CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 99 | A99V | nonsyn | gCt | gTt | 6898 | 6894 | 0.99942 | 25687-25689 | |
ORF3a | 99 | A99V | nonsyn | gCT | gTA | 6898 | 3 | 0.000434909 | 25687-25689 | |
ORF3a | 99 | A99V | nonsyn | gCT | gTG | 6898 | 1 | 0.00014497 | 25687-25689 | |
ORF3a | 99 | A99S | nonsyn | Gct | Tct | 5307 | 5304 | 0.999435 | 25687-25689 | |
ORF3a | 99 | A99S | nonsyn | GcT | TcA | 5307 | 3 | 0.000565291 | 25687-25689 | |
ORF3a | 99 | A99T | nonsyn | Gct | Act | 3050 | 3050 | 1 | 25687-25689 | |
ORF3a | 99 | A99A | syn | gcT | gcC | 1866 | 1455 | 0.779743 | 25687-25689 | |
ORF3a | 99 | A99A | syn | gcT | gcA | 1866 | 303 | 0.162379 | 25687-25689 | |
ORF3a | 99 | A99A | syn | gcT | gcG | 1866 | 108 | 0.0578778 | 25687-25689 | |
ORF3a | 99 | A99D | nonsyn | gCt | gAt | 418 | 418 | 1 | 25687-25689 | |
ORF3a | 99 | A99P | nonsyn | Gct | Cct | 177 | 177 | 1 | 25687-25689 | |
ORF3a | 99 | A99del | del | GCT | --- | 127 | 127 | 1 | 25687-25689 | |
ORF3a | 99 | A99del1 | del | gcT | gc- | 82 | 81 | 0.987805 | 25687-25689 | |
ORF3a | 99 | A99del1 | del | GCt | -Tt | 82 | 1 | 0.0121951 | 25687-25689 | |
ORF3a | 99 | A99G | nonsyn | gCt | gGt | 81 | 79 | 0.975309 | 25687-25689 | |
ORF3a | 99 | A99G | nonsyn | gCT | gGG | 81 | 2 | 0.0246914 | 25687-25689 | |
ORF3a | 99 | A99F | nonsyn | GCt | TTt | 27 | 27 | 1 | 25687-25689 | |
ORF3a | 99 | A99del2 | del | gCT | g-- | 7 | 4 | 0.571429 | 25687-25689 | |
ORF3a | 99 | A99del2 | del | GCt | --t | 7 | 3 | 0.428571 | 25687-25689 | |
ORF3a | 99 | A99L | nonsyn | GCT | TTA | 3 | 3 | 1 | 25687-25689 | |
ORF3a | 99 | A99I | nonsyn | GCt | ATt | 2 | 2 | 1 | 25687-25689 | |
ORF3a | 99 | A99E | nonsyn | gCT | gAA | 2 | 2 | 1 | 25687-25689 | |
ORF3a | 99 | A99C | nonsyn | GCt | TGt | 1 | 1 | 1 | 25687-25689 | |
ORF3a | 99 | A99Y | nonsyn | GCt | TAt | 1 | 1 | 1 | 25687-25689 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 99 | A99V | gCt | gTt | 6894 | 6898 | All | 0.001319 |
ORF3a | 99 | A99V | gCT | gTA | 3 | 6898 | All | 0.000001 |
ORF3a | 99 | A99V | gCT | gTG | 1 | 6898 | All | 0 |
ORF3a | 99 | A99S | Gct | Tct | 5304 | 5307 | All | 0.001014 |
ORF3a | 99 | A99S | GcT | TcA | 3 | 5307 | All | 0.000001 |
ORF3a | 99 | A99T | Gct | Act | 3050 | 3050 | All | 0.000583 |
ORF3a | 99 | A99A | gcT | gcC | 1455 | 1866 | All | 0.000278 |
ORF3a | 99 | A99A | gcT | gcA | 303 | 1866 | All | 0.000058 |
ORF3a | 99 | A99A | gcT | gcG | 108 | 1866 | All | 0.000021 |
ORF3a | 99 | A99V | gCt | gTt | 1780 | 1780 | B.1.1.7 | 0.001593 |
ORF3a | 99 | A99T | Gct | Act | 1708 | 1708 | B.1.1.7 | 0.001529 |
ORF3a | 99 | A99S | Gct | Tct | 827 | 827 | AY.4 | 0.001287 |
ORF3a | 99 | A99A | gcT | gcC | 736 | 737 | AY.52 | 0.599349 |
ORF3a | 99 | A99A | gcT | gcA | 1 | 737 | AY.52 | 0.000814 |
ORF3a | 99 | A99V | gCt | gTt | 718 | 718 | AY.43 | 0.003181 |
ORF3a | 99 | A99T | Gct | Act | 705 | 705 | AY.4 | 0.001097 |
ORF3a | 99 | A99S | Gct | Tct | 676 | 676 | B.1.1.7 | 0.000605 |
ORF3a | 99 | A99V | gCt | gTt | 621 | 621 | AY.6 | 0.025541 |
ORF3a | 99 | A99V | gCt | gTt | 571 | 571 | B.1.356 | 0.986183 |
ORF3a | 99 | A99D | gCt | gAt | 418 | 418 | All | 0.00008 |
ORF3a | 99 | A99S | Gct | Tct | 383 | 383 | B.1.2 | 0.003372 |
ORF3a | 99 | A99V | gCt | gTt | 316 | 316 | B.1.617.2 | 0.00119 |
ORF3a | 99 | A99S | Gct | Tct | 305 | 305 | B.1.617.2 | 0.001148 |
ORF3a | 99 | A99V | gCt | gTt | 303 | 303 | AY.25 | 0.001822 |
ORF3a | 99 | A99S | Gct | Tct | 280 | 280 | B.1.258 | 0.018633 |
ORF3a | 99 | A99S | Gct | Tct | 274 | 274 | A.21 | 0.759003 |
ORF3a | 99 | A99A | gcT | gcA | 87 | 250 | B.1.1.7 | 0.000078 |
ORF3a | 99 | A99A | gcT | gcG | 83 | 250 | B.1.1.7 | 0.000074 |
ORF3a | 99 | A99A | gcT | gcC | 80 | 250 | B.1.1.7 | 0.000072 |
ORF3a | 99 | A99S | Gct | Tct | 238 | 238 | AY.43 | 0.001054 |
ORF3a | 99 | A99A | gcT | gcC | 225 | 230 | B.1.617.2 | 0.000847 |
ORF3a | 99 | A99A | gcT | gcA | 5 | 230 | B.1.617.2 | 0.000019 |
ORF3a | 99 | A99S | Gct | Tct | 185 | 185 | B.1 | 0.001695 |
ORF3a | 99 | A99P | Gct | Cct | 177 | 177 | All | 0.000034 |
ORF3a | 99 | A99V | gCt | gTt | 163 | 163 | AY.4 | 0.000254 |
ORF3a | 99 | A99T | Gct | Act | 149 | 149 | AY.3 | 0.001482 |
ORF3a | 99 | A99V | gCt | gTt | 143 | 143 | AY.3 | 0.001422 |
ORF3a | 99 | A99V | gCt | gTt | 142 | 142 | B.1.177.7 | 0.023409 |
ORF3a | 99 | A99del | GCT | --- | 127 | 127 | All | 0.000024 |
ORF3a | 99 | A99V | gCt | gTt | 124 | 124 | B.1.1 | 0.002249 |
ORF3a | 99 | A99S | Gct | Tct | 113 | 113 | AY.44 | 0.000688 |
ORF3a | 99 | A99A | gcT | gcA | 113 | 113 | B.1.576 | 0.102448 |
ORF3a | 99 | A99V | gCt | gTt | 110 | 110 | AY.80 | 0.124153 |
ORF3a | 99 | A99S | Gct | Tct | 109 | 109 | AY.102 | 0.00289 |
ORF3a | 99 | A99V | gCt | gTt | 108 | 108 | B.1.12 | 0.864 |
ORF3a | 99 | A99S | Gct | Tct | 102 | 102 | B.1.177 | 0.001343 |
ORF3a | 99 | A99S | Gct | Tct | 99 | 99 | B.1.1.519 | 0.003931 |
ORF3a | 99 | A99A | gcT | gcC | 94 | 94 | AY.119 | 0.003319 |
ORF3a | 99 | A99S | Gct | Tct | 94 | 94 | AY.9.2 | 0.003453 |
ORF3a | 99 | A99T | Gct | Act | 94 | 94 | B.1.603 | 1 |
ORF3a | 99 | A99S | Gct | Tct | 90 | 90 | AY.103 | 0.000559 |
ORF3a | 99 | A99V | gCt | gTt | 90 | 90 | AY.118 | 0.005638 |
ORF3a | 99 | A99S | Gct | Tct | 87 | 87 | AY.39 | 0.00215 |
ORF3a | 99 | A99D | gCt | gAt | 87 | 87 | AY.5 | 0.001796 |
ORF3a | 99 | A99V | gCt | gTt | 83 | 83 | B.1.160 | 0.002589 |
ORF3a | 99 | A99del1 | gcT | gc- | 81 | 82 | All | 0.000015 |
ORF3a | 99 | A99del1 | GCt | -Tt | 1 | 82 | All | 0 |
ORF3a | 99 | A99G | gCt | gGt | 79 | 81 | All | 0.000015 |
ORF3a | 99 | A99G | gCT | gGG | 2 | 81 | All | 0 |
ORF3a | 99 | A99V | gCt | gTt | 79 | 79 | B.1.306 | 0.451429 |
ORF3a | 99 | A99S | Gct | Tct | 76 | 76 | AY.3 | 0.000756 |
ORF3a | 99 | A99V | gCt | gTt | 73 | 73 | B.1.1.519 | 0.002899 |
ORF3a | 99 | A99S | Gct | Tct | 72 | 72 | AY.5 | 0.001487 |
ORF3a | 99 | A99V | gCt | gTt | 71 | 71 | AY.103 | 0.000441 |
ORF3a | 99 | A99A | gcT | gcC | 70 | 70 | B.1.189 | 0.300429 |
ORF3a | 99 | A99P | Gct | Cct | 68 | 68 | AY.47 | 0.002115 |
ORF3a | 99 | A99del1 | gcT | gc- | 66 | 67 | B.1.1.7 | 0.000059 |
ORF3a | 99 | A99del1 | GCt | -Tt | 1 | 67 | B.1.1.7 | 0.000001 |
ORF3a | 99 | A99D | gCt | gAt | 65 | 65 | AY.103 | 0.000404 |
ORF3a | 99 | A99T | Gct | Act | 64 | 64 | B.1.1 | 0.001161 |
ORF3a | 99 | A99V | gCt | gTt | 60 | 60 | B.1.2 | 0.000528 |
ORF3a | 99 | A99V | gCt | gTt | 60 | 60 | B.1.427 | 0.00303 |
ORF3a | 99 | A99S | Gct | Tct | 58 | 58 | AY.26 | 0.001642 |
ORF3a | 99 | A99S | Gct | Tct | 57 | 57 | AY.25 | 0.000343 |
ORF3a | 99 | A99V | gCt | gTt | 56 | 56 | AY.39 | 0.001384 |
ORF3a | 99 | A99V | gCt | gTt | 56 | 56 | AY.44 | 0.000341 |
ORF3a | 99 | A99V | gCt | gTt | 56 | 56 | B.1 | 0.000513 |
ORF3a | 99 | A99S | Gct | Tct | 52 | 52 | B.1.526 | 0.001222 |
ORF3a | 99 | A99V | gCt | gTt | 50 | 50 | B.1.177 | 0.000658 |
ORF3a | 99 | A99S | Gct | Tct | 48 | 48 | B.1.1 | 0.000871 |
ORF3a | 99 | A99D | gCt | gAt | 48 | 48 | B.1.617.2 | 0.000181 |
ORF3a | 99 | A99S | Gct | Tct | 47 | 47 | P.1 | 0.00074 |
ORF3a | 99 | A99V | gCt | gTt | 46 | 46 | P.1.8 | 0.220096 |
ORF3a | 99 | A99V | gCt | gTt | 44 | 44 | Q.1 | 0.005558 |
ORF3a | 99 | A99D | gCt | gAt | 43 | 43 | P.1.14 | 0.002055 |
ORF3a | 99 | A99A | gcT | gcC | 32 | 40 | AY.4 | 0.00005 |
ORF3a | 99 | A99A | gcT | gcG | 5 | 40 | AY.4 | 0.000008 |
ORF3a | 99 | A99A | gcT | gcA | 3 | 40 | AY.4 | 0.000005 |
ORF3a | 99 | A99S | Gct | Tct | 40 | 40 | B.1.530 | 0.285714 |
ORF3a | 99 | A99V | gCt | gTt | 40 | 40 | P.1 | 0.00063 |
ORF3a | 99 | A99S | Gct | Tct | 38 | 38 | AY.9.1 | 0.003182 |
ORF3a | 99 | A99T | Gct | Act | 36 | 36 | B.1.2 | 0.000317 |
ORF3a | 99 | A99A | gcT | gcA | 25 | 36 | B.1.2 | 0.00022 |
ORF3a | 99 | A99A | gcT | gcC | 11 | 36 | B.1.2 | 0.000097 |
ORF3a | 99 | A99S | Gct | Tct | 35 | 35 | AY.109 | 0.025888 |
ORF3a | 99 | A99A | gcT | gcC | 35 | 35 | AY.120 | 0.001301 |
ORF3a | 99 | A99V | gCt | gTt | 34 | 34 | AY.12 | 0.010746 |
ORF3a | 99 | A99S | Gct | Tct | 34 | 34 | B.1.1.318 | 0.01026 |
ORF3a | 99 | A99del | GCT | --- | 34 | 34 | B.1.1.7 | 0.00003 |
ORF3a | 99 | A99V | gCt | gTt | 33 | 33 | AY.121 | 0.004465 |
ORF3a | 99 | A99A | gcT | gcA | 24 | 31 | B.1 | 0.00022 |
ORF3a | 99 | A99A | gcT | gcC | 7 | 31 | B.1 | 0.000064 |
ORF3a | 99 | A99S | Gct | Tct | 31 | 31 | B.1.609 | 0.014861 |
ORF3a | 99 | A99F | GCt | TTt | 27 | 27 | All | 0.000005 |
ORF3a | 99 | A99A | gcT | gcC | 27 | 27 | AY.62 | 0.011765 |
ORF3a | 99 | A99D | gCt | gAt | 27 | 27 | B.1.1.7 | 0.000024 |
ORF3a | 99 | A99A | gcT | gcC | 26 | 27 | P.1 | 0.00041 |
ORF3a | 99 | A99A | gcT | gcA | 1 | 27 | P.1 | 0.000016 |
ORF3a | 99 | A99V | gCt | gTt | 26 | 26 | AY.26 | 0.000736 |
ORF3a | 99 | A99S | Gct | Tct | 26 | 26 | AY.27 | 0.001683 |
ORF3a | 99 | A99S | Gct | Tct | 26 | 26 | B.1.221 | 0.001847 |
ORF3a | 99 | A99D | gCt | gAt | 26 | 26 | B.1.438.1 | 0.002789 |
ORF3a | 99 | A99V | gCt | gTt | 26 | 26 | P.1.14 | 0.001243 |
ORF3a | 99 | A99S | Gct | Tct | 25 | 25 | B.1.1.92 | 0.833333 |
ORF3a | 99 | A99T | Gct | Act | 25 | 25 | B.1.617.2 | 0.000094 |
ORF3a | 99 | A99P | Gct | Cct | 23 | 23 | AY.4.2 | 0.000499 |
ORF3a | 99 | A99D | gCt | gAt | 23 | 23 | B.1 | 0.000211 |
ORF3a | 99 | A99S | Gct | Tct | 23 | 23 | B.1.1.432 | 0.029114 |
ORF3a | 99 | A99S | Gct | Tct | 23 | 23 | B.1.160 | 0.000717 |
ORF3a | 99 | A99V | gCt | gTt | 22 | 22 | AY.5 | 0.000454 |
ORF3a | 99 | A99S | Gct | Tct | 22 | 22 | B.1.351 | 0.000654 |
ORF3a | 99 | A99V | gCt | gTt | 19 | 19 | AY.102 | 0.000504 |
ORF3a | 99 | A99S | Gct | Tct | 19 | 19 | AY.15 | 0.042222 |
ORF3a | 99 | A99G | gCt | gGt | 19 | 19 | AY.4 | 0.00003 |
ORF3a | 99 | A99V | gCt | gTt | 19 | 19 | B.1.429 | 0.000447 |
ORF3a | 99 | A99V | gCt | gTt | 18 | 18 | AY.4.2 | 0.00039 |
ORF3a | 99 | A99V | gCt | gTt | 18 | 18 | B.1.1.222 | 0.003672 |
ORF3a | 99 | A99T | Gct | Act | 18 | 18 | B.1.595 | 0.004697 |
ORF3a | 99 | A99T | Gct | Act | 18 | 18 | P.1.14 | 0.00086 |
ORF3a | 99 | A99V | gCt | gTt | 17 | 17 | AE.8 | 0.008313 |
ORF3a | 99 | A99T | Gct | Act | 17 | 17 | B.1 | 0.000156 |
ORF3a | 99 | A99V | gCt | gTt | 17 | 17 | B.1.1.297 | 0.038031 |
ORF3a | 99 | A99S | Gct | Tct | 17 | 17 | B.1.1.341 | 1 |
ORF3a | 99 | A99V | gCt | gTt | 17 | 17 | B.1.526 | 0.0004 |
ORF3a | 99 | A99T | Gct | Act | 17 | 17 | Q.8 | 0.002803 |
ORF3a | 99 | A99S | Gct | Tct | 16 | 16 | AY.120 | 0.000595 |
ORF3a | 99 | A99S | Gct | Tct | 16 | 16 | AY.121 | 0.002165 |
ORF3a | 99 | A99S | Gct | Tct | 16 | 16 | AY.20 | 0.000622 |
ORF3a | 99 | A99G | gCt | gGt | 16 | 16 | AY.68 | 0.00438 |
ORF3a | 99 | A99V | gCt | gTt | 16 | 16 | AY.98 | 0.001264 |
ORF3a | 99 | A99S | Gct | Tct | 16 | 16 | B.1.637 | 0.001169 |
ORF3a | 99 | A99S | Gct | Tct | 15 | 15 | AY.33 | 0.001002 |
ORF3a | 99 | A99V | gCt | gTt | 15 | 15 | AY.46.2 | 0.00953 |
ORF3a | 99 | A99V | gCt | gTt | 15 | 15 | B.1.177.60 | 0.003277 |
ORF3a | 99 | A99T | Gct | Act | 14 | 14 | AY.103 | 0.000087 |
ORF3a | 99 | A99A | gcT | gcA | 10 | 14 | AY.103 | 0.000062 |
ORF3a | 99 | A99A | gcT | gcC | 4 | 14 | AY.103 | 0.000025 |
ORF3a | 99 | A99S | Gct | Tct | 14 | 14 | AY.117 | 0.001183 |
ORF3a | 99 | A99S | Gct | Tct | 14 | 14 | AY.46.4 | 0.002303 |
ORF3a | 99 | A99V | gCt | gTt | 14 | 14 | B.1.351 | 0.000416 |
ORF3a | 99 | A99A | gcT | gcC | 13 | 13 | AY.44 | 0.000079 |
ORF3a | 99 | A99del | GCT | --- | 13 | 13 | B.1 | 0.000119 |
ORF3a | 99 | A99T | Gct | Act | 13 | 13 | C.36.3 | 0.007374 |
ORF3a | 99 | A99V | gCt | gTt | 12 | 12 | AY.119 | 0.000424 |
ORF3a | 99 | A99D | gCt | gAt | 12 | 12 | AY.44 | 0.000073 |
ORF3a | 99 | A99S | Gct | Tct | 12 | 12 | AY.46 | 0.001249 |
ORF3a | 99 | A99V | gCt | gTt | 12 | 12 | AY.47 | 0.000373 |
ORF3a | 99 | A99V | gCt | gTt | 12 | 12 | B.1.177.44 | 0.006227 |
ORF3a | 99 | A99D | gCt | gAt | 12 | 12 | B.1.429 | 0.000282 |
ORF3a | 99 | A99S | Gct | Tct | 12 | 12 | B.1.595 | 0.003132 |
ORF3a | 99 | A99V | gCt | gTt | 12 | 12 | C.37 | 0.001393 |
ORF3a | 99 | A99P | Gct | Cct | 11 | 11 | AY.103 | 0.000068 |
ORF3a | 99 | A99S | Gct | Tct | 11 | 11 | AY.118 | 0.000689 |
ORF3a | 99 | A99S | Gct | Tct | 11 | 11 | AY.119 | 0.000388 |
ORF3a | 99 | A99V | gCt | gTt | 11 | 11 | AY.29 | 0.000174 |
ORF3a | 99 | A99S | Gct | Tct | 11 | 11 | AY.46.6 | 0.000794 |
ORF3a | 99 | A99S | Gct | Tct | 11 | 11 | B.1.1.222 | 0.002244 |
ORF3a | 99 | A99V | gCt | gTt | 11 | 11 | P.1.15 | 0.002556 |
ORF3a | 99 | A99V | gCt | gTt | 10 | 10 | A | 0.00387 |
ORF3a | 99 | A99P | Gct | Cct | 10 | 10 | AY.113 | 0.001424 |
ORF3a | 99 | A99S | Gct | Tct | 10 | 10 | AY.116 | 0.002868 |
ORF3a | 99 | A99V | gCt | gTt | 10 | 10 | AY.20 | 0.000389 |
ORF3a | 99 | A99S | Gct | Tct | 10 | 10 | AY.23 | 0.000697 |
ORF3a | 99 | A99T | Gct | Act | 10 | 10 | AY.29 | 0.000158 |
ORF3a | 99 | A99S | Gct | Tct | 10 | 10 | AY.29 | 0.000158 |
ORF3a | 99 | A99S | Gct | Tct | 10 | 10 | AY.42 | 0.000402 |
ORF3a | 99 | A99G | gCt | gGt | 10 | 10 | AY.5 | 0.000206 |
ORF3a | 99 | A99P | Gct | Cct | 10 | 10 | AY.5 | 0.000206 |
ORF3a | 99 | A99S | Gct | Tct | 10 | 10 | AY.61 | 0.001048 |
ORF3a | 99 | A99V | gCt | gTt | 10 | 10 | B.1.1.28 | 0.003112 |
ORF3a | 99 | A99S | Gct | Tct | 10 | 10 | B.1.429 | 0.000235 |
ORF3a | 99 | A99S | Gct | Tct | 10 | 10 | B.1.617.1 | 0.00129 |
ORF3a | 99 | A99V | gCt | gTt | 10 | 10 | P.2 | 0.001866 |
ORF3a | 99 | A99S | Gct | Tct | 9 | 9 | AY.14 | 0.000792 |
ORF3a | 99 | A99G | gCt | gGt | 9 | 9 | AY.39.2 | 0.013867 |
ORF3a | 99 | A99V | gCt | gTt | 9 | 9 | B.1.1.214 | 0.000499 |
ORF3a | 99 | A99A | gcT | gcG | 9 | 9 | B.1.1.284 | 0.000967 |
ORF3a | 99 | A99V | gCt | gTt | 9 | 9 | B.1.1.420 | 0.009054 |
ORF3a | 99 | A99P | Gct | Cct | 9 | 9 | B.1.1.7 | 0.000008 |
ORF3a | 99 | A99del | GCT | --- | 9 | 9 | B.1.177 | 0.000119 |
ORF3a | 99 | A99S | Gct | Tct | 9 | 9 | B.1.177.81 | 0.001704 |
ORF3a | 99 | A99V | gCt | gTt | 9 | 9 | B.1.232 | 0.004836 |
ORF3a | 99 | A99S | Gct | Tct | 9 | 9 | B.1.36 | 0.001313 |
ORF3a | 99 | A99V | gCt | gTt | 8 | 8 | AY.113 | 0.001139 |
ORF3a | 99 | A99S | Gct | Tct | 8 | 8 | AY.120.1 | 0.002568 |
ORF3a | 99 | A99S | Gct | Tct | 8 | 8 | AY.16 | 0.003037 |
ORF3a | 99 | A99S | Gct | Tct | 8 | 8 | AY.2 | 0.002849 |
ORF3a | 99 | A99T | Gct | Act | 8 | 8 | AY.20 | 0.000311 |
ORF3a | 99 | A99T | Gct | Act | 8 | 8 | AY.25 | 0.000048 |
ORF3a | 99 | A99D | gCt | gAt | 8 | 8 | AY.25 | 0.000048 |
ORF3a | 99 | A99V | gCt | gTt | 8 | 8 | AY.27 | 0.000518 |
ORF3a | 99 | A99V | gCt | gTt | 8 | 8 | AY.3.1 | 0.000682 |
ORF3a | 99 | A99V | gCt | gTt | 8 | 8 | AY.33 | 0.000534 |
ORF3a | 99 | A99V | gCt | gTt | 8 | 8 | AY.34 | 0.000776 |
ORF3a | 99 | A99D | gCt | gAt | 8 | 8 | AY.4 | 0.000012 |
ORF3a | 99 | A99S | Gct | Tct | 8 | 8 | AY.45 | 0.000973 |
ORF3a | 99 | A99V | gCt | gTt | 8 | 8 | AY.5.3 | 0.002699 |
ORF3a | 99 | A99F | GCt | TTt | 8 | 8 | AY.6 | 0.000329 |
ORF3a | 99 | A99S | Gct | Tct | 8 | 8 | AY.75 | 0.000448 |
ORF3a | 99 | A99V | gCt | gTt | 8 | 8 | AY.99.2 | 0.000737 |
ORF3a | 99 | A99T | Gct | Act | 8 | 8 | B.1.396 | 0.005646 |
ORF3a | 99 | A99T | Gct | Act | 8 | 8 | B.1.596 | 0.000697 |
ORF3a | 99 | A99V | gCt | gTt | 8 | 8 | B.1.621 | 0.000708 |
ORF3a | 99 | A99D | gCt | gAt | 8 | 8 | B.1.628 | 0.002819 |
ORF3a | 99 | A99V | gCt | gTt | 8 | 8 | B.1.637 | 0.000585 |
ORF3a | 99 | A99V | gCt | gTt | 8 | 8 | N.5 | 0.014134 |
ORF3a | 99 | A99S | Gct | Tct | 8 | 8 | P.1.14 | 0.000382 |
ORF3a | 99 | A99del2 | gCT | g-- | 4 | 7 | All | 0.000001 |
ORF3a | 99 | A99del2 | GCt | --t | 3 | 7 | All | 0.000001 |
ORF3a | 99 | A99A | gcT | gcC | 5 | 7 | AY.25 | 0.00003 |
ORF3a | 99 | A99A | gcT | gcA | 2 | 7 | AY.25 | 0.000012 |
ORF3a | 99 | A99T | Gct | Act | 7 | 7 | AY.43 | 0.000031 |
ORF3a | 99 | A99A | gcT | gcC | 5 | 7 | AY.43 | 0.000022 |
ORF3a | 99 | A99A | gcT | gcA | 1 | 7 | AY.43 | 0.000004 |
ORF3a | 99 | A99A | gcT | gcG | 1 | 7 | AY.43 | 0.000004 |
ORF3a | 99 | A99T | Gct | Act | 7 | 7 | AY.44 | 0.000043 |
ORF3a | 99 | A99V | gCt | gTt | 7 | 7 | AY.69 | 0.001307 |
ORF3a | 99 | A99S | Gct | Tct | 7 | 7 | AY.84 | 0.003062 |
ORF3a | 99 | A99V | gCt | gTt | 7 | 7 | AY.9.2 | 0.000257 |
ORF3a | 99 | A99S | Gct | Tct | 7 | 7 | AY.98 | 0.000553 |
ORF3a | 99 | A99T | Gct | Act | 7 | 7 | B.1.1.279 | 0.007848 |
ORF3a | 99 | A99V | gCt | gTt | 7 | 7 | B.1.243 | 0.000487 |
ORF3a | 99 | A99V | gCt | gTt | 7 | 7 | B.1.3 | 0.018325 |
ORF3a | 99 | A99S | Gct | Tct | 7 | 7 | B.1.351.3 | 0.006135 |
ORF3a | 99 | A99V | gCt | gTt | 7 | 7 | B.1.609 | 0.003356 |
ORF3a | 99 | A99D | gCt | gAt | 7 | 7 | P.1 | 0.00011 |
ORF3a | 99 | A99V | gCt | gTt | 7 | 7 | Q.8 | 0.001154 |
ORF3a | 99 | A99T | Gct | Act | 6 | 6 | A.28 | 0.015873 |
ORF3a | 99 | A99T | Gct | Act | 6 | 6 | AY.1 | 0.002374 |
ORF3a | 99 | A99S | Gct | Tct | 6 | 6 | AY.100 | 0.000276 |
ORF3a | 99 | A99G | gCt | gGt | 6 | 6 | AY.103 | 0.000037 |
ORF3a | 99 | A99V | gCt | gTt | 6 | 6 | AY.23 | 0.000418 |
ORF3a | 99 | A99S | Gct | Tct | 6 | 6 | AY.36 | 0.000889 |
ORF3a | 99 | A99V | gCt | gTt | 6 | 6 | AY.39.1 | 0.000238 |
ORF3a | 99 | A99S | Gct | Tct | 6 | 6 | AY.4.2 | 0.00013 |
ORF3a | 99 | A99S | Gct | Tct | 6 | 6 | AY.4.2.1 | 0.000894 |
ORF3a | 99 | A99del | GCT | --- | 6 | 6 | AY.43 | 0.000027 |
ORF3a | 99 | A99A | gcT | gcC | 4 | 6 | AY.98.1 | 0.000194 |
ORF3a | 99 | A99A | gcT | gcA | 2 | 6 | AY.98.1 | 0.000097 |
ORF3a | 99 | A99P | Gct | Cct | 6 | 6 | B.1 | 0.000055 |
ORF3a | 99 | A99V | gCt | gTt | 6 | 6 | B.1.1.189 | 0.009077 |
ORF3a | 99 | A99V | gCt | gTt | 6 | 6 | B.1.1.192 | 0.013857 |
ORF3a | 99 | A99S | Gct | Tct | 6 | 6 | B.1.1.216 | 0.005343 |
ORF3a | 99 | A99V | gCt | gTt | 6 | 6 | B.1.1.33 | 0.002525 |
ORF3a | 99 | A99S | Gct | Tct | 6 | 6 | B.1.234 | 0.000792 |
ORF3a | 99 | A99P | Gct | Cct | 6 | 6 | B.1.36.29 | 0.003104 |
ORF3a | 99 | A99S | Gct | Tct | 6 | 6 | B.1.427 | 0.000303 |
ORF3a | 99 | A99T | Gct | Act | 6 | 6 | B.1.429 | 0.000141 |
ORF3a | 99 | A99S | Gct | Tct | 6 | 6 | B.1.466.2 | 0.002347 |
ORF3a | 99 | A99S | Gct | Tct | 6 | 6 | B.1.525 | 0.000679 |
ORF3a | 99 | A99T | Gct | Act | 6 | 6 | B.1.575 | 0.00182 |
ORF3a | 99 | A99V | gCt | gTt | 6 | 6 | B.1.628 | 0.002114 |
ORF3a | 99 | A99V | gCt | gTt | 6 | 6 | C.36 | 0.005464 |
ORF3a | 99 | A99del | GCT | --- | 6 | 6 | P.1 | 0.000095 |
ORF3a | 99 | A99S | Gct | Tct | 6 | 6 | Q.8 | 0.000989 |
ORF3a | 99 | A99V | gCt | gTt | 6 | 6 | R.1 | 0.00054 |
ORF3a | 99 | A99S | Gct | Tct | 3 | 5 | 0.166667 | |
ORF3a | 99 | A99S | GcT | TcA | 2 | 5 | 0.111111 | |
ORF3a | 99 | A99A | gcT | gcC | 4 | 5 | AY.39 | 0.000099 |
ORF3a | 99 | A99A | gcT | gcG | 1 | 5 | AY.39 | 0.000025 |
ORF3a | 99 | A99S | Gct | Tct | 5 | 5 | AY.4.5 | 0.000537 |
ORF3a | 99 | A99V | gCt | gTt | 5 | 5 | AY.42 | 0.000201 |
ORF3a | 99 | A99D | gCt | gAt | 5 | 5 | AY.45 | 0.000608 |
ORF3a | 99 | A99D | gCt | gAt | 5 | 5 | AY.46 | 0.00052 |
ORF3a | 99 | A99V | gCt | gTt | 5 | 5 | AY.51 | 0.004545 |
ORF3a | 99 | A99V | gCt | gTt | 5 | 5 | AY.54 | 0.000477 |
ORF3a | 99 | A99S | Gct | Tct | 5 | 5 | AY.6 | 0.000206 |
ORF3a | 99 | A99A | gcT | gcC | 5 | 5 | AY.61 | 0.000524 |
ORF3a | 99 | A99V | gCt | gTt | 5 | 5 | AY.61 | 0.000524 |
ORF3a | 99 | A99V | gCt | gTt | 5 | 5 | AY.73 | 0.003327 |
ORF3a | 99 | A99V | gCt | gTt | 5 | 5 | B.1.147 | 0.003779 |
ORF3a | 99 | A99V | gCt | gTt | 5 | 5 | B.1.177.56 | 0.003338 |
ORF3a | 99 | A99T | Gct | Act | 5 | 5 | B.1.221 | 0.000355 |
ORF3a | 99 | A99V | gCt | gTt | 5 | 5 | B.1.258 | 0.000333 |
ORF3a | 99 | A99S | Gct | Tct | 5 | 5 | B.1.258.11 | 0.001982 |
ORF3a | 99 | A99T | Gct | Act | 5 | 5 | B.1.351.2 | 0.001513 |
ORF3a | 99 | A99V | gCt | gTt | 5 | 5 | B.1.36 | 0.00073 |
ORF3a | 99 | A99del | GCT | --- | 5 | 5 | B.1.525 | 0.000566 |
ORF3a | 99 | A99V | gCt | gTt | 5 | 5 | B.1.565 | 0.004052 |
ORF3a | 99 | A99S | Gct | Tct | 5 | 5 | B.1.596 | 0.000436 |
ORF3a | 99 | A99V | gCt | gTt | 5 | 5 | B.1.596 | 0.000436 |
ORF3a | 99 | A99V | gCt | gTt | 5 | 5 | B.1.617.1 | 0.000645 |
ORF3a | 99 | A99A | gcT | gcG | 5 | 5 | B.1.637 | 0.000365 |
ORF3a | 99 | A99V | gCt | gTt | 3 | 5 | B.1.91 | 0.006224 |
ORF3a | 99 | A99V | gCT | gTG | 1 | 5 | B.1.91 | 0.002075 |
ORF3a | 99 | A99V | gCT | gTA | 1 | 5 | B.1.91 | 0.002075 |
ORF3a | 99 | A99S | Gct | Tct | 5 | 5 | B.39 | 0.011655 |
ORF3a | 99 | A99S | Gct | Tct | 5 | 5 | C.36 | 0.004554 |
ORF3a | 99 | A99V | gCT | gTA | 2 | 4 | 0.111111 | |
ORF3a | 99 | A99V | gCt | gTt | 2 | 4 | 0.111111 | |
ORF3a | 99 | A99V | gCt | gTt | 4 | 4 | A.27 | 0.006623 |
ORF3a | 99 | A99V | gCt | gTt | 4 | 4 | AY.106 | 0.00134 |
ORF3a | 99 | A99V | gCt | gTt | 4 | 4 | AY.117 | 0.000338 |
ORF3a | 99 | A99V | gCt | gTt | 4 | 4 | AY.19 | 0.004561 |
ORF3a | 99 | A99S | Gct | Tct | 4 | 4 | AY.29.1 | 0.000882 |
ORF3a | 99 | A99A | gcT | gcC | 4 | 4 | AY.3 | 0.00004 |
ORF3a | 99 | A99F | GCt | TTt | 4 | 4 | AY.4 | 0.000006 |
ORF3a | 99 | A99D | gCt | gAt | 4 | 4 | AY.6 | 0.000165 |
ORF3a | 99 | A99S | Gct | Tct | 4 | 4 | AY.68 | 0.001095 |
ORF3a | 99 | A99S | Gct | Tct | 4 | 4 | AY.7.1 | 0.000451 |
ORF3a | 99 | A99S | Gct | Tct | 4 | 4 | AY.87 | 0.003331 |
ORF3a | 99 | A99V | gCt | gTt | 4 | 4 | AY.92 | 0.001149 |
ORF3a | 99 | A99S | Gct | Tct | 4 | 4 | AY.98.1 | 0.000194 |
ORF3a | 99 | A99V | gCt | gTt | 4 | 4 | AY.98.1 | 0.000194 |
ORF3a | 99 | A99A | gcT | gcC | 2 | 4 | B.1.1 | 0.000036 |
ORF3a | 99 | A99A | gcT | gcA | 2 | 4 | B.1.1 | 0.000036 |
ORF3a | 99 | A99S | Gct | Tct | 4 | 4 | B.1.1.218 | 0.030769 |
ORF3a | 99 | A99V | gCt | gTt | 4 | 4 | B.1.1.284 | 0.00043 |
ORF3a | 99 | A99S | Gct | Tct | 4 | 4 | B.1.1.291 | 0.00297 |
ORF3a | 99 | A99V | gCt | gTt | 4 | 4 | B.1.1.318 | 0.001207 |
ORF3a | 99 | A99V | gCt | gTt | 4 | 4 | B.1.1.371 | 0.041667 |
ORF3a | 99 | A99A | gcT | gcC | 4 | 4 | B.1.1.519 | 0.000159 |
ORF3a | 99 | A99F | GCt | TTt | 4 | 4 | B.1.1.519 | 0.000159 |
ORF3a | 99 | A99V | gCt | gTt | 4 | 4 | B.1.177.50 | 0.018779 |
ORF3a | 99 | A99T | Gct | Act | 4 | 4 | B.1.177.56 | 0.00267 |
ORF3a | 99 | A99V | gCt | gTt | 4 | 4 | B.1.177.81 | 0.000757 |
ORF3a | 99 | A99P | Gct | Cct | 4 | 4 | B.1.2 | 0.000035 |
ORF3a | 99 | A99S | Gct | Tct | 4 | 4 | B.1.438.1 | 0.000429 |
ORF3a | 99 | A99S | Gct | Tct | 4 | 4 | B.1.621 | 0.000354 |
ORF3a | 99 | A99S | Gct | Tct | 4 | 4 | B.1.9.5 | 0.022727 |
ORF3a | 99 | A99S | Gct | Tct | 4 | 4 | C.37 | 0.000464 |
ORF3a | 99 | A99del | GCT | --- | 4 | 4 | P.1.15 | 0.000929 |
ORF3a | 99 | A99S | Gct | Tct | 4 | 4 | P.2 | 0.000747 |
ORF3a | 99 | A99V | gCt | gTt | 3 | 3 | A.23.1 | 0.002113 |
ORF3a | 99 | A99L | GCT | TTA | 3 | 3 | All | 0.000001 |
ORF3a | 99 | A99V | gCt | gTt | 3 | 3 | AY.100 | 0.000138 |
ORF3a | 99 | A99T | Gct | Act | 3 | 3 | AY.102 | 0.00008 |
ORF3a | 99 | A99V | gCt | gTt | 3 | 3 | AY.120 | 0.000112 |
ORF3a | 99 | A99P | Gct | Cct | 3 | 3 | AY.120 | 0.000112 |
ORF3a | 99 | A99A | gcT | gcC | 2 | 3 | AY.20 | 0.000078 |
ORF3a | 99 | A99A | gcT | gcA | 1 | 3 | AY.20 | 0.000039 |
ORF3a | 99 | A99del | GCT | --- | 3 | 3 | AY.23 | 0.000209 |
ORF3a | 99 | A99V | gCt | gTt | 3 | 3 | AY.23.1 | 0.001252 |
ORF3a | 99 | A99del | GCT | --- | 3 | 3 | AY.25 | 0.000018 |
ORF3a | 99 | A99A | gcT | gcC | 3 | 3 | AY.26 | 0.000085 |
ORF3a | 99 | A99A | gcT | gcA | 3 | 3 | AY.29 | 0.000047 |
ORF3a | 99 | A99D | gCt | gAt | 3 | 3 | AY.3 | 0.00003 |
ORF3a | 99 | A99T | Gct | Act | 3 | 3 | AY.39 | 0.000074 |
ORF3a | 99 | A99S | Gct | Tct | 3 | 3 | AY.39.1 | 0.000119 |
ORF3a | 99 | A99P | Gct | Cct | 3 | 3 | AY.4 | 0.000005 |
ORF3a | 99 | A99V | gCt | gTt | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF3a | 99 | A99S | Gct | Tct | 3 | 3 | AY.4.4 | 0.001227 |
ORF3a | 99 | A99del | GCT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF3a | 99 | A99P | Gct | Cct | 3 | 3 | AY.42 | 0.000121 |
ORF3a | 99 | A99P | Gct | Cct | 3 | 3 | AY.44 | 0.000018 |
ORF3a | 99 | A99S | Gct | Tct | 3 | 3 | AY.47 | 0.000093 |
ORF3a | 99 | A99T | Gct | Act | 3 | 3 | AY.6 | 0.000123 |
ORF3a | 99 | A99A | gcT | gcC | 3 | 3 | AY.67 | 0.001393 |
ORF3a | 99 | A99A | gcT | gcC | 3 | 3 | AY.75 | 0.000168 |
ORF3a | 99 | A99S | Gct | Tct | 3 | 3 | AY.9 | 0.000203 |
ORF3a | 99 | A99S | Gct | Tct | 3 | 3 | AY.91 | 0.002191 |
ORF3a | 99 | A99V | gCt | gTt | 3 | 3 | B | 0.000383 |
ORF3a | 99 | A99S | Gct | Tct | 3 | 3 | B.1.1.10 | 0.003344 |
ORF3a | 99 | A99V | gCt | gTt | 3 | 3 | B.1.1.25 | 0.001706 |
ORF3a | 99 | A99A | gcT | gcC | 3 | 3 | B.1.1.39 | 0.001529 |
ORF3a | 99 | A99V | gCt | gTt | 3 | 3 | B.1.111 | 0.003525 |
ORF3a | 99 | A99S | Gct | Tct | 3 | 3 | B.1.160.25 | 0.033333 |
ORF3a | 99 | A99V | gCt | gTt | 3 | 3 | B.1.177.52 | 0.005272 |
ORF3a | 99 | A99S | Gct | Tct | 3 | 3 | B.1.177.60 | 0.000655 |
ORF3a | 99 | A99S | Gct | Tct | 3 | 3 | B.1.177.62 | 0.003576 |
ORF3a | 99 | A99V | gCt | gTt | 3 | 3 | B.1.177.73 | 0.001699 |
ORF3a | 99 | A99del1 | gcT | gc- | 3 | 3 | B.1.177.82 | 0.001432 |
ORF3a | 99 | A99S | Gct | Tct | 3 | 3 | B.1.22 | 0.003953 |
ORF3a | 99 | A99V | gCt | gTt | 3 | 3 | B.1.221 | 0.000213 |
ORF3a | 99 | A99V | gCt | gTt | 3 | 3 | B.1.234 | 0.000396 |
ORF3a | 99 | A99A | gcT | gcA | 2 | 3 | B.1.258 | 0.000133 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 3 | B.1.258 | 0.000067 |
ORF3a | 99 | A99A | gcT | gcC | 3 | 3 | B.1.258.14 | 0.002941 |
ORF3a | 99 | A99S | Gct | Tct | 3 | 3 | B.1.311 | 0.000824 |
ORF3a | 99 | A99del1 | gcT | gc- | 3 | 3 | B.1.351 | 0.000089 |
ORF3a | 99 | A99T | Gct | Act | 3 | 3 | B.1.36 | 0.000438 |
ORF3a | 99 | A99S | Gct | Tct | 3 | 3 | B.1.36.16 | 0.004274 |
ORF3a | 99 | A99S | Gct | Tct | 3 | 3 | B.1.36.29 | 0.001552 |
ORF3a | 99 | A99V | gCt | gTt | 3 | 3 | B.1.378 | 0.020548 |
ORF3a | 99 | A99S | Gct | Tct | 3 | 3 | B.1.397 | 0.014563 |
ORF3a | 99 | A99S | Gct | Tct | 3 | 3 | B.1.420 | 0.03125 |
ORF3a | 99 | A99V | gCt | gTt | 3 | 3 | B.1.576 | 0.00272 |
ORF3a | 99 | A99del | GCT | --- | 3 | 3 | B.1.621 | 0.000266 |
ORF3a | 99 | A99V | gCt | gTt | 3 | 3 | B.40 | 0.001093 |
ORF3a | 99 | A99S | Gct | Tct | 3 | 3 | C.31 | 0.053571 |
ORF3a | 99 | A99S | Gct | Tct | 3 | 3 | R.1 | 0.00027 |
ORF3a | 99 | A99F | GCt | TTt | 2 | 2 | 0.111111 | |
ORF3a | 99 | A99L | GCT | TTA | 2 | 2 | 0.111111 | |
ORF3a | 99 | A99A | gcT | gcA | 2 | 2 | 0.111111 | |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | A.2.5.1 | 0.009615 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | A.23.1 | 0.001408 |
ORF3a | 99 | A99D | gCt | gAt | 2 | 2 | A.24 | 0.142857 |
ORF3a | 99 | A99E | gCT | gAA | 2 | 2 | All | 0 |
ORF3a | 99 | A99I | GCt | ATt | 2 | 2 | All | 0 |
ORF3a | 99 | A99A | gcT | gcA | 2 | 2 | AY.100 | 0.000092 |
ORF3a | 99 | A99D | gCt | gAt | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 99 | A99T | Gct | Act | 2 | 2 | AY.104 | 0.003968 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | AY.106 | 0.00067 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | AY.108 | 0.002205 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | AY.116 | 0.000574 |
ORF3a | 99 | A99T | Gct | Act | 2 | 2 | AY.13 | 0.000322 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | AY.13 | 0.000322 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | AY.13 | 0.000322 |
ORF3a | 99 | A99T | Gct | Act | 2 | 2 | AY.14 | 0.000176 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | AY.16 | 0.000759 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | AY.16.1 | 0.00094 |
ORF3a | 99 | A99A | gcT | gcC | 2 | 2 | AY.16.1 | 0.00094 |
ORF3a | 99 | A99P | Gct | Cct | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | AY.35 | 0.000466 |
ORF3a | 99 | A99del | GCT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 99 | A99A | gcT | gcC | 2 | 2 | AY.4.2 | 0.000043 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 99 | A99G | gCt | gGt | 2 | 2 | AY.42 | 0.00008 |
ORF3a | 99 | A99G | gCt | gGt | 2 | 2 | AY.45 | 0.000243 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | AY.45 | 0.000243 |
ORF3a | 99 | A99A | gcT | gcC | 2 | 2 | AY.46 | 0.000208 |
ORF3a | 99 | A99T | Gct | Act | 2 | 2 | AY.47 | 0.000062 |
ORF3a | 99 | A99G | gCt | gGt | 2 | 2 | AY.47 | 0.000062 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | AY.5.3 | 0.000675 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | AY.51 | 0.001818 |
ORF3a | 99 | A99del1 | gcT | gc- | 2 | 2 | AY.52 | 0.001629 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | AY.63 | 0.000774 |
ORF3a | 99 | A99A | gcT | gcC | 2 | 2 | AY.7.1 | 0.000225 |
ORF3a | 99 | A99A | gcT | gcA | 2 | 2 | AY.70 | 0.000417 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | AY.70 | 0.000417 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | AY.71 | 0.00095 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | AY.75 | 0.000112 |
ORF3a | 99 | A99T | Gct | Act | 2 | 2 | AY.75 | 0.000112 |
ORF3a | 99 | A99A | gcT | gcC | 2 | 2 | AY.85 | 0.000854 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | AY.9 | 0.000135 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | AY.95 | 0.001522 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | AY.95 | 0.001522 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | B.1.1.1 | 0.000653 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | B.1.1.1 | 0.000653 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | B.1.1.163 | 0.015267 |
ORF3a | 99 | A99T | Gct | Act | 2 | 2 | B.1.1.216 | 0.001781 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | B.1.1.220 | 0.003717 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | B.1.1.277 | 0.001517 |
ORF3a | 99 | A99T | Gct | Act | 2 | 2 | B.1.1.311 | 0.000716 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | B.1.1.326 | 0.003521 |
ORF3a | 99 | A99G | gCt | gGt | 1 | 2 | B.1.1.33 | 0.000421 |
ORF3a | 99 | A99A | gcT | gcA | 1 | 2 | B.1.1.33 | 0.000421 |
ORF3a | 99 | A99A | gcT | gcG | 1 | 2 | B.1.1.33 | 0.000421 |
ORF3a | 99 | A99G | gCT | gGG | 1 | 2 | B.1.1.33 | 0.000421 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | B.1.1.50 | 0.001358 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | B.1.1.513 | 0.024691 |
ORF3a | 99 | A99T | Gct | Act | 2 | 2 | B.1.1.519 | 0.000079 |
ORF3a | 99 | A99P | Gct | Cct | 2 | 2 | B.1.1.519 | 0.000079 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | B.1.1.523 | 0.003125 |
ORF3a | 99 | A99I | GCt | ATt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF3a | 99 | A99del2 | gCT | g-- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF3a | 99 | A99del2 | GCt | --t | 1 | 2 | B.1.1.7 | 0.000001 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | B.1.110.3 | 0.001437 |
ORF3a | 99 | A99del1 | gcT | gc- | 2 | 2 | B.1.160 | 0.000062 |
ORF3a | 99 | A99A | gcT | gcC | 2 | 2 | B.1.160 | 0.000062 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | B.1.160.16 | 0.001859 |
ORF3a | 99 | A99T | Gct | Act | 2 | 2 | B.1.177 | 0.000026 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | B.1.177.12 | 0.000303 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | B.1.177.57 | 0.000562 |
ORF3a | 99 | A99G | gCt | gGt | 2 | 2 | B.1.177.60 | 0.000437 |
ORF3a | 99 | A99D | gCt | gAt | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | B.1.240 | 0.000431 |
ORF3a | 99 | A99D | gCt | gAt | 2 | 2 | B.1.243 | 0.000139 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | B.1.243 | 0.000139 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | B.1.265 | 0.002541 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | B.1.279 | 0.001027 |
ORF3a | 99 | A99D | gCt | gAt | 2 | 2 | B.1.36 | 0.000292 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | B.1.36.8 | 0.002 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | B.1.367 | 0.001585 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | B.1.369 | 0.00057 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | B.1.393 | 0.057143 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | B.1.395 | 0.014085 |
ORF3a | 99 | A99A | gcT | gcG | 1 | 2 | B.1.429 | 0.000024 |
ORF3a | 99 | A99A | gcT | gcA | 1 | 2 | B.1.429 | 0.000024 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | B.1.438 | 0.013072 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | B.1.456 | 0.006536 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | B.1.503 | 0.004975 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | B.1.551 | 0.002581 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | B.1.564 | 0.000852 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | B.1.564.1 | 0.003155 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | B.1.575 | 0.000607 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | B.1.588 | 0.00182 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 2 | B.1.596 | 0.000087 |
ORF3a | 99 | A99A | gcT | gcA | 1 | 2 | B.1.596 | 0.000087 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | B.1.597 | 0.009259 |
ORF3a | 99 | A99del | GCT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 99 | A99P | Gct | Cct | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 99 | A99F | GCt | TTt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 99 | A99T | Gct | Act | 2 | 2 | B.1.619.1 | 0.001283 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | B.1.625 | 0.004706 |
ORF3a | 99 | A99T | Gct | Act | 2 | 2 | B.1.637 | 0.000146 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 99 | A99S | GcT | TcA | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 99 | A99G | gCT | gGG | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 99 | A99G | gCt | gGt | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 99 | A99A | gcT | gcA | 2 | 2 | C.36.3 | 0.001134 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | D.2 | 0.00015 |
ORF3a | 99 | A99T | Gct | Act | 2 | 2 | P.1 | 0.000032 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | P.1.13 | 0.001797 |
ORF3a | 99 | A99V | gCt | gTt | 2 | 2 | P.1.17 | 0.000324 |
ORF3a | 99 | A99S | Gct | Tct | 2 | 2 | P.1.17 | 0.000324 |
ORF3a | 99 | A99C | GCt | TGt | 1 | 1 | 0.055556 | |
ORF3a | 99 | A99G | gCt | gGt | 1 | 1 | 0.055556 | |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | A | 0.000387 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | A | 0.000387 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | A.1 | 0.000282 |
ORF3a | 99 | A99F | GCt | TTt | 1 | 1 | A.21 | 0.00277 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | A.25 | 0.018182 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | A.5 | 0.001923 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AA.4 | 0.009091 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AB.1 | 0.008197 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AE.1 | 0.011364 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AE.8 | 0.000489 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | AE.8 | 0.000489 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | AH.3 | 0.003802 |
ORF3a | 99 | A99Y | GCt | TAt | 1 | 1 | All | 0 |
ORF3a | 99 | A99C | GCt | TGt | 1 | 1 | All | 0 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AT.1 | 0.005128 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AU.3 | 0.00211 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | AV.1 | 0.005051 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | AY.109 | 0.00074 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.109 | 0.00074 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 99 | A99D | gCt | gAt | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 99 | A99P | Gct | Cct | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | AY.120.2 | 0.001285 |
ORF3a | 99 | A99G | gCt | gGt | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 99 | A99D | gCt | gAt | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 99 | A99G | gCt | gGt | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 99 | A99P | Gct | Cct | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 99 | A99del1 | gcT | gc- | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 99 | A99D | gCt | gAt | 1 | 1 | AY.38 | 0.000499 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 99 | A99D | gCt | gAt | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 99 | A99D | gCt | gAt | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.4.1 | 0.000737 |
ORF3a | 99 | A99D | gCt | gAt | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.4.3 | 0.000842 |
ORF3a | 99 | A99D | gCt | gAt | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 99 | A99A | gcT | gcA | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.40 | 0.000964 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AY.41 | 0.000294 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 99 | A99P | Gct | Cct | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 99 | A99del2 | GCt | --t | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 99 | A99G | gCt | gGt | 1 | 1 | AY.46.1 | 0.001027 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 99 | A99D | gCt | gAt | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | AY.48 | 0.000465 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.48 | 0.000465 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | AY.52 | 0.000814 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AY.52 | 0.000814 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 99 | A99A | gcT | gcA | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 99 | A99P | Gct | Cct | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.63 | 0.000387 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 99 | A99P | Gct | Cct | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | AY.73 | 0.000665 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.77 | 0.001127 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | AY.77 | 0.001127 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AY.79 | 0.001211 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.8 | 0.000606 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AY.82 | 0.001357 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | AY.89 | 0.004902 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 99 | A99F | GCt | TTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | AY.93 | 0.000273 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AY.93 | 0.000273 |
ORF3a | 99 | A99F | GCt | TTt | 1 | 1 | AY.94 | 0.000443 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AY.94 | 0.000443 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B | 0.000128 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | B | 0.000128 |
ORF3a | 99 | A99del2 | GCt | --t | 1 | 1 | B.1 | 0.000009 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 99 | A99P | Gct | Cct | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 99 | A99D | gCt | gAt | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.1.10 | 0.001115 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | B.1.1.101 | 0.01 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.135 | 0.004695 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.161 | 0.003534 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.186 | 0.003436 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.192 | 0.002309 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.194 | 0.00495 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.207 | 0.001182 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.1.239 | 0.032258 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.243 | 0.004082 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.1.256 | 0.013699 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.258 | 0.003257 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | B.1.1.258 | 0.003257 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.263 | 0.001558 |
ORF3a | 99 | A99E | gCT | gAA | 1 | 1 | B.1.1.265 | 0.003155 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.1.265 | 0.003155 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.279 | 0.001121 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 99 | A99D | gCt | gAt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.282 | 0.011628 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.284 | 0.000107 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.1.305 | 0.003861 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.312 | 0.001912 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 99 | A99A | gcT | gcA | 1 | 1 | B.1.1.326 | 0.001761 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.1.344 | 0.010753 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.1.362 | 0.005618 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.1.368 | 0.003086 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.37 | 0.000193 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | B.1.1.397 | 0.002252 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.1.413 | 0.006897 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.416 | 0.000905 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.1.416 | 0.000905 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.419 | 0.007407 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | B.1.1.434 | 0.000349 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.1.435 | 0.034483 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.46 | 0.004367 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.51 | 0.001718 |
ORF3a | 99 | A99D | gCt | gAt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.526 | 0.003546 |
ORF3a | 99 | A99E | gCT | gAA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 99 | A99G | gCt | gGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.1.71 | 0.006061 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.1.93 | 0.025641 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.112 | 0.005181 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.118 | 0.006711 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | B.1.126 | 0.001276 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.139 | 0.000733 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.139 | 0.000733 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.147 | 0.000756 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 99 | A99del2 | gCT | g-- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.161 | 0.017241 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.170 | 0.00431 |
ORF3a | 99 | A99del2 | gCT | g-- | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 99 | A99G | gCt | gGt | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 99 | A99P | Gct | Cct | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 99 | A99A | gcT | gcA | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 99 | A99D | gCt | gAt | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.177.10 | 0.000878 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.177.32 | 0.00135 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | B.1.177.32 | 0.00135 |
ORF3a | 99 | A99D | gCt | gAt | 1 | 1 | B.1.177.33 | 0.001645 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.177.56 | 0.000668 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.177.58 | 0.001332 |
ORF3a | 99 | A99del1 | gcT | gc- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 99 | A99F | GCt | TTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.177.75 | 0.001041 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.177.79 | 0.002342 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.177.82 | 0.000477 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.177.87 | 0.000728 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.199 | 0.004132 |
ORF3a | 99 | A99F | GCt | TTt | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.206 | 0.000816 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.210 | 0.002132 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | B.1.214 | 0.003663 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.222 | 0.001692 |
ORF3a | 99 | A99A | gcT | gcA | 1 | 1 | B.1.223 | 0.002778 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.239 | 0.001221 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.241 | 0.000812 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.250 | 0.014493 |
ORF3a | 99 | A99G | gCt | gGt | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.258.14 | 0.00098 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | B.1.258.22 | 0.002667 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.282 | 0.014925 |
ORF3a | 99 | A99A | gcT | gcA | 1 | 1 | B.1.285 | 0.090909 |
ORF3a | 99 | A99P | Gct | Cct | 1 | 1 | B.1.314 | 0.007519 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.324 | 0.001605 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.333 | 0.010526 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.336 | 0.002439 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 99 | A99P | Gct | Cct | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 99 | A99del1 | gcT | gc- | 1 | 1 | B.1.36.1 | 0.00114 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF3a | 99 | A99A | gcT | gcA | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 99 | A99del2 | gCT | g-- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF3a | 99 | A99P | Gct | Cct | 1 | 1 | B.1.36.39 | 0.002217 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.36.8 | 0.001 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.361 | 0.001289 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | B.1.362 | 0.001541 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | B.1.362 | 0.001541 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.380 | 0.006623 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | B.1.399 | 0.001934 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.400 | 0.000429 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | B.1.400 | 0.000429 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.404 | 0.001302 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.408 | 0.00369 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.417 | 0.028571 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.428 | 0.00102 |
ORF3a | 99 | A99G | gCt | gGt | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 99 | A99P | Gct | Cct | 1 | 1 | B.1.452 | 0.013699 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | B.1.460 | 0.017857 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.470 | 0.001404 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.473 | 0.019231 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | B.1.483 | 0.111111 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.491 | 0.052632 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.492 | 0.007042 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | B.1.517 | 0.000427 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.520 | 0.021739 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 99 | A99A | gcT | gcA | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | B.1.564 | 0.000426 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.565 | 0.00081 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.582 | 0.000491 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.600 | 0.005848 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 99 | A99G | gCt | gGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 99 | A99del1 | gcT | gc- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 99 | A99A | gcT | gcA | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | B.1.623 | 0.000536 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.631 | 0.003367 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.635 | 0.017544 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.1.9.3 | 0.038462 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | B.1.9.5 | 0.005682 |
ORF3a | 99 | A99A | gcT | gcA | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 99 | A99F | GCt | TTt | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 99 | A99L | GCT | TTA | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.3 | 0.000831 |
ORF3a | 99 | A99P | Gct | Cct | 1 | 1 | B.39 | 0.002331 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | B.6.6 | 0.000889 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | C.16 | 0.00106 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | C.27 | 0.018519 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | C.35 | 0.000774 |
ORF3a | 99 | A99Y | GCt | TAt | 1 | 1 | C.37 | 0.000116 |
ORF3a | 99 | A99D | gCt | gAt | 1 | 1 | C.37 | 0.000116 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | C.37 | 0.000116 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | C.37 | 0.000116 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | C.37.1 | 0.002618 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | D.2 | 0.000075 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | D.2 | 0.000075 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | N.3 | 0.005814 |
ORF3a | 99 | A99F | GCt | TTt | 1 | 1 | P.1 | 0.000016 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 99 | A99A | gcT | gcG | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | P.1.10 | 0.000269 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 99 | A99A | gcT | gcG | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | P.1.7 | 0.000319 |
ORF3a | 99 | A99D | gCt | gAt | 1 | 1 | P.2 | 0.000187 |
ORF3a | 99 | A99A | gcT | gcC | 1 | 1 | P.2 | 0.000187 |
ORF3a | 99 | A99D | gCt | gAt | 1 | 1 | P.3 | 0.001595 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | P.6 | 0.003145 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 99 | A99V | gCt | gTt | 1 | 1 | Q.3 | 0.000145 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 99 | A99S | Gct | Tct | 1 | 1 | Q.7 | 0.001111 |
ORF3a | 99 | A99D | gCt | gAt | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 99 | A99del1 | gcT | gc- | 1 | 1 | R.1 | 0.00009 |
ORF3a | 99 | A99T | Gct | Act | 1 | 1 | R.1 | 0.00009 |
ORF3a | 99 | A99del | GCT | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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