CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 95

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a95L95FnonsynttGttT13431134130.9986625675-25677
ORF3a95L95FnonsynttGttC13431180.0013401825675-25677
ORF3a95L95SnonsyntTgtCg331433130.99969825675-25677
ORF3a95L95SnonsyntTGtCT331410.0003017525675-25677
ORF3a95L95LsynttGttA7875680.72172825675-25677
ORF3a95L95LsynTtgCtg7871940.24650625675-25677
ORF3a95L95LsynTtGCtA787250.031766225675-25677
ORF3a95L95WnonsyntTgtGg243243125675-25677
ORF3a95L95MnonsynTtgAtg195195125675-25677
ORF3a95L95VnonsynTtgGtg1451400.96551725675-25677
ORF3a95L95VnonsynTtGGtT14540.027586225675-25677
ORF3a95L95VnonsynTtGGtC14510.0068965525675-25677
ORF3a95L95deldelTTG---131131125675-25677
ORF3a95L95XnonsyntTgtAg14130.92857125675-25677
ORF3a95L95XnonsyntTGtAA1410.071428625675-25677
ORF3a95L95GnonsynTTgGGg1080.825675-25677
ORF3a95L95GnonsynTTGGGT1010.125675-25677
ORF3a95L95GnonsynTTGGGA1010.125675-25677
ORF3a95L95EnonsynTTgGAg980.88888925675-25677
ORF3a95L95EnonsynTTGGAA910.11111125675-25677
ORF3a95L95CnonsyntTGtGT650.83333325675-25677
ORF3a95L95CnonsyntTGtGC610.16666725675-25677
ORF3a95L95QnonsynTTgCAg55125675-25677
ORF3a95L95del2deltTGt--44125675-25677
ORF3a95L95YnonsyntTGtAT33125675-25677
ORF3a95L95del1delttGtt-33125675-25677
ORF3a95L95DnonsynTTGGAT33125675-25677
ORF3a95L95InonsynTtGAtT320.66666725675-25677
ORF3a95L95RnonsynTTgAGg320.66666725675-25677
ORF3a95L95KnonsynTTgAAg320.66666725675-25677
ORF3a95L95InonsynTtGAtC310.33333325675-25677
ORF3a95L95RnonsynTTGAGA310.33333325675-25677
ORF3a95L95KnonsynTTGAAA310.33333325675-25677
ORF3a95L95PnonsynTTGCCT11125675-25677

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a95L95FttGttT1341313431All0.002565
ORF3a95L95FttGttC1813431All0.000003
ORF3a95L95FttGttT92459245B.1.438.10.991634
ORF3a95L95StTgtCg33133314All0.000634
ORF3a95L95StTGtCT13314All0
ORF3a95L95StTgtCg28832883AY.390.071243
ORF3a95L95LttGttA568787All0.000109
ORF3a95L95LTtgCtg194787All0.000037
ORF3a95L95LTtGCtA25787All0.000005
ORF3a95L95FttGttT737741B.1.1.70.00066
ORF3a95L95FttGttC4741B.1.1.70.000004
ORF3a95L95FttGttT626627AY.40.000974
ORF3a95L95FttGttC1627AY.40.000002
ORF3a95L95FttGttT487487B.1.177.450.185665
ORF3a95L95LttGttA340346AY.40.000529
ORF3a95L95LTtgCtg6346AY.40.000009
ORF3a95L95WtTgtGg243243All0.000046
ORF3a95L95WtTgtGg225225AY.470.006999
ORF3a95L95MTtgAtg195195All0.000037
ORF3a95L95FttGttT188188B.1.617.20.000708
ORF3a95L95MTtgAtg162162AT.10.830769
ORF3a95L95VTtgGtg140145All0.000027
ORF3a95L95VTtGGtT4145All0.000001
ORF3a95L95VTtGGtC1145All0
ORF3a95L95FttGttT143143AY.1030.000888
ORF3a95L95FttGttT131132AY.440.000797
ORF3a95L95FttGttC1132AY.440.000006
ORF3a95L95delTTG---131131All0.000025
ORF3a95L95LttGttA93128B.1.1.70.000083
ORF3a95L95LTtgCtg24128B.1.1.70.000021
ORF3a95L95LTtGCtA11128B.1.1.70.00001
ORF3a95L95FttGttT119119B.1.1.2140.006599
ORF3a95L95FttGttT104104AY.1180.006515
ORF3a95L95FttGttT101102B.1.20.000889
ORF3a95L95FttGttC1102B.1.20.000009
ORF3a95L95FttGttT9898AY.430.000434
ORF3a95L95FttGttT8787AY.360.012895
ORF3a95L95FttGttT8282AY.1020.002174
ORF3a95L95LTtgCtg7481AY.440.00045
ORF3a95L95LttGttA781AY.440.000043
ORF3a95L95StTgtCg7979AY.430.00035
ORF3a95L95FttGttT7071AY.250.000421
ORF3a95L95FttGttC171AY.250.000006
ORF3a95L95FttGttT6970B.1.10.001252
ORF3a95L95FttGttC170B.1.10.000018
ORF3a95L95StTgtCg6565AY.250.000391
ORF3a95L95FttGttT6262B.1.4380.405229
ORF3a95L95FttGttT5959B.10.00054
ORF3a95L95VTtgGtg5858AY.250.000349
ORF3a95L95FttGttT5555AY.1000.00253
ORF3a95L95StTgtCg5555B.1.617.20.000207
ORF3a95L95StTgtCg5252AY.39.10.00206
ORF3a95L95FttGttT5252B.1.438.21
ORF3a95L95VTtgGtg4747B.1.1.70.000042
ORF3a95L95FttGttT4343AY.130.006922
ORF3a95L95FttGttT4343AY.30.000428
ORF3a95L95FttGttT3636AY.420.001448
ORF3a95L95FttGttT3232AY.4.20.000694
ORF3a95L95delTTG---3131B.1.1.70.000028
ORF3a95L95FttGttT3131P.10.000488
ORF3a95L95StTgtCg2929B.1.1.1700.03616
ORF3a95L95LttGttA1528B.1.617.20.000056
ORF3a95L95LTtgCtg1228B.1.617.20.000045
ORF3a95L95LTtGCtA128B.1.617.20.000004
ORF3a95L95FttGttT2223B.1.1770.00029
ORF3a95L95FttGttC123B.1.1770.000013
ORF3a95L95FttGttT2222AY.116.10.006851
ORF3a95L95LTtgCtg1422B.1.20.000123
ORF3a95L95LttGttA822B.1.20.00007
ORF3a95L95FttGttT2020Q.70.022222
ORF3a95L95StTgtCg1919AY.1010.009318
ORF3a95L95FttGttT1919B.1.1.5190.000755
ORF3a95L95FttGttT1818AY.330.001202
ORF3a95L95FttGttT1717AY.1090.012574
ORF3a95L95FttGttT1616B.1.3510.000476
ORF3a95L95FttGttT1515AY.98.10.000726
ORF3a95L95FttGttT1515B.1.1.4011
ORF3a95L95XtTgtAg1314All0.000002
ORF3a95L95XtTGtAA114All0
ORF3a95L95FttGttT1414AY.340.001358
ORF3a95L95LTtgCtg1313AY.1030.000081
ORF3a95L95FttGttT1313AY.1200.000483
ORF3a95L95FttGttT1313AY.120.20.01671
ORF3a95L95FttGttT1313AY.260.000368
ORF3a95L95StTgtCg1313AY.440.000079
ORF3a95L95FttGttT1313AY.50.000268
ORF3a95L95LTtGCtA613B.10.000055
ORF3a95L95LTtgCtg613B.10.000055
ORF3a95L95LttGttA113B.10.000009
ORF3a95L95FttGttT1313B.1.4290.000306
ORF3a95L95FttGttT1313B.1.438.31
ORF3a95L95FttGttT1212AY.1010.005885
ORF3a95L95FttGttT1212AY.200.000466
ORF3a95L95FttGttT1212AY.230.000837
ORF3a95L95LttGttA1112AY.330.000735
ORF3a95L95LTtgCtg112AY.330.000067
ORF3a95L95FttGttT1112AY.390.000272
ORF3a95L95FttGttC112AY.390.000025
ORF3a95L95StTgtCg1112AY.40.000017
ORF3a95L95StTGtCT112AY.40.000002
ORF3a95L95FttGttT1212AY.9.20.000441
ORF3a95L95delTTG---1212B.10.00011
ORF3a95L95StTgtCg1212P.10.000189
ORF3a95L95FttGttT1111AY.750.000616
ORF3a95L95LTtgCtg1111AY.9.20.000404
ORF3a95L95GTTgGGg810All0.000002
ORF3a95L95GTTGGGA110All0
ORF3a95L95GTTGGGT110All0
ORF3a95L95LttGttA910AY.250.000054
ORF3a95L95LTtgCtg110AY.250.000006
ORF3a95L95FttGttT1010AY.39.10.000396
ORF3a95L95FttGttT1010AY.460.001041
ORF3a95L95MTtgAtg1010B.1.1.3050.03861
ORF3a95L95StTgtCg1010B.1.1.70.000009
ORF3a95L95FttGttT1010B.1.3960.007057
ORF3a95L95ETTgGAg89All0.000002
ORF3a95L95ETTGGAA19All0
ORF3a95L95LttGttA99AY.1090.006657
ORF3a95L95FttGttT99AY.5.30.003036
ORF3a95L95FttGttT99B.1.1.1530.009858
ORF3a95L95FttGttT99B.1.1600.000281
ORF3a95L95delTTG---99B.1.1770.000119
ORF3a95L95LTtgCtg99Q.40.004093
ORF3a95L95FttGttT88AY.290.000126
ORF3a95L95MTtgAtg88B.10.000073
ORF3a95L95FttGttT88B.1.1.2310.024768
ORF3a95L95FttGttT88B.1.1.2650.025237
ORF3a95L95FttGttT88B.1.1.4160.00724
ORF3a95L95FttGttT88B.1.360.001167
ORF3a95L95FttGttT88B.1.5750.002427
ORF3a95L95LttGttA48B.1.617.10.000516
ORF3a95L95LTtgCtg28B.1.617.10.000258
ORF3a95L95LTtGCtA28B.1.617.10.000258
ORF3a95L95FttGttT67AY.1190.000212
ORF3a95L95FttGttC17AY.1190.000035
ORF3a95L95FttGttT77AY.99.20.000645
ORF3a95L95FttGttT77B.1.3370.039106
ORF3a95L95FttGttT77B.230.020468
ORF3a95L95CtTGtGT56All0.000001
ORF3a95L95CtTGtGC16All0
ORF3a95L95StTgtCg66AY.1030.000037
ORF3a95L95WtTgtGg66AY.110.008032
ORF3a95L95StTgtCg66AY.260.00017
ORF3a95L95FttGttT66AY.4.2.10.000894
ORF3a95L95delTTG---66AY.430.000027
ORF3a95L95FttGttT66AY.470.000187
ORF3a95L95FttGttT66B.1.1.1760.002636
ORF3a95L95LttGttA66B.1.1600.000187
ORF3a95L95FttGttT66B.1.2210.000426
ORF3a95L95WtTgtGg66B.1.4290.000141
ORF3a95L95delTTG---66P.10.000095
ORF3a95L95QTTgCAg55All0.000001
ORF3a95L95FttGttT55AY.10.001979
ORF3a95L95FttGttT35AY.1160.00086
ORF3a95L95FttGttC25AY.1160.000574
ORF3a95L95StTgtCg55AY.160.001898
ORF3a95L95LttGttA45AY.30.00004
ORF3a95L95LTtgCtg15AY.30.00001
ORF3a95L95VTtGGtT35AY.430.000013
ORF3a95L95VTtGGtC15AY.430.000004
ORF3a95L95VTtgGtg15AY.430.000004
ORF3a95L95FttGttT55AY.60.000206
ORF3a95L95FttGttT55AY.70.00098
ORF3a95L95FttGttT55AY.980.000395
ORF3a95L95LttGttA55AY.98.10.000242
ORF3a95L95LttGttA55B.1.1310.04386
ORF3a95L95FttGttT55B.1.177.870.003639
ORF3a95L95FttGttT55B.1.258.170.00052
ORF3a95L95FttGttT55B.1.3110.001373
ORF3a95L95delTTG---55B.1.5250.000566
ORF3a95L95del2tTGt--44All0.000001
ORF3a95L95FttGttT44AY.1170.000338
ORF3a95L95StTgtCg44AY.1170.000338
ORF3a95L95MTtgAtg44AY.30.00004
ORF3a95L95FttGttT44AY.3.10.000341
ORF3a95L95LttGttA44AY.390.000099
ORF3a95L95delTTG---44AY.4.50.00043
ORF3a95L95FttGttT44AY.410.001176
ORF3a95L95LttGttA34AY.430.000013
ORF3a95L95LTtgCtg14AY.430.000004
ORF3a95L95FttGttT44AY.46.40.000658
ORF3a95L95StTgtCg44AY.980.000316
ORF3a95L95LttGttA44B.1.1.10.001307
ORF3a95L95MTtgAtg44B.1.1.70.000004
ORF3a95L95FttGttT44B.1.177.210.000306
ORF3a95L95FttGttT34B.1.5260.000071
ORF3a95L95FttGttC14B.1.5260.000024
ORF3a95L95FttGttT44B.1.5610.001588
ORF3a95L95FttGttT44B.1.5950.001044
ORF3a95L95delTTG---44P.1.150.000929
ORF3a95L95FttGttT33A.180.15
ORF3a95L95del1ttGtt-33All0.000001
ORF3a95L95YtTGtAT33All0.000001
ORF3a95L95DTTGGAT33All0.000001
ORF3a95L95RTTgAGg23All0
ORF3a95L95KTTgAAg23All0
ORF3a95L95ITtGAtT23All0
ORF3a95L95RTTGAGA13All0
ORF3a95L95ITtGAtC13All0
ORF3a95L95KTTGAAA13All0
ORF3a95L95StTgtCg33AY.1020.00008
ORF3a95L95StTgtCg33AY.1080.003308
ORF3a95L95FttGttT33AY.110.004016
ORF3a95L95FttGttT33AY.120.000948
ORF3a95L95StTgtCg33AY.1200.000112
ORF3a95L95delTTG---33AY.230.000209
ORF3a95L95delTTG---33AY.250.000018
ORF3a95L95FttGttT33AY.4.50.000322
ORF3a95L95StTgtCg33AY.420.000121
ORF3a95L95CtTGtGT33AY.430.000013
ORF3a95L95StTgtCg33AY.50.000062
ORF3a95L95FttGttT33AY.740.000347
ORF3a95L95StTgtCg33AY.900.002053
ORF3a95L95LTtgCtg33AY.980.000237
ORF3a95L95XtTgtAg33B.10.000027
ORF3a95L95QTTgCAg33B.10.000027
ORF3a95L95MTtgAtg33B.1.10.000054
ORF3a95L95LttGttA23B.1.10.000036
ORF3a95L95LTtgCtg13B.1.10.000018
ORF3a95L95FttGttT33B.1.1.2220.000612
ORF3a95L95VTtgGtg33B.1.1770.00004
ORF3a95L95LttGttA23B.1.2430.000139
ORF3a95L95LTtgCtg13B.1.2430.00007
ORF3a95L95FttGttT33B.1.36.290.001552
ORF3a95L95FttGttT33B.1.3670.002377
ORF3a95L95LttGttA33B.1.4270.000151
ORF3a95L95FttGttT33B.1.4680.017143
ORF3a95L95VTtgGtg33B.1.617.20.000011
ORF3a95L95delTTG---33B.1.6210.000266
ORF3a95L95FttGttT33B.1.6370.000219
ORF3a95L95LttGttA33B.1.80.005917
ORF3a95L95GTTgGGg23B.1.910.004149
ORF3a95L95ETTgGAg23B.1.910.004149
ORF3a95L95GTTGGGA13B.1.910.002075
ORF3a95L95ETTGGAA13B.1.910.002075
ORF3a95L95FttGttT33B.60.00273
ORF3a95L95StTgtCg33C.370.000348
ORF3a95L95FttGttT23D.20.00015
ORF3a95L95FttGttC13D.20.000075
ORF3a95L95LttGttA23P.10.000032
ORF3a95L95LTtgCtg13P.10.000016
ORF3a95L95FttGttT33P.1.100.000808
ORF3a95L95FttGttT33P.1.140.000143
ORF3a95L95VTtgGtg220.111111
ORF3a95L95delTTG---220.111111
ORF3a95L95LttGttA22AY.1020.000053
ORF3a95L95StTgtCg22AY.1090.001479
ORF3a95L95StTgtCg22AY.1110.000366
ORF3a95L95FttGttT22AY.16.10.00094
ORF3a95L95StTgtCg22AY.230.000139
ORF3a95L95FttGttT22AY.240.000862
ORF3a95L95FttGttT22AY.270.000129
ORF3a95L95DTTGGAT22AY.430.000009
ORF3a95L95YtTGtAT22AY.430.000009
ORF3a95L95ITtGAtC12AY.430.000004
ORF3a95L95ITtGAtT12AY.430.000004
ORF3a95L95delTTG---22AY.440.000012
ORF3a95L95FttGttT22AY.450.000243
ORF3a95L95LttGttA22AY.460.000208
ORF3a95L95StTgtCg22AY.470.000062
ORF3a95L95FttGttT22AY.480.00093
ORF3a95L95StTgtCg22AY.510.001818
ORF3a95L95FttGttT22AY.560.00321
ORF3a95L95FttGttT22AY.570.001312
ORF3a95L95LTtgCtg22AY.60.000082
ORF3a95L95FttGttT22AY.610.00021
ORF3a95L95FttGttT22AY.7.10.000225
ORF3a95L95FttGttT22AY.700.000417
ORF3a95L95FttGttT22AY.75.10.000361
ORF3a95L95LttGttA22AY.90.000135
ORF3a95L95StTgtCg22AY.920.000575
ORF3a95L95VTtGGtT12AY.98.10.000048
ORF3a95L95VTtgGtg12AY.98.10.000048
ORF3a95L95StTgtCg22B.10.000018
ORF3a95L95WtTgtGg22B.10.000018
ORF3a95L95VTtgGtg22B.10.000018
ORF3a95L95FttGttT22B.1.1.10.000653
ORF3a95L95LttGttA22B.1.1.2290.011494
ORF3a95L95delTTG---22B.1.1.3150.016949
ORF3a95L95LTtgCtg22B.1.1.4160.00181
ORF3a95L95StTgtCg22B.1.1.5190.000079
ORF3a95L95GTTgGGg22B.1.1.70.000002
ORF3a95L95XtTGtAA12B.1.1.70.000001
ORF3a95L95XtTgtAg12B.1.1.70.000001
ORF3a95L95FttGttT22B.1.1.700.000682
ORF3a95L95StTgtCg22B.1.140.035088
ORF3a95L95FttGttT22B.1.177.600.000437
ORF3a95L95StTgtCg22B.1.177.750.002081
ORF3a95L95FttGttT22B.1.177.810.000379
ORF3a95L95delTTG---22B.1.20.000018
ORF3a95L95StTgtCg22B.1.20.000018
ORF3a95L95FttGttT22B.1.2580.000133
ORF3a95L95VTtgGtg22B.1.2580.000133
ORF3a95L95FttGttT22B.1.36.380.003284
ORF3a95L95FttGttT22B.1.4270.000101
ORF3a95L95FttGttT22B.1.5960.000174
ORF3a95L95delTTG---22B.1.617.20.000008
ORF3a95L95FttGttT22B.1.6260.011429
ORF3a95L95RTTgAGg12B.1.910.002075
ORF3a95L95KTTGAAA12B.1.910.002075
ORF3a95L95RTTGAGA12B.1.910.002075
ORF3a95L95KTTgAAg12B.1.910.002075
ORF3a95L95FttGttT22C.10.004785
ORF3a95L95delTTG---22C.370.000232
ORF3a95L95ETTgGAg22P.10.000032
ORF3a95L95VTtgGtg22P.10.000032
ORF3a95L95StTgtCg22P.1.120.000968
ORF3a95L95VTtgGtg22P.20.000373
ORF3a95L95FttGttT22P.20.000373
ORF3a95L95FttGttT22Q.80.00033
ORF3a95L95FttGttC22R.10.00018
ORF3a95L95delTTG---11A0.000387
ORF3a95L95FttGttT11A.10.000282
ORF3a95L95delTTG---11AD.20.000219
ORF3a95L95FttGttT11AE.80.000489
ORF3a95L95delTTG---11AH.30.003802
ORF3a95L95PTTGCCT11All0
ORF3a95L95delTTG---11AV.10.005051
ORF3a95L95FttGttT11AY.100.00053
ORF3a95L95delTTG---11AY.1000.000046
ORF3a95L95LttGttA11AY.1000.000046
ORF3a95L95FttGttT11AY.1040.001984
ORF3a95L95FttGttT11AY.1060.000335
ORF3a95L95delTTG---11AY.1080.001103
ORF3a95L95delTTG---11AY.1100.000113
ORF3a95L95delTTG---11AY.1110.000183
ORF3a95L95delTTG---11AY.1130.000142
ORF3a95L95FttGttT11AY.1130.000142
ORF3a95L95LttGttA11AY.1140.000231
ORF3a95L95FttGttT11AY.1140.000231
ORF3a95L95LTtgCtg11AY.1170.000085
ORF3a95L95CtTGtGC11AY.1180.000063
ORF3a95L95StTgtCg11AY.1180.000063
ORF3a95L95LttGttA11AY.1190.000035
ORF3a95L95LTtgCtg11AY.1200.000037
ORF3a95L95FttGttT11AY.120.2.10.000498
ORF3a95L95StTgtCg11AY.1210.000135
ORF3a95L95FttGttT11AY.1210.000135
ORF3a95L95FttGttT11AY.160.00038
ORF3a95L95delTTG---11AY.200.000039
ORF3a95L95LttGttA11AY.210.001898
ORF3a95L95VTtgGtg11AY.230.00007
ORF3a95L95LttGttA11AY.230.00007
ORF3a95L95delTTG---11AY.290.000016
ORF3a95L95StTgtCg11AY.30.00001
ORF3a95L95KTTgAAg11AY.300.000396
ORF3a95L95ETTgGAg11AY.300.000396
ORF3a95L95GTTgGGg11AY.300.000396
ORF3a95L95VTtgGtg11AY.300.000396
ORF3a95L95RTTgAGg11AY.300.000396
ORF3a95L95WtTgtGg11AY.300.000396
ORF3a95L95XtTgtAg11AY.300.000396
ORF3a95L95StTgtCg11AY.320.000532
ORF3a95L95delTTG---11AY.34.10.00051
ORF3a95L95FttGttT11AY.34.10.00051
ORF3a95L95delTTG---11AY.350.000233
ORF3a95L95delTTG---11AY.360.000148
ORF3a95L95FttGttT11AY.370.000316
ORF3a95L95CtTGtGT11AY.390.000025
ORF3a95L95delTTG---11AY.390.000025
ORF3a95L95VTtgGtg11AY.40.000002
ORF3a95L95FttGttT11AY.4.10.000737
ORF3a95L95LttGttA11AY.4.20.000022
ORF3a95L95StTgtCg11AY.4.20.000022
ORF3a95L95VTtgGtg11AY.4.20.000022
ORF3a95L95delTTG---11AY.4.20.000022
ORF3a95L95XtTgtAg11AY.4.20.000022
ORF3a95L95StTgtCg11AY.4.50.000107
ORF3a95L95VTtgGtg11AY.420.00004
ORF3a95L95MTtgAtg11AY.420.00004
ORF3a95L95ETTgGAg11AY.430.000004
ORF3a95L95del2tTGt--11AY.430.000004
ORF3a95L95XtTgtAg11AY.430.000004
ORF3a95L95VTtgGtg11AY.440.000006
ORF3a95L95FttGttT11AY.46.50.000198
ORF3a95L95FttGttT11AY.46.60.000072
ORF3a95L95StTgtCg11AY.5.30.000337
ORF3a95L95VTtgGtg11AY.5.40.000277
ORF3a95L95LttGttA11AY.5.40.000277
ORF3a95L95delTTG---11AY.520.000814
ORF3a95L95FttGttT11AY.520.000814
ORF3a95L95LTtgCtg11AY.520.000814
ORF3a95L95FttGttT11AY.540.000095
ORF3a95L95LttGttA11AY.590.00053
ORF3a95L95FttGttT11AY.590.00053
ORF3a95L95VTtgGtg11AY.590.00053
ORF3a95L95FttGttT11AY.600.000938
ORF3a95L95StTgtCg11AY.620.000436
ORF3a95L95WtTgtGg11AY.620.000436
ORF3a95L95FttGttT11AY.630.000387
ORF3a95L95FttGttT11AY.640.000595
ORF3a95L95FttGttT11AY.670.000464
ORF3a95L95FttGttT11AY.680.000274
ORF3a95L95delTTG---11AY.680.000274
ORF3a95L95WtTgtGg11AY.690.000187
ORF3a95L95LTtgCtg11AY.740.000116
ORF3a95L95StTgtCg11AY.750.000056
ORF3a95L95LTtGCtA11AY.750.000056
ORF3a95L95WtTgtGg11AY.770.001127
ORF3a95L95FttGttT11AY.780.001541
ORF3a95L95LttGttA11AY.810.001992
ORF3a95L95LTtgCtg11AY.840.000437
ORF3a95L95StTgtCg11AY.890.004902
ORF3a95L95FttGttT11AY.90.000068
ORF3a95L95FttGttT11AY.920.000287
ORF3a95L95YtTGtAT11AY.98.10.000048
ORF3a95L95ETTgGAg11AY.98.10.000048
ORF3a95L95DTTGGAT11AY.98.10.000048
ORF3a95L95XtTgtAg11AY.98.10.000048
ORF3a95L95StTgtCg11AY.990.001049
ORF3a95L95StTgtCg11AY.99.20.000092
ORF3a95L95LTtgCtg11AY.99.20.000092
ORF3a95L95FttGttT11B0.000128
ORF3a95L95delTTG---11B0.000128
ORF3a95L95del1ttGtt-11B.10.000009
ORF3a95L95PTTGCCT11B.10.000009
ORF3a95L95GTTgGGg11B.1.10.000018
ORF3a95L95StTgtCg11B.1.1.100.001115
ORF3a95L95delTTG---11B.1.1.1010.01
ORF3a95L95FttGttT11B.1.1.1570.000913
ORF3a95L95FttGttT11B.1.1.1740.003378
ORF3a95L95FttGttT11B.1.1.1890.001513
ORF3a95L95VTtgGtg11B.1.1.1940.00495
ORF3a95L95del1ttGtt-11B.1.1.2160.00089
ORF3a95L95FttGttT11B.1.1.2370.005405
ORF3a95L95FttGttT11B.1.1.2410.00207
ORF3a95L95FttGttT11B.1.1.2720.005208
ORF3a95L95FttGttT11B.1.1.2820.011628
ORF3a95L95FttGttT11B.1.1.2840.000107
ORF3a95L95FttGttT11B.1.1.2880.001916
ORF3a95L95FttGttT11B.1.1.3060.000438
ORF3a95L95FttGttT11B.1.1.3070.002532
ORF3a95L95FttGttT11B.1.1.3170.000412
ORF3a95L95ETTgGAg11B.1.1.330.000421
ORF3a95L95VTtgGtg11B.1.1.330.000421
ORF3a95L95FttGttT11B.1.1.3620.005618
ORF3a95L95MTtgAtg11B.1.1.3700.012658
ORF3a95L95LttGttA11B.1.1.3740.002375
ORF3a95L95MTtgAtg11B.1.1.3970.002252
ORF3a95L95delTTG---11B.1.1.4090.002833
ORF3a95L95delTTG---11B.1.1.4200.001006
ORF3a95L95LTtgCtg11B.1.1.5190.00004
ORF3a95L95VTtgGtg11B.1.1.5190.00004
ORF3a95L95FttGttT11B.1.1.5280.004808
ORF3a95L95delTTG---11B.1.1400.018868
ORF3a95L95QTTgCAg11B.1.1570.002985
ORF3a95L95FttGttT11B.1.1580.02381
ORF3a95L95delTTG---11B.1.1600.000031
ORF3a95L95LttGttA11B.1.1770.000013
ORF3a95L95XtTgtAg11B.1.1770.000013
ORF3a95L95LTtgCtg11B.1.177.210.000076
ORF3a95L95FttGttT11B.1.177.440.000519
ORF3a95L95delTTG---11B.1.177.510.004566
ORF3a95L95XtTgtAg11B.1.177.600.000218
ORF3a95L95delTTG---11B.1.177.620.001192
ORF3a95L95VTtgGtg11B.1.177.630.002703
ORF3a95L95FttGttT11B.1.177.70.000165
ORF3a95L95VTtgGtg11B.1.177.80.000752
ORF3a95L95FttGttT11B.1.177.830.001481
ORF3a95L95LTtGCtA11B.1.1790.003759
ORF3a95L95XtTgtAg11B.1.20.000009
ORF3a95L95del2tTGt--11B.1.20.000009
ORF3a95L95VTtgGtg11B.1.20.000009
ORF3a95L95FttGttT11B.1.2270.047619
ORF3a95L95FttGttT11B.1.2360.002053
ORF3a95L95FttGttT11B.1.2430.00007
ORF3a95L95FttGttT11B.1.258.30.001675
ORF3a95L95LTtGCtA11B.1.2600.003344
ORF3a95L95FttGttT11B.1.3130.006579
ORF3a95L95GTTGGGT11B.1.3510.00003
ORF3a95L95del2tTGt--11B.1.360.000146
ORF3a95L95CtTGtGT11B.1.360.000146
ORF3a95L95LttGttA11B.1.360.000146
ORF3a95L95LTtGCtA11B.1.36.80.001
ORF3a95L95del2tTGt--11B.1.36.80.001
ORF3a95L95delTTG---11B.1.3620.001541
ORF3a95L95FttGttT11B.1.3690.000285
ORF3a95L95MTtgAtg11B.1.4000.000429
ORF3a95L95delTTG---11B.1.416.10.001563
ORF3a95L95ITtGAtT11B.1.438.10.000107
ORF3a95L95FttGttT11B.1.4390.005917
ORF3a95L95FttGttT11B.1.4530.003236
ORF3a95L95LttGttA11B.1.4970.000315
ORF3a95L95FttGttT11B.1.4970.000315
ORF3a95L95FttGttT11B.1.4990.00105
ORF3a95L95LttGttA11B.1.5170.000427
ORF3a95L95FttGttT11B.1.5230.002451
ORF3a95L95VTtgGtg11B.1.5260.000024
ORF3a95L95LTtGCtA11B.1.5370.02
ORF3a95L95FttGttT11B.1.5640.000426
ORF3a95L95LttGttA11B.1.5750.000303
ORF3a95L95del1ttGtt-11B.1.5800.004065
ORF3a95L95LttGttA11B.1.5820.000491
ORF3a95L95FttGttT11B.1.5880.00091
ORF3a95L95delTTG---11B.1.5960.000087
ORF3a95L95FttGttT11B.1.6090.000479
ORF3a95L95delTTG---11B.1.617.10.000129
ORF3a95L95FttGttT11B.1.617.10.000129
ORF3a95L95VTtgGtg11B.1.617.10.000129
ORF3a95L95StTgtCg11B.1.617.10.000129
ORF3a95L95QTTgCAg11B.1.617.20.000004
ORF3a95L95XtTgtAg11B.1.617.20.000004
ORF3a95L95FttGttT11B.1.6180.004032
ORF3a95L95LttGttA11B.1.6210.000089
ORF3a95L95FttGttT11B.1.6210.000089
ORF3a95L95StTgtCg11B.1.6270.00202
ORF3a95L95FttGttT11B.1.6270.00202
ORF3a95L95delTTG---11B.1.6380.052632
ORF3a95L95FttGttT11B.280.003279
ORF3a95L95FttGttT11B.4.50.011905
ORF3a95L95LttGttA11B.400.000364
ORF3a95L95FttGttT11C.1.20.004255
ORF3a95L95FttGttT11C.260.007353
ORF3a95L95VTtgGtg11C.360.000911
ORF3a95L95FttGttT11C.370.000116
ORF3a95L95XtTgtAg11D.20.000075
ORF3a95L95LTtgCtg11D.20.000075
ORF3a95L95FttGttT11M.10.023256
ORF3a95L95FttGttT11N.40.004255
ORF3a95L95FttGttT11N.50.001767
ORF3a95L95GTTgGGg11P.10.000016
ORF3a95L95LttGttA11P.1.10.000318
ORF3a95L95FttGttT11P.1.150.000232
ORF3a95L95LttGttA11P.1.150.000232
ORF3a95L95GTTgGGg11P.1.170.000162
ORF3a95L95FttGttT11P.70.004367
ORF3a95L95FttGttT11Q.10.000126
ORF3a95L95FttGttT11Q.30.000145
ORF3a95L95delTTG---11Q.40.000455
ORF3a95L95delTTG---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.