	1	AY.89	0.004902
ORF3a	99	A99A	gcT	gcC	1	1	AY.9	0.000068
ORF3a	99	A99T	Gct	Act	1	1	AY.9	0.000068
ORF3a	99	A99T	Gct	Act	1	1	AY.9.1	0.000084
ORF3a	99	A99F	GCt	TTt	1	1	AY.9.2	0.000037
ORF3a	99	A99A	gcT	gcC	1	1	AY.93	0.000273
ORF3a	99	A99S	Gct	Tct	1	1	AY.93	0.000273
ORF3a	99	A99F	GCt	TTt	1	1	AY.94	0.000443
ORF3a	99	A99S	Gct	Tct	1	1	AY.94	0.000443
ORF3a	99	A99A	gcT	gcC	1	1	AY.98	0.000079
ORF3a	99	A99T	Gct	Act	1	1	AY.98.1	0.000048
ORF3a	99	A99S	Gct	Tct	1	1	AY.99	0.001049
ORF3a	99	A99T	Gct	Act	1	1	AY.99.2	0.000092
ORF3a	99	A99S	Gct	Tct	1	1	AY.99.2	0.000092
ORF3a	99	A99S	Gct	Tct	1	1	B	0.000128
ORF3a	99	A99del	GCT	---	1	1	B	0.000128
ORF3a	99	A99del2	GCt	--t	1	1	B.1	0.000009
ORF3a	99	A99del	GCT	---	1	1	B.1.1	0.000018
ORF3a	99	A99P	Gct	Cct	1	1	B.1.1	0.000018
ORF3a	99	A99D	gCt	gAt	1	1	B.1.1	0.000018
ORF3a	99	A99V	gCt	gTt	1	1	B.1.1.10	0.001115
ORF3a	99	A99T	Gct	Act	1	1	B.1.1.101	0.01
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.135	0.004695
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.161	0.003534
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.186	0.003436
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.192	0.002309
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.194	0.00495
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.207	0.001182
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.214	0.000055
ORF3a	99	A99T	Gct	Act	1	1	B.1.1.222	0.000204
ORF3a	99	A99V	gCt	gTt	1	1	B.1.1.239	0.032258
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.243	0.004082
ORF3a	99	A99V	gCt	gTt	1	1	B.1.1.256	0.013699
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.258	0.003257
ORF3a	99	A99T	Gct	Act	1	1	B.1.1.258	0.003257
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.263	0.001558
ORF3a	99	A99E	gCT	gAA	1	1	B.1.1.265	0.003155
ORF3a	99	A99V	gCt	gTt	1	1	B.1.1.265	0.003155
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.279	0.001121
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.28	0.000311
ORF3a	99	A99D	gCt	gAt	1	1	B.1.1.28	0.000311
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.282	0.011628
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.284	0.000107
ORF3a	99	A99V	gCt	gTt	1	1	B.1.1.305	0.003861
ORF3a	99	A99A	gcT	gcC	1	1	B.1.1.311	0.000358
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.312	0.001912
ORF3a	99	A99del	GCT	---	1	1	B.1.1.315	0.008475
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.317	0.000412
ORF3a	99	A99A	gcT	gcA	1	1	B.1.1.326	0.001761
ORF3a	99	A99V	gCt	gTt	1	1	B.1.1.344	0.010753
ORF3a	99	A99V	gCt	gTt	1	1	B.1.1.362	0.005618
ORF3a	99	A99V	gCt	gTt	1	1	B.1.1.368	0.003086
ORF3a	99	A99V	gCt	gTt	1	1	B.1.1.369	0.000446
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.37	0.000193
ORF3a	99	A99V	gCt	gTt	1	1	B.1.1.39	0.00051
ORF3a	99	A99A	gcT	gcC	1	1	B.1.1.397	0.002252
ORF3a	99	A99V	gCt	gTt	1	1	B.1.1.398	0.003226
ORF3a	99	A99del	GCT	---	1	1	B.1.1.409	0.002833
ORF3a	99	A99V	gCt	gTt	1	1	B.1.1.413	0.006897
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.416	0.000905
ORF3a	99	A99V	gCt	gTt	1	1	B.1.1.416	0.000905
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.419	0.007407
ORF3a	99	A99del	GCT	---	1	1	B.1.1.420	0.001006
ORF3a	99	A99T	Gct	Act	1	1	B.1.1.434	0.000349
ORF3a	99	A99V	gCt	gTt	1	1	B.1.1.435	0.034483
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.46	0.004367
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.51	0.001718
ORF3a	99	A99D	gCt	gAt	1	1	B.1.1.519	0.00004
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.526	0.003546
ORF3a	99	A99E	gCT	gAA	1	1	B.1.1.7	0.000001
ORF3a	99	A99G	gCt	gGt	1	1	B.1.1.7	0.000001
ORF3a	99	A99S	Gct	Tct	1	1	B.1.1.71	0.006061
ORF3a	99	A99V	gCt	gTt	1	1	B.1.1.93	0.025641
ORF3a	99	A99V	gCt	gTt	1	1	B.1.112	0.005181
ORF3a	99	A99V	gCt	gTt	1	1	B.1.118	0.006711
ORF3a	99	A99T	Gct	Act	1	1	B.1.126	0.001276
ORF3a	99	A99V	gCt	gTt	1	1	B.1.139	0.000733
ORF3a	99	A99S	Gct	Tct	1	1	B.1.139	0.000733
ORF3a	99	A99del	GCT	---	1	1	B.1.140	0.018868
ORF3a	99	A99S	Gct	Tct	1	1	B.1.147	0.000756
ORF3a	99	A99S	Gct	Tct	1	1	B.1.157	0.002985
ORF3a	99	A99del	GCT	---	1	1	B.1.157	0.002985
ORF3a	99	A99T	Gct	Act	1	1	B.1.160	0.000031
ORF3a	99	A99del	GCT	---	1	1	B.1.160	0.000031
ORF3a	99	A99del2	gCT	g--	1	1	B.1.160.23	0.004831
ORF3a	99	A99S	Gct	Tct	1	1	B.1.161	0.017241
ORF3a	99	A99S	Gct	Tct	1	1	B.1.170	0.00431
ORF3a	99	A99del2	gCT	g--	1	1	B.1.177	0.000013
ORF3a	99	A99G	gCt	gGt	1	1	B.1.177	0.000013
ORF3a	99	A99P	Gct	Cct	1	1	B.1.177	0.000013
ORF3a	99	A99A	gcT	gcA	1	1	B.1.177	0.000013
ORF3a	99	A99D	gCt	gAt	1	1	B.1.177	0.000013
ORF3a	99	A99V	gCt	gTt	1	1	B.1.177.10	0.000878
ORF3a	99	A99S	Gct	Tct	1	1	B.1.177.21	0.000076
ORF3a	99	A99V	gCt	gTt	1	1	B.1.177.32	0.00135
ORF3a	99	A99A	gcT	gcC	1	1	B.1.177.32	0.00135
ORF3a	99	A99D	gCt	gAt	1	1	B.1.177.33	0.001645
ORF3a	99	A99del	GCT	---	1	1	B.1.177.51	0.004566
ORF3a	99	A99S	Gct	Tct	1	1	B.1.177.56	0.000668
ORF3a	99	A99V	gCt	gTt	1	1	B.1.177.58	0.001332
ORF3a	99	A99del1	gcT	gc-	1	1	B.1.177.6	0.000977
ORF3a	99	A99del	GCT	---	1	1	B.1.177.6	0.000977
ORF3a	99	A99del	GCT	---	1	1	B.1.177.62	0.001192
ORF3a	99	A99F	GCt	TTt	1	1	B.1.177.7	0.000165
ORF3a	99	A99S	Gct	Tct	1	1	B.1.177.7	0.000165
ORF3a	99	A99S	Gct	Tct	1	1	B.1.177.73	0.000566
ORF3a	99	A99S	Gct	Tct	1	1	B.1.177.75	0.001041
ORF3a	99	A99S	Gct	Tct	1	1	B.1.177.79	0.002342
ORF3a	99	A99S	Gct	Tct	1	1	B.1.177.82	0.000477
ORF3a	99	A99V	gCt	gTt	1	1	B.1.177.87	0.000728
ORF3a	99	A99V	gCt	gTt	1	1	B.1.199	0.004132
ORF3a	99	A99F	GCt	TTt	1	1	B.1.2	0.000009
ORF3a	99	A99S	Gct	Tct	1	1	B.1.206	0.000816
ORF3a	99	A99S	Gct	Tct	1	1	B.1.210	0.002132
ORF3a	99	A99A	gcT	gcC	1	1	B.1.214	0.003663
ORF3a	99	A99S	Gct	Tct	1	1	B.1.222	0.001692
ORF3a	99	A99A	gcT	gcA	1	1	B.1.223	0.002778
ORF3a	99	A99A	gcT	gcC	1	1	B.1.234	0.000132
ORF3a	99	A99V	gCt	gTt	1	1	B.1.239	0.001221
ORF3a	99	A99S	Gct	Tct	1	1	B.1.241	0.000812
ORF3a	99	A99A	gcT	gcC	1	1	B.1.243	0.00007
ORF3a	99	A99S	Gct	Tct	1	1	B.1.250	0.014493
ORF3a	99	A99G	gCt	gGt	1	1	B.1.258	0.000067
ORF3a	99	A99T	Gct	Act	1	1	B.1.258	0.000067
ORF3a	99	A99V	gCt	gTt	1	1	B.1.258.14	0.00098
ORF3a	99	A99A	gcT	gcC	1	1	B.1.258.22	0.002667
ORF3a	99	A99V	gCt	gTt	1	1	B.1.282	0.014925
ORF3a	99	A99A	gcT	gcA	1	1	B.1.285	0.090909
ORF3a	99	A99P	Gct	Cct	1	1	B.1.314	0.007519
ORF3a	99	A99V	gCt	gTt	1	1	B.1.324	0.001605
ORF3a	99	A99V	gCt	gTt	1	1	B.1.333	0.010526
ORF3a	99	A99V	gCt	gTt	1	1	B.1.336	0.002439
ORF3a	99	A99T	Gct	Act	1	1	B.1.351	0.00003
ORF3a	99	A99A	gcT	gcC	1	1	B.1.351	0.00003
ORF3a	99	A99P	Gct	Cct	1	1	B.1.36	0.000146
ORF3a	99	A99del1	gcT	gc-	1	1	B.1.36.1	0.00114
ORF3a	99	A99V	gCt	gTt	1	1	B.1.36.10	0.004785
ORF3a	99	A99V	gCt	gTt	1	1	B.1.36.17	0.000494
ORF3a	99	A99V	gCt	gTt	1	1	B.1.36.18	0.00042
ORF3a	99	A99V	gCt	gTt	1	1	B.1.36.22	0.001208
ORF3a	99	A99A	gcT	gcA	1	1	B.1.36.29	0.000517
ORF3a	99	A99V	gCt	gTt	1	1	B.1.36.29	0.000517
ORF3a	99	A99del2	gCT	g--	1	1	B.1.36.38	0.001642
ORF3a	99	A99P	Gct	Cct	1	1	B.1.36.39	0.002217
ORF3a	99	A99V	gCt	gTt	1	1	B.1.36.8	0.001
ORF3a	99	A99S	Gct	Tct	1	1	B.1.361	0.001289
ORF3a	99	A99del	GCT	---	1	1	B.1.362	0.001541
ORF3a	99	A99T	Gct	Act	1	1	B.1.362	0.001541
ORF3a	99	A99S	Gct	Tct	1	1	B.1.367	0.000792
ORF3a	99	A99S	Gct	Tct	1	1	B.1.380	0.006623
ORF3a	99	A99T	Gct	Act	1	1	B.1.399	0.001934
ORF3a	99	A99V	gCt	gTt	1	1	B.1.400	0.000429
ORF3a	99	A99A	gcT	gcC	1	1	B.1.400	0.000429
ORF3a	99	A99S	Gct	Tct	1	1	B.1.404	0.001302
ORF3a	99	A99S	Gct	Tct	1	1	B.1.408	0.00369
ORF3a	99	A99del	GCT	---	1	1	B.1.416.1	0.001563
ORF3a	99	A99V	gCt	gTt	1	1	B.1.417	0.028571
ORF3a	99	A99S	Gct	Tct	1	1	B.1.428	0.00102
ORF3a	99	A99G	gCt	gGt	1	1	B.1.429	0.000024
ORF3a	99	A99A	gcT	gcC	1	1	B.1.438.1	0.000107
ORF3a	99	A99P	Gct	Cct	1	1	B.1.452	0.013699
ORF3a	99	A99T	Gct	Act	1	1	B.1.460	0.017857
ORF3a	99	A99V	gCt	gTt	1	1	B.1.466.2	0.000391
ORF3a	99	A99V	gCt	gTt	1	1	B.1.470	0.001404
ORF3a	99	A99V	gCt	gTt	1	1	B.1.473	0.019231
ORF3a	99	A99T	Gct	Act	1	1	B.1.483	0.111111
ORF3a	99	A99V	gCt	gTt	1	1	B.1.491	0.052632
ORF3a	99	A99V	gCt	gTt	1	1	B.1.492	0.007042
ORF3a	99	A99S	Gct	Tct	1	1	B.1.497	0.000315
ORF3a	99	A99A	gcT	gcC	1	1	B.1.517	0.000427
ORF3a	99	A99S	Gct	Tct	1	1	B.1.520	0.021739
ORF3a	99	A99V	gCt	gTt	1	1	B.1.525	0.000113
ORF3a	99	A99A	gcT	gcA	1	1	B.1.526	0.000024
ORF3a	99	A99T	Gct	Act	1	1	B.1.526	0.000024
ORF3a	99	A99V	gCt	gTt	1	1	B.1.561	0.000397
ORF3a	99	A99A	gcT	gcC	1	1	B.1.564	0.000426
ORF3a	99	A99S	Gct	Tct	1	1	B.1.565	0.00081
ORF3a	99	A99S	Gct	Tct	1	1	B.1.576	0.000907
ORF3a	99	A99V	gCt	gTt	1	1	B.1.582	0.000491
ORF3a	99	A99del	GCT	---	1	1	B.1.596	0.000087
ORF3a	99	A99S	Gct	Tct	1	1	B.1.600	0.005848
ORF3a	99	A99T	Gct	Act	1	1	B.1.617.1	0.000129
ORF3a	99	A99del	GCT	---	1	1	B.1.617.1	0.000129
ORF3a	99	A99G	gCt	gGt	1	1	B.1.617.2	0.000004
ORF3a	99	A99del1	gcT	gc-	1	1	B.1.617.2	0.000004
ORF3a	99	A99A	gcT	gcA	1	1	B.1.621	0.000089
ORF3a	99	A99S	Gct	Tct	1	1	B.1.621.1	0.000506
ORF3a	99	A99V	gCt	gTt	1	1	B.1.621.1	0.000506
ORF3a	99	A99A	gcT	gcC	1	1	B.1.623	0.000536
ORF3a	99	A99V	gCt	gTt	1	1	B.1.631	0.003367
ORF3a	99	A99S	Gct	Tct	1	1	B.1.635	0.017544
ORF3a	99	A99del	GCT	---	1	1	B.1.638	0.052632
ORF3a	99	A99S	Gct	Tct	1	1	B.1.9.3	0.038462
ORF3a	99	A99V	gCt	gTt	1	1	B.1.9.5	0.005682
ORF3a	99	A99A	gcT	gcA	1	1	B.1.91	0.002075
ORF3a	99	A99F	GCt	TTt	1	1	B.1.91	0.002075
ORF3a	99	A99L	GCT	TTA	1	1	B.1.91	0.002075
ORF3a	99	A99S	Gct	Tct	1	1	B.3	0.000831
ORF3a	99	A99P	Gct	Cct	1	1	B.39	0.002331
ORF3a	99	A99S	Gct	Tct	1	1	B.6.6	0.000889
ORF3a	99	A99V	gCt	gTt	1	1	C.16	0.00106
ORF3a	99	A99S	Gct	Tct	1	1	C.27	0.018519
ORF3a	99	A99S	Gct	Tct	1	1	C.35	0.000774
ORF3a	99	A99Y	GCt	TAt	1	1	C.37	0.000116
ORF3a	99	A99D	gCt	gAt	1	1	C.37	0.000116
ORF3a	99	A99A	gcT	gcC	1	1	C.37	0.000116
ORF3a	99	A99del	GCT	---	1	1	C.37	0.000116
ORF3a	99	A99S	Gct	Tct	1	1	C.37.1	0.002618
ORF3a	99	A99T	Gct	Act	1	1	D.2	0.000075
ORF3a	99	A99S	Gct	Tct	1	1	D.2	0.000075
ORF3a	99	A99T	Gct	Act	1	1	N.3	0.005814
ORF3a	99	A99F	GCt	TTt	1	1	P.1	0.000016
ORF3a	99	A99T	Gct	Act	1	1	P.1.1	0.000318
ORF3a	99	A99S	Gct	Tct	1	1	P.1.1	0.000318
ORF3a	99	A99A	gcT	gcG	1	1	P.1.1	0.000318
ORF3a	99	A99S	Gct	Tct	1	1	P.1.10	0.000269
ORF3a	99	A99V	gCt	gTt	1	1	P.1.12	0.000484
ORF3a	99	A99A	gcT	gcG	1	1	P.1.14	0.000048
ORF3a	99	A99S	Gct	Tct	1	1	P.1.15	0.000232
ORF3a	99	A99S	Gct	Tct	1	1	P.1.7	0.000319
ORF3a	99	A99D	gCt	gAt	1	1	P.2	0.000187
ORF3a	99	A99A	gcT	gcC	1	1	P.2	0.000187
ORF3a	99	A99D	gCt	gAt	1	1	P.3	0.001595
ORF3a	99	A99T	Gct	Act	1	1	P.6	0.003145
ORF3a	99	A99T	Gct	Act	1	1	Q.1	0.000126
ORF3a	99	A99V	gCt	gTt	1	1	Q.3	0.000145
ORF3a	99	A99del	GCT	---	1	1	Q.4	0.000455
ORF3a	99	A99S	Gct	Tct	1	1	Q.7	0.001111
ORF3a	99	A99D	gCt	gAt	1	1	Q.8	0.000165
ORF3a	99	A99del1	gcT	gc-	1	1	R.1	0.00009
ORF3a	99	A99T	Gct	Act	1	1	R.1	0.00009
ORF3a	99	A99del	GCT	---	1	1	U.3	0.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.