CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 96

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a96L96LsynctCctT271122140.81667325678-25680
ORF3a96L96LsynctCctG27112850.10512725678-25680
ORF3a96L96LsynctCctA27112100.077462225678-25680
ORF3a96L96LsynCtCTtA271110.00036886825678-25680
ORF3a96L96LsynCtCTtG271110.00036886825678-25680
ORF3a96L96FnonsynCtcTtc131613010.98860225678-25680
ORF3a96L96FnonsynCtCTtT1316150.011398225678-25680
ORF3a96L96PnonsyncTccCc9349140.97858725678-25680
ORF3a96L96PnonsyncTCcCT934200.021413325678-25680
ORF3a96L96InonsynCtcAtc7927910.99873725678-25680
ORF3a96L96InonsynCtCAtA79210.0012626325678-25680
ORF3a96L96deldelCTC---128128125678-25680
ORF3a96L96RnonsyncTccGc55480.87272725678-25680
ORF3a96L96RnonsyncTCcGA5530.054545525678-25680
ORF3a96L96RnonsynCTCAGA5520.036363625678-25680
ORF3a96L96RnonsyncTCcGG5510.018181825678-25680
ORF3a96L96RnonsyncTCcGT5510.018181825678-25680
ORF3a96L96HnonsyncTccAc3939125678-25680
ORF3a96L96QnonsyncTCcAA66125678-25680
ORF3a96L96VnonsynCtcGtc540.825678-25680
ORF3a96L96del1delctCct-520.425678-25680
ORF3a96L96del1delCtc-tc510.225678-25680
ORF3a96L96del1delCtC-tG510.225678-25680
ORF3a96L96VnonsynCtCGtT510.225678-25680
ORF3a96L96del1delCTC-NN510.225678-25680
ORF3a96L96NnonsynCTcAAc33125678-25680
ORF3a96L96SnonsynCTcAGc33125678-25680
ORF3a96L96KnonsynCTCAAA22125678-25680
ORF3a96L96AnonsynCTCGCT11125678-25680
ORF3a96L96YnonsynCTcTAc11125678-25680
ORF3a96L96TnonsynCTCACA11125678-25680
ORF3a96L96GnonsynCTCGGA11125678-25680
ORF3a96L96EnonsynCTCGAA11125678-25680
ORF3a96L96XnonsynCTCTAA11125678-25680
ORF3a96L96del2delcTCc--11125678-25680

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a96L96LctCctT22142711All0.000423
ORF3a96L96LctCctG2852711All0.000055
ORF3a96L96LctCctA2102711All0.00004
ORF3a96L96LCtCTtA12711All0
ORF3a96L96LCtCTtG12711All0
ORF3a96L96FCtcTtc13011316All0.000249
ORF3a96L96FCtCTtT151316All0.000003
ORF3a96L96PcTccCc914934All0.000175
ORF3a96L96PcTCcCT20934All0.000004
ORF3a96L96ICtcAtc791792All0.000151
ORF3a96L96ICtCAtA1792All0
ORF3a96L96ICtcAtc711711AY.39.10.028165
ORF3a96L96LctCctT586588B.1.617.20.002207
ORF3a96L96LctCctA2588B.1.617.20.000008
ORF3a96L96PcTccCc561561AY.40.000873
ORF3a96L96FCtcTtc403415AY.390.009959
ORF3a96L96FCtCTtT12415AY.390.000297
ORF3a96L96LctCctT201325B.1.1.70.00018
ORF3a96L96LctCctA121325B.1.1.70.000108
ORF3a96L96LctCctG3325B.1.1.70.000003
ORF3a96L96LctCctG262263AY.39.10.010379
ORF3a96L96LctCctT1263AY.39.10.00004
ORF3a96L96LctCctT222222B.1.5410.982301
ORF3a96L96LctCctT220220B.1.4270.011109
ORF3a96L96delCTC---128128All0.000024
ORF3a96L96FCtcTtc114114B.1.1.70.000102
ORF3a96L96LctCctT113113AY.980.008926
ORF3a96L96FCtcTtc106106B.1.1770.001396
ORF3a96L96FCtcTtc9393AY.230.006487
ORF3a96L96LctCctT7783AY.40.00012
ORF3a96L96LctCctA583AY.40.000008
ORF3a96L96LctCctG183AY.40.000002
ORF3a96L96LctCctT8282B.1.4290.001929
ORF3a96L96PcTccCc7581B.1.1.70.000067
ORF3a96L96PcTCcCT681B.1.1.70.000005
ORF3a96L96FCtcTtc7171AY.440.000432
ORF3a96L96LctCctT7070AY.30.000696
ORF3a96L96LctCctT6363B.1.4430.294393
ORF3a96L96FCtcTtc5757B.1.2430.003966
ORF3a96L96RcTccGc4855All0.000009
ORF3a96L96RcTCcGA355All0.000001
ORF3a96L96RCTCAGA255All0
ORF3a96L96RcTCcGG155All0
ORF3a96L96RcTCcGT155All0
ORF3a96L96PcTccCc5454AY.3.10.004604
ORF3a96L96FCtcTtc5151AY.40.000079
ORF3a96L96FCtcTtc4748B.1.617.20.000177
ORF3a96L96FCtCTtT148B.1.617.20.000004
ORF3a96L96FCtcTtc4647AY.430.000204
ORF3a96L96FCtCTtT147AY.430.000004
ORF3a96L96LctCctT4747B.1.1.700.01603
ORF3a96L96LctCctT4242B.1.1600.00131
ORF3a96L96PcTccCc4142B.1.617.20.000154
ORF3a96L96PcTCcCT142B.1.617.20.000004
ORF3a96L96LctCctT2640B.10.000238
ORF3a96L96LctCctA740B.10.000064
ORF3a96L96LctCctG540B.10.000046
ORF3a96L96LCtCTtG140B.10.000009
ORF3a96L96LCtCTtA140B.10.000009
ORF3a96L96HcTccAc3939All0.000007
ORF3a96L96PcTccCc3939AY.50.000805
ORF3a96L96LctCctT3537AY.1030.000217
ORF3a96L96LctCctA137AY.1030.000006
ORF3a96L96LctCctG137AY.1030.000006
ORF3a96L96delCTC---3232B.1.1.70.000029
ORF3a96L96FCtcTtc2727AY.1020.000716
ORF3a96L96LctCctT2727AY.1190.000953
ORF3a96L96LctCctT2226AY.440.000134
ORF3a96L96LctCctA326AY.440.000018
ORF3a96L96LctCctG126AY.440.000006
ORF3a96L96LctCctT2525AY.4.50.002687
ORF3a96L96FCtcTtc2424AY.460.002498
ORF3a96L96LctCctT2424B.1.6210.002124
ORF3a96L96FCtcTtc2323B.1.3510.000684
ORF3a96L96LctCctT2123B.1.5260.000494
ORF3a96L96LctCctG223B.1.5260.000047
ORF3a96L96LctCctT1722B.1.20.00015
ORF3a96L96LctCctA322B.1.20.000026
ORF3a96L96LctCctG222B.1.20.000018
ORF3a96L96LctCctA2020B.60.018198
ORF3a96L96LctCctT1718AY.430.000075
ORF3a96L96LctCctA118AY.430.000004
ORF3a96L96FCtcTtc1818B.1.20.000158
ORF3a96L96FCtcTtc1717AY.30.000169
ORF3a96L96LctCctT1717AY.9.10.001423
ORF3a96L96FCtcTtc1616AW.10.04878
ORF3a96L96FCtcTtc1616AY.1030.000099
ORF3a96L96LctCctT1616AY.270.001036
ORF3a96L96PcTccCc1616B.1.1770.000211
ORF3a96L96PcTccCc1313AY.1030.000081
ORF3a96L96LctCctT1313B.1.10.000236
ORF3a96L96PcTccCc1313B.1.1.2220.002652
ORF3a96L96ICtcAtc1313B.1.617.20.000049
ORF3a96L96FCtcTtc1212AY.1000.000552
ORF3a96L96delCTC---1212B.10.00011
ORF3a96L96PcTccCc712B.10.000064
ORF3a96L96PcTCcCT512B.10.000046
ORF3a96L96PcTccCc1212B.1.10.000218
ORF3a96L96LctCctT1212C.370.001393
ORF3a96L96LctCctT1011AY.390.000247
ORF3a96L96LctCctA111AY.390.000025
ORF3a96L96RcTccGc99AY.40.000014
ORF3a96L96PcTccCc99AY.590.004767
ORF3a96L96FCtcTtc99B.1.10.000163
ORF3a96L96LctCctT99B.1.1.1800.096774
ORF3a96L96LctCctT99B.1.596.10.084112
ORF3a96L96LctCctA99C.30.10.060403
ORF3a96L96LctCctT88AY.1170.000676
ORF3a96L96LctCctT88AY.200.000311
ORF3a96L96LctCctT78AY.250.000042
ORF3a96L96LctCctG18AY.250.000006
ORF3a96L96PcTccCc88AY.30.00008
ORF3a96L96HcTccAc88B.10.000073
ORF3a96L96FCtcTtc78B.10.000064
ORF3a96L96FCtCTtT18B.10.000009
ORF3a96L96ICtcAtc88B.1.1.70.000007
ORF3a96L96delCTC---88B.1.1770.000105
ORF3a96L96FCtcTtc88B.1.4290.000188
ORF3a96L96LctCctT88B.1.5950.002088
ORF3a96L96FCtcTtc88P.10.000126
ORF3a96L96LctCctT77AY.1020.000186
ORF3a96L96LctCctT77AY.1060.002344
ORF3a96L96FCtcTtc77AY.250.000042
ORF3a96L96FCtcTtc77AY.290.00011
ORF3a96L96LctCctT77AY.290.00011
ORF3a96L96LctCctT77B.1.5610.002779
ORF3a96L96LctCctT67P.1.140.000287
ORF3a96L96LctCctA17P.1.140.000048
ORF3a96L96QcTCcAA66All0.000001
ORF3a96L96PcTccCc66AY.1190.000212
ORF3a96L96LctCctT46AY.260.000113
ORF3a96L96LctCctA26AY.260.000057
ORF3a96L96ICtcAtc66AY.390.000148
ORF3a96L96delCTC---66AY.430.000027
ORF3a96L96FCtcTtc66AY.450.00073
ORF3a96L96RcTccGc66AY.9.10.000502
ORF3a96L96PcTccCc66B.1.1.5190.000238
ORF3a96L96RcTccGc66B.1.1.70.000005
ORF3a96L96FCtcTtc66B.1.1600.000187
ORF3a96L96FCtcTtc66B.1.2210.000426
ORF3a96L96LctCctT56B.1.5960.000436
ORF3a96L96LctCctA16B.1.5960.000087
ORF3a96L96RcTccGc26B.1.910.004149
ORF3a96L96RcTCcGA26B.1.910.004149
ORF3a96L96RCTCAGA26B.1.910.004149
ORF3a96L96LctCctA66B.6.60.005333
ORF3a96L96delCTC---66P.10.000095
ORF3a96L96LctCctT66P.10.000095
ORF3a96L96LctCctT66P.1.70.001916
ORF3a96L96VCtcGtc45All0.000001
ORF3a96L96del1ctCct-25All0
ORF3a96L96del1Ctc-tc15All0
ORF3a96L96del1CTC-NN15All0
ORF3a96L96del1CtC-tG15All0
ORF3a96L96VCtCGtT15All0
ORF3a96L96FCtcTtc55AY.1180.000313
ORF3a96L96HcTccAc55AY.40.000008
ORF3a96L96PcTccCc55AY.430.000022
ORF3a96L96HcTccAc55AY.440.00003
ORF3a96L96PcTccCc55AY.440.00003
ORF3a96L96PcTccCc55B.1.1.2070.00591
ORF3a96L96FCtcTtc55B.1.130.011876
ORF3a96L96delCTC---55B.1.5250.000566
ORF3a96L96LctCctA55Q.80.000825
ORF3a96L96LctCctT44AY.1110.000733
ORF3a96L96FCtcTtc44AY.1170.000338
ORF3a96L96FCtcTtc44AY.200.000155
ORF3a96L96PcTccCc44AY.200.000155
ORF3a96L96FCtcTtc44AY.260.000113
ORF3a96L96LctCctA44AY.3.10.000341
ORF3a96L96LctCctT44AY.4.20.000087
ORF3a96L96delCTC---44AY.4.50.00043
ORF3a96L96RcTccGc34AY.430.000013
ORF3a96L96RcTCcGG14AY.430.000004
ORF3a96L96ICtcAtc44AY.440.000024
ORF3a96L96LctCctT44AY.520.003257
ORF3a96L96HcTccAc44B.1.1.70.000004
ORF3a96L96LctCctA34B.1.466.20.001174
ORF3a96L96LctCctT14B.1.466.20.000391
ORF3a96L96delCTC---44P.1.150.000929
ORF3a96L96NCTcAAc33All0.000001
ORF3a96L96SCTcAGc33All0.000001
ORF3a96L96LctCctT33AY.1000.000138
ORF3a96L96ICtcAtc33AY.1030.000019
ORF3a96L96PcTccCc33AY.16.10.00141
ORF3a96L96ICtcAtc33AY.200.000117
ORF3a96L96delCTC---33AY.230.000209
ORF3a96L96RcTccGc33AY.250.000018
ORF3a96L96delCTC---33AY.250.000018
ORF3a96L96ICtcAtc33AY.260.000085
ORF3a96L96ICtcAtc33AY.370.000948
ORF3a96L96PcTccCc33AY.390.000074
ORF3a96L96ICtcAtc33AY.430.000013
ORF3a96L96FCtcTtc33AY.530.000863
ORF3a96L96ICtcAtc33AY.650.001599
ORF3a96L96FCtcTtc33AY.9.20.00011
ORF3a96L96QcTCcAA33B.10.000027
ORF3a96L96ICtcAtc33B.10.000027
ORF3a96L96RcTccGc33B.1.1.150.040541
ORF3a96L96FCtcTtc33B.1.1.2140.000166
ORF3a96L96ICtcAtc33B.1.1.4280.028302
ORF3a96L96del1ctCct-23B.1.1.70.000002
ORF3a96L96del1Ctc-tc13B.1.1.70.000001
ORF3a96L96ICtcAtc33B.1.1770.00004
ORF3a96L96PcTccCc33B.1.20.000026
ORF3a96L96LctCctT33B.1.2580.0002
ORF3a96L96LctCctA23B.1.3510.000059
ORF3a96L96LctCctT13B.1.3510.00003
ORF3a96L96FCtcTtc33B.1.438.10.000322
ORF3a96L96LctCctT33B.1.438.10.000322
ORF3a96L96delCTC---33B.1.6210.000266
ORF3a96L96LctCctT23B.1.6230.001073
ORF3a96L96LctCctA13B.1.6230.000536
ORF3a96L96LctCctT33D.20.000225
ORF3a96L96FCtcTtc33P.1.70.000958
ORF3a96L96delCTC---220.111111
ORF3a96L96VCtcGtc220.111111
ORF3a96L96LctCctG220.111111
ORF3a96L96KCTCAAA22All0
ORF3a96L96ICtcAtc22AY.1020.000053
ORF3a96L96RcTccGc22AY.1030.000012
ORF3a96L96FCtcTtc22AY.160.000759
ORF3a96L96LctCctA12AY.230.00007
ORF3a96L96LctCctT12AY.230.00007
ORF3a96L96ICtcAtc22AY.250.000012
ORF3a96L96ICtcAtc22AY.30.00002
ORF3a96L96FCtcTtc22AY.330.000134
ORF3a96L96LctCctT22AY.350.000466
ORF3a96L96delCTC---22AY.440.000012
ORF3a96L96LctCctT22AY.50.000041
ORF3a96L96FCtcTtc22AY.570.001312
ORF3a96L96FCtcTtc22AY.720.002721
ORF3a96L96PcTCcCT12AY.750.000056
ORF3a96L96PcTccCc12AY.750.000056
ORF3a96L96LctCctT22AY.9.20.000073
ORF3a96L96PcTCcCT12AY.9.20.000037
ORF3a96L96PcTccCc12AY.9.20.000037
ORF3a96L96FCtcTtc22AY.900.001369
ORF3a96L96PcTccCc22AY.98.10.000097
ORF3a96L96FCtcTtc22AY.99.20.000184
ORF3a96L96RcTccGc12B.10.000009
ORF3a96L96RcTCcGA12B.10.000009
ORF3a96L96LctCctT22B.1.1.3060.000877
ORF3a96L96LctCctT22B.1.1.3710.020833
ORF3a96L96FCtcTtc22B.1.1.5190.000079
ORF3a96L96LctCctT22B.1.110.30.001437
ORF3a96L96FCtcTtc22B.1.140.035088
ORF3a96L96HcTccAc22B.1.1600.000062
ORF3a96L96LctCctT22B.1.1770.000026
ORF3a96L96LctCctT22B.1.177.70.00033
ORF3a96L96LctCctT22B.1.2430.000139
ORF3a96L96LctCctT22B.1.258.140.001961
ORF3a96L96FCtcTtc22B.1.3110.000549
ORF3a96L96PcTccCc22B.1.3110.000549
ORF3a96L96LctCctT22B.1.3490.00143
ORF3a96L96LctCctT12B.1.360.000146
ORF3a96L96LctCctG12B.1.360.000146
ORF3a96L96LctCctA22B.1.4650.007605
ORF3a96L96LctCctA22B.1.5400.019417
ORF3a96L96PcTCcCT22B.1.617.10.000258
ORF3a96L96delCTC---22B.1.617.20.000008
ORF3a96L96FCtcTtc22B.1.6280.000705
ORF3a96L96LctCctT22B.1.6370.000146
ORF3a96L96KCTCAAA22B.1.910.004149
ORF3a96L96NCTcAAc22B.1.910.004149
ORF3a96L96SCTcAGc22B.1.910.004149
ORF3a96L96QcTCcAA22B.1.910.004149
ORF3a96L96HcTccAc22B.1.910.004149
ORF3a96L96LctCctT22C.160.002121
ORF3a96L96delCTC---22C.370.000232
ORF3a96L96FCtcTtc22P.1.140.000096
ORF3a96L96HcTccAc22P.60.006289
ORF3a96L96LctCctT22R.10.00018
ORF3a96L96LctCctA11A0.000387
ORF3a96L96delCTC---11A0.000387
ORF3a96L96PcTccCc11A0.000387
ORF3a96L96delCTC---11AD.20.000219
ORF3a96L96delCTC---11AH.30.003802
ORF3a96L96TCTCACA11All0
ORF3a96L96GCTCGGA11All0
ORF3a96L96ECTCGAA11All0
ORF3a96L96del2cTCc--11All0
ORF3a96L96YCTcTAc11All0
ORF3a96L96XCTCTAA11All0
ORF3a96L96ACTCGCT11All0
ORF3a96L96delCTC---11AV.10.005051
ORF3a96L96LctCctA11AY.10.000396
ORF3a96L96ICtcAtc11AY.1000.000046
ORF3a96L96delCTC---11AY.1000.000046
ORF3a96L96HcTccAc11AY.1030.000006
ORF3a96L96ICtcAtc11AY.1060.000335
ORF3a96L96FCtcTtc11AY.1060.000335
ORF3a96L96PcTccCc11AY.1080.001103
ORF3a96L96delCTC---11AY.1080.001103
ORF3a96L96delCTC---11AY.1100.000113
ORF3a96L96delCTC---11AY.1110.000183
ORF3a96L96RcTccGc11AY.1110.000183
ORF3a96L96delCTC---11AY.1130.000142
ORF3a96L96LctCctT11AY.1150.005208
ORF3a96L96FCtcTtc11AY.1190.000035
ORF3a96L96HcTccAc11AY.1190.000035
ORF3a96L96ICtcAtc11AY.120.000316
ORF3a96L96LctCctT11AY.1200.000037
ORF3a96L96LctCctT11AY.1210.000135
ORF3a96L96PcTccCc11AY.140.000088
ORF3a96L96LctCctT11AY.140.000088
ORF3a96L96RcTccGc11AY.160.00038
ORF3a96L96LctCctT11AY.160.00038
ORF3a96L96LctCctT11AY.16.10.00047
ORF3a96L96delCTC---11AY.200.000039
ORF3a96L96HcTccAc11AY.200.000039
ORF3a96L96PcTccCc11AY.230.00007
ORF3a96L96HcTccAc11AY.250.000006
ORF3a96L96FCtcTtc11AY.270.000065
ORF3a96L96delCTC---11AY.290.000016
ORF3a96L96ICtcAtc11AY.290.000016
ORF3a96L96HcTccAc11AY.30.00001
ORF3a96L96HcTccAc11AY.3.10.000085
ORF3a96L96NCTcAAc11AY.300.000396
ORF3a96L96SCTcAGc11AY.300.000396
ORF3a96L96HcTccAc11AY.300.000396
ORF3a96L96RcTccGc11AY.300.000396
ORF3a96L96LctCctA11AY.330.000067
ORF3a96L96PcTccCc11AY.340.000097
ORF3a96L96FCtcTtc11AY.340.000097
ORF3a96L96RcTccGc11AY.340.000097
ORF3a96L96delCTC---11AY.34.10.00051
ORF3a96L96delCTC---11AY.350.000233
ORF3a96L96delCTC---11AY.360.000148
ORF3a96L96delCTC---11AY.390.000025
ORF3a96L96FCtcTtc11AY.39.20.001541
ORF3a96L96ICtcAtc11AY.40.000002
ORF3a96L96VCtcGtc11AY.40.000002
ORF3a96L96delCTC---11AY.4.20.000022
ORF3a96L96FCtcTtc11AY.4.20.000022
ORF3a96L96PcTccCc11AY.4.2.10.000149
ORF3a96L96FCtcTtc11AY.4.30.000842
ORF3a96L96LctCctT11AY.410.000294
ORF3a96L96PcTccCc11AY.420.00004
ORF3a96L96RcTccGc11AY.420.00004
ORF3a96L96LctCctT11AY.460.000104
ORF3a96L96LctCctT11AY.46.10.001027
ORF3a96L96LctCctG11AY.46.60.000072
ORF3a96L96LctCctT11AY.470.000031
ORF3a96L96PcTccCc11AY.470.000031
ORF3a96L96FCtcTtc11AY.470.000031
ORF3a96L96FCtcTtc11AY.50.000021
ORF3a96L96RcTccGc11AY.520.000814
ORF3a96L96delCTC---11AY.520.000814
ORF3a96L96PcTccCc11AY.530.000288
ORF3a96L96FCtcTtc11AY.540.000095
ORF3a96L96LctCctT11AY.570.000656
ORF3a96L96LctCctT11AY.60.000041
ORF3a96L96LctCctT11AY.610.000105
ORF3a96L96FCtcTtc11AY.620.000436
ORF3a96L96delCTC---11AY.680.000274
ORF3a96L96PcTccCc11AY.680.000274
ORF3a96L96RcTccGc11AY.690.000187
ORF3a96L96FCtcTtc11AY.7.10.000113
ORF3a96L96LctCctT11AY.740.000116
ORF3a96L96ICtcAtc11AY.750.000056
ORF3a96L96LctCctT11AY.75.10.00018
ORF3a96L96FCtcTtc11AY.770.001127
ORF3a96L96FCtcTtc11AY.880.000884
ORF3a96L96FCtcTtc11AY.90.000068
ORF3a96L96FCtcTtc11AY.9.10.000084
ORF3a96L96RcTccGc11AY.9.20.000037
ORF3a96L96FCtcTtc11AY.980.000079
ORF3a96L96FCtcTtc11AY.98.10.000048
ORF3a96L96FCtcTtc11AY.990.001049
ORF3a96L96PcTccCc11AY.99.20.000092
ORF3a96L96LctCctT11B0.000128
ORF3a96L96delCTC---11B0.000128
ORF3a96L96ICtcAtc11B0.000128
ORF3a96L96FCtcTtc11B0.000128
ORF3a96L96ECTCGAA11B.10.000009
ORF3a96L96YCTcTAc11B.10.000009
ORF3a96L96XCTCTAA11B.10.000009
ORF3a96L96GCTCGGA11B.10.000009
ORF3a96L96RcTccGc11B.1.10.000018
ORF3a96L96del1CtC-tG11B.1.1.1010.01
ORF3a96L96LctCctT11B.1.1.2160.00089
ORF3a96L96LctCctT11B.1.1.2180.007692
ORF3a96L96LctCctT11B.1.1.2210.010101
ORF3a96L96FCtcTtc11B.1.1.250.000569
ORF3a96L96LctCctG11B.1.1.250.000569
ORF3a96L96LctCctT11B.1.1.2990.012195
ORF3a96L96FCtcTtc11B.1.1.3060.000438
ORF3a96L96RcTCcGT11B.1.1.3060.000438
ORF3a96L96del1CTC-NN11B.1.1.3150.008475
ORF3a96L96delCTC---11B.1.1.3150.008475
ORF3a96L96LctCctG11B.1.1.3260.001761
ORF3a96L96HcTccAc11B.1.1.330.000421
ORF3a96L96RcTccGc11B.1.1.330.000421
ORF3a96L96FCtcTtc11B.1.1.3440.010753
ORF3a96L96FCtcTtc11B.1.1.3510.002793
ORF3a96L96LctCctT11B.1.1.3570.125
ORF3a96L96LctCctT11B.1.1.370.000193
ORF3a96L96delCTC---11B.1.1.4090.002833
ORF3a96L96delCTC---11B.1.1.4200.001006
ORF3a96L96LctCctA11B.1.1.440.00241
ORF3a96L96LctCctT11B.1.1.470.005348
ORF3a96L96LctCctT11B.1.1.510.001718
ORF3a96L96ICtcAtc11B.1.1.5190.00004
ORF3a96L96LctCctT11B.1.1.5190.00004
ORF3a96L96VCtCGtT11B.1.1.70.000001
ORF3a96L96del2cTCc--11B.1.1.70.000001
ORF3a96L96delCTC---11B.1.1400.018868
ORF3a96L96HcTccAc11B.1.1570.002985
ORF3a96L96delCTC---11B.1.1600.000031
ORF3a96L96HcTccAc11B.1.1770.000013
ORF3a96L96LctCctT11B.1.177.120.000152
ORF3a96L96LctCctT11B.1.177.210.000076
ORF3a96L96FCtcTtc11B.1.177.210.000076
ORF3a96L96PcTccCc11B.1.177.210.000076
ORF3a96L96ICtcAtc11B.1.177.440.000519
ORF3a96L96delCTC---11B.1.177.510.004566
ORF3a96L96delCTC---11B.1.177.620.001192
ORF3a96L96FCtcTtc11B.1.177.810.000189
ORF3a96L96LctCctT11B.1.177.810.000189
ORF3a96L96PcTCcCT11B.1.1790.003759
ORF3a96L96LctCctA11B.1.1820.007246
ORF3a96L96delCTC---11B.1.20.000009
ORF3a96L96ICtCAtA11B.1.20.000009
ORF3a96L96QcTCcAA11B.1.20.000009
ORF3a96L96RcTccGc11B.1.20.000009
ORF3a96L96FCtcTtc11B.1.2100.002132
ORF3a96L96PcTccCc11B.1.2210.000071
ORF3a96L96LctCctT11B.1.2340.000132
ORF3a96L96FCtcTtc11B.1.2580.000067
ORF3a96L96PcTCcCT11B.1.2600.003344
ORF3a96L96LctCctT11B.1.3110.000275
ORF3a96L96LctCctT11B.1.3130.006579
ORF3a96L96ACTCGCT11B.1.3510.00003
ORF3a96L96VCtcGtc11B.1.360.000146
ORF3a96L96FCtcTtc11B.1.36.10.00114
ORF3a96L96LctCctT11B.1.36.190.009259
ORF3a96L96PcTCcCT11B.1.36.80.001
ORF3a96L96LctCctT11B.1.36.80.001
ORF3a96L96delCTC---11B.1.3620.001541
ORF3a96L96LctCctT11B.1.3670.000792
ORF3a96L96delCTC---11B.1.416.10.001563
ORF3a96L96LctCctT11B.1.4360.001029
ORF3a96L96FCtcTtc11B.1.4620.007246
ORF3a96L96LctCctT11B.1.5030.002488
ORF3a96L96LctCctT11B.1.5090.000866
ORF3a96L96LctCctA11B.1.5240.001406
ORF3a96L96FCtcTtc11B.1.5260.000024
ORF3a96L96RcTccGc11B.1.5260.000024
ORF3a96L96ICtcAtc11B.1.5260.000024
ORF3a96L96PcTCcCT11B.1.5370.02
ORF3a96L96ICtcAtc11B.1.5610.000397
ORF3a96L96FCtcTtc11B.1.5610.000397
ORF3a96L96LctCctT11B.1.5640.000426
ORF3a96L96LctCctT11B.1.5750.000303
ORF3a96L96ICtcAtc11B.1.5950.000261
ORF3a96L96delCTC---11B.1.5960.000087
ORF3a96L96HcTccAc11B.1.5960.000087
ORF3a96L96delCTC---11B.1.617.10.000129
ORF3a96L96LctCctG11B.1.617.10.000129
ORF3a96L96TCTCACA11B.1.617.20.000004
ORF3a96L96FCtcTtc11B.1.619.10.000641
ORF3a96L96PcTccCc11B.1.6210.000089
ORF3a96L96FCtcTtc11B.1.6210.000089
ORF3a96L96delCTC---11B.1.6380.052632
ORF3a96L96FCtcTtc11B.4.70.010101
ORF3a96L96PcTccCc11B.6.60.000889
ORF3a96L96LctCctA11B.6.80.008264
ORF3a96L96LctCctT11C.140.004329
ORF3a96L96PcTccCc11C.370.000116
ORF3a96L96ICtcAtc11C.370.000116
ORF3a96L96ICtcAtc11P.10.000016
ORF3a96L96RcTccGc11P.1.10.000318
ORF3a96L96LctCctT11P.1.120.000484
ORF3a96L96PcTccCc11P.1.140.000048
ORF3a96L96FCtcTtc11P.1.150.000232
ORF3a96L96LctCctT11P.1.160.000374
ORF3a96L96LctCctT11P.1.170.000162
ORF3a96L96ICtcAtc11P.1.170.000162
ORF3a96L96FCtcTtc11P.1.170.000162
ORF3a96L96LctCctT11P.30.001595
ORF3a96L96LctCctT11P.60.003145
ORF3a96L96LctCctT11P.70.004367
ORF3a96L96delCTC---11Q.40.000455
ORF3a96L96PcTccCc11Q.70.001111
ORF3a96L96PcTccCc11Q.80.000165
ORF3a96L96ICtcAtc11R.10.00009
ORF3a96L96PcTccCc11R.10.00009
ORF3a96L96delCTC---11U.30.003861