CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 95 | L95F | nonsyn | ttG | ttT | 13431 | 13413 | 0.99866 | 25675-25677 | |
ORF3a | 95 | L95F | nonsyn | ttG | ttC | 13431 | 18 | 0.00134018 | 25675-25677 | |
ORF3a | 95 | L95S | nonsyn | tTg | tCg | 3314 | 3313 | 0.999698 | 25675-25677 | |
ORF3a | 95 | L95S | nonsyn | tTG | tCT | 3314 | 1 | 0.00030175 | 25675-25677 | |
ORF3a | 95 | L95L | syn | ttG | ttA | 787 | 568 | 0.721728 | 25675-25677 | |
ORF3a | 95 | L95L | syn | Ttg | Ctg | 787 | 194 | 0.246506 | 25675-25677 | |
ORF3a | 95 | L95L | syn | TtG | CtA | 787 | 25 | 0.0317662 | 25675-25677 | |
ORF3a | 95 | L95W | nonsyn | tTg | tGg | 243 | 243 | 1 | 25675-25677 | |
ORF3a | 95 | L95M | nonsyn | Ttg | Atg | 195 | 195 | 1 | 25675-25677 | |
ORF3a | 95 | L95V | nonsyn | Ttg | Gtg | 145 | 140 | 0.965517 | 25675-25677 | |
ORF3a | 95 | L95V | nonsyn | TtG | GtT | 145 | 4 | 0.0275862 | 25675-25677 | |
ORF3a | 95 | L95V | nonsyn | TtG | GtC | 145 | 1 | 0.00689655 | 25675-25677 | |
ORF3a | 95 | L95del | del | TTG | --- | 131 | 131 | 1 | 25675-25677 | |
ORF3a | 95 | L95X | nonsyn | tTg | tAg | 14 | 13 | 0.928571 | 25675-25677 | |
ORF3a | 95 | L95X | nonsyn | tTG | tAA | 14 | 1 | 0.0714286 | 25675-25677 | |
ORF3a | 95 | L95G | nonsyn | TTg | GGg | 10 | 8 | 0.8 | 25675-25677 | |
ORF3a | 95 | L95G | nonsyn | TTG | GGT | 10 | 1 | 0.1 | 25675-25677 | |
ORF3a | 95 | L95G | nonsyn | TTG | GGA | 10 | 1 | 0.1 | 25675-25677 | |
ORF3a | 95 | L95E | nonsyn | TTg | GAg | 9 | 8 | 0.888889 | 25675-25677 | |
ORF3a | 95 | L95E | nonsyn | TTG | GAA | 9 | 1 | 0.111111 | 25675-25677 | |
ORF3a | 95 | L95C | nonsyn | tTG | tGT | 6 | 5 | 0.833333 | 25675-25677 | |
ORF3a | 95 | L95C | nonsyn | tTG | tGC | 6 | 1 | 0.166667 | 25675-25677 | |
ORF3a | 95 | L95Q | nonsyn | TTg | CAg | 5 | 5 | 1 | 25675-25677 | |
ORF3a | 95 | L95del2 | del | tTG | t-- | 4 | 4 | 1 | 25675-25677 | |
ORF3a | 95 | L95Y | nonsyn | tTG | tAT | 3 | 3 | 1 | 25675-25677 | |
ORF3a | 95 | L95del1 | del | ttG | tt- | 3 | 3 | 1 | 25675-25677 | |
ORF3a | 95 | L95D | nonsyn | TTG | GAT | 3 | 3 | 1 | 25675-25677 | |
ORF3a | 95 | L95I | nonsyn | TtG | AtT | 3 | 2 | 0.666667 | 25675-25677 | |
ORF3a | 95 | L95R | nonsyn | TTg | AGg | 3 | 2 | 0.666667 | 25675-25677 | |
ORF3a | 95 | L95K | nonsyn | TTg | AAg | 3 | 2 | 0.666667 | 25675-25677 | |
ORF3a | 95 | L95I | nonsyn | TtG | AtC | 3 | 1 | 0.333333 | 25675-25677 | |
ORF3a | 95 | L95R | nonsyn | TTG | AGA | 3 | 1 | 0.333333 | 25675-25677 | |
ORF3a | 95 | L95K | nonsyn | TTG | AAA | 3 | 1 | 0.333333 | 25675-25677 | |
ORF3a | 95 | L95P | nonsyn | TTG | CCT | 1 | 1 | 1 | 25675-25677 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 95 | L95F | ttG | ttT | 13413 | 13431 | All | 0.002565 |
ORF3a | 95 | L95F | ttG | ttC | 18 | 13431 | All | 0.000003 |
ORF3a | 95 | L95F | ttG | ttT | 9245 | 9245 | B.1.438.1 | 0.991634 |
ORF3a | 95 | L95S | tTg | tCg | 3313 | 3314 | All | 0.000634 |
ORF3a | 95 | L95S | tTG | tCT | 1 | 3314 | All | 0 |
ORF3a | 95 | L95S | tTg | tCg | 2883 | 2883 | AY.39 | 0.071243 |
ORF3a | 95 | L95L | ttG | ttA | 568 | 787 | All | 0.000109 |
ORF3a | 95 | L95L | Ttg | Ctg | 194 | 787 | All | 0.000037 |
ORF3a | 95 | L95L | TtG | CtA | 25 | 787 | All | 0.000005 |
ORF3a | 95 | L95F | ttG | ttT | 737 | 741 | B.1.1.7 | 0.00066 |
ORF3a | 95 | L95F | ttG | ttC | 4 | 741 | B.1.1.7 | 0.000004 |
ORF3a | 95 | L95F | ttG | ttT | 626 | 627 | AY.4 | 0.000974 |
ORF3a | 95 | L95F | ttG | ttC | 1 | 627 | AY.4 | 0.000002 |
ORF3a | 95 | L95F | ttG | ttT | 487 | 487 | B.1.177.45 | 0.185665 |
ORF3a | 95 | L95L | ttG | ttA | 340 | 346 | AY.4 | 0.000529 |
ORF3a | 95 | L95L | Ttg | Ctg | 6 | 346 | AY.4 | 0.000009 |
ORF3a | 95 | L95W | tTg | tGg | 243 | 243 | All | 0.000046 |
ORF3a | 95 | L95W | tTg | tGg | 225 | 225 | AY.47 | 0.006999 |
ORF3a | 95 | L95M | Ttg | Atg | 195 | 195 | All | 0.000037 |
ORF3a | 95 | L95F | ttG | ttT | 188 | 188 | B.1.617.2 | 0.000708 |
ORF3a | 95 | L95M | Ttg | Atg | 162 | 162 | AT.1 | 0.830769 |
ORF3a | 95 | L95V | Ttg | Gtg | 140 | 145 | All | 0.000027 |
ORF3a | 95 | L95V | TtG | GtT | 4 | 145 | All | 0.000001 |
ORF3a | 95 | L95V | TtG | GtC | 1 | 145 | All | 0 |
ORF3a | 95 | L95F | ttG | ttT | 143 | 143 | AY.103 | 0.000888 |
ORF3a | 95 | L95F | ttG | ttT | 131 | 132 | AY.44 | 0.000797 |
ORF3a | 95 | L95F | ttG | ttC | 1 | 132 | AY.44 | 0.000006 |
ORF3a | 95 | L95del | TTG | --- | 131 | 131 | All | 0.000025 |
ORF3a | 95 | L95L | ttG | ttA | 93 | 128 | B.1.1.7 | 0.000083 |
ORF3a | 95 | L95L | Ttg | Ctg | 24 | 128 | B.1.1.7 | 0.000021 |
ORF3a | 95 | L95L | TtG | CtA | 11 | 128 | B.1.1.7 | 0.00001 |
ORF3a | 95 | L95F | ttG | ttT | 119 | 119 | B.1.1.214 | 0.006599 |
ORF3a | 95 | L95F | ttG | ttT | 104 | 104 | AY.118 | 0.006515 |
ORF3a | 95 | L95F | ttG | ttT | 101 | 102 | B.1.2 | 0.000889 |
ORF3a | 95 | L95F | ttG | ttC | 1 | 102 | B.1.2 | 0.000009 |
ORF3a | 95 | L95F | ttG | ttT | 98 | 98 | AY.43 | 0.000434 |
ORF3a | 95 | L95F | ttG | ttT | 87 | 87 | AY.36 | 0.012895 |
ORF3a | 95 | L95F | ttG | ttT | 82 | 82 | AY.102 | 0.002174 |
ORF3a | 95 | L95L | Ttg | Ctg | 74 | 81 | AY.44 | 0.00045 |
ORF3a | 95 | L95L | ttG | ttA | 7 | 81 | AY.44 | 0.000043 |
ORF3a | 95 | L95S | tTg | tCg | 79 | 79 | AY.43 | 0.00035 |
ORF3a | 95 | L95F | ttG | ttT | 70 | 71 | AY.25 | 0.000421 |
ORF3a | 95 | L95F | ttG | ttC | 1 | 71 | AY.25 | 0.000006 |
ORF3a | 95 | L95F | ttG | ttT | 69 | 70 | B.1.1 | 0.001252 |
ORF3a | 95 | L95F | ttG | ttC | 1 | 70 | B.1.1 | 0.000018 |
ORF3a | 95 | L95S | tTg | tCg | 65 | 65 | AY.25 | 0.000391 |
ORF3a | 95 | L95F | ttG | ttT | 62 | 62 | B.1.438 | 0.405229 |
ORF3a | 95 | L95F | ttG | ttT | 59 | 59 | B.1 | 0.00054 |
ORF3a | 95 | L95V | Ttg | Gtg | 58 | 58 | AY.25 | 0.000349 |
ORF3a | 95 | L95F | ttG | ttT | 55 | 55 | AY.100 | 0.00253 |
ORF3a | 95 | L95S | tTg | tCg | 55 | 55 | B.1.617.2 | 0.000207 |
ORF3a | 95 | L95S | tTg | tCg | 52 | 52 | AY.39.1 | 0.00206 |
ORF3a | 95 | L95F | ttG | ttT | 52 | 52 | B.1.438.2 | 1 |
ORF3a | 95 | L95V | Ttg | Gtg | 47 | 47 | B.1.1.7 | 0.000042 |
ORF3a | 95 | L95F | ttG | ttT | 43 | 43 | AY.13 | 0.006922 |
ORF3a | 95 | L95F | ttG | ttT | 43 | 43 | AY.3 | 0.000428 |
ORF3a | 95 | L95F | ttG | ttT | 36 | 36 | AY.42 | 0.001448 |
ORF3a | 95 | L95F | ttG | ttT | 32 | 32 | AY.4.2 | 0.000694 |
ORF3a | 95 | L95del | TTG | --- | 31 | 31 | B.1.1.7 | 0.000028 |
ORF3a | 95 | L95F | ttG | ttT | 31 | 31 | P.1 | 0.000488 |
ORF3a | 95 | L95S | tTg | tCg | 29 | 29 | B.1.1.170 | 0.03616 |
ORF3a | 95 | L95L | ttG | ttA | 15 | 28 | B.1.617.2 | 0.000056 |
ORF3a | 95 | L95L | Ttg | Ctg | 12 | 28 | B.1.617.2 | 0.000045 |
ORF3a | 95 | L95L | TtG | CtA | 1 | 28 | B.1.617.2 | 0.000004 |
ORF3a | 95 | L95F | ttG | ttT | 22 | 23 | B.1.177 | 0.00029 |
ORF3a | 95 | L95F | ttG | ttC | 1 | 23 | B.1.177 | 0.000013 |
ORF3a | 95 | L95F | ttG | ttT | 22 | 22 | AY.116.1 | 0.006851 |
ORF3a | 95 | L95L | Ttg | Ctg | 14 | 22 | B.1.2 | 0.000123 |
ORF3a | 95 | L95L | ttG | ttA | 8 | 22 | B.1.2 | 0.00007 |
ORF3a | 95 | L95F | ttG | ttT | 20 | 20 | Q.7 | 0.022222 |
ORF3a | 95 | L95S | tTg | tCg | 19 | 19 | AY.101 | 0.009318 |
ORF3a | 95 | L95F | ttG | ttT | 19 | 19 | B.1.1.519 | 0.000755 |
ORF3a | 95 | L95F | ttG | ttT | 18 | 18 | AY.33 | 0.001202 |
ORF3a | 95 | L95F | ttG | ttT | 17 | 17 | AY.109 | 0.012574 |
ORF3a | 95 | L95F | ttG | ttT | 16 | 16 | B.1.351 | 0.000476 |
ORF3a | 95 | L95F | ttG | ttT | 15 | 15 | AY.98.1 | 0.000726 |
ORF3a | 95 | L95F | ttG | ttT | 15 | 15 | B.1.1.401 | 1 |
ORF3a | 95 | L95X | tTg | tAg | 13 | 14 | All | 0.000002 |
ORF3a | 95 | L95X | tTG | tAA | 1 | 14 | All | 0 |
ORF3a | 95 | L95F | ttG | ttT | 14 | 14 | AY.34 | 0.001358 |
ORF3a | 95 | L95L | Ttg | Ctg | 13 | 13 | AY.103 | 0.000081 |
ORF3a | 95 | L95F | ttG | ttT | 13 | 13 | AY.120 | 0.000483 |
ORF3a | 95 | L95F | ttG | ttT | 13 | 13 | AY.120.2 | 0.01671 |
ORF3a | 95 | L95F | ttG | ttT | 13 | 13 | AY.26 | 0.000368 |
ORF3a | 95 | L95S | tTg | tCg | 13 | 13 | AY.44 | 0.000079 |
ORF3a | 95 | L95F | ttG | ttT | 13 | 13 | AY.5 | 0.000268 |
ORF3a | 95 | L95L | TtG | CtA | 6 | 13 | B.1 | 0.000055 |
ORF3a | 95 | L95L | Ttg | Ctg | 6 | 13 | B.1 | 0.000055 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 13 | B.1 | 0.000009 |
ORF3a | 95 | L95F | ttG | ttT | 13 | 13 | B.1.429 | 0.000306 |
ORF3a | 95 | L95F | ttG | ttT | 13 | 13 | B.1.438.3 | 1 |
ORF3a | 95 | L95F | ttG | ttT | 12 | 12 | AY.101 | 0.005885 |
ORF3a | 95 | L95F | ttG | ttT | 12 | 12 | AY.20 | 0.000466 |
ORF3a | 95 | L95F | ttG | ttT | 12 | 12 | AY.23 | 0.000837 |
ORF3a | 95 | L95L | ttG | ttA | 11 | 12 | AY.33 | 0.000735 |
ORF3a | 95 | L95L | Ttg | Ctg | 1 | 12 | AY.33 | 0.000067 |
ORF3a | 95 | L95F | ttG | ttT | 11 | 12 | AY.39 | 0.000272 |
ORF3a | 95 | L95F | ttG | ttC | 1 | 12 | AY.39 | 0.000025 |
ORF3a | 95 | L95S | tTg | tCg | 11 | 12 | AY.4 | 0.000017 |
ORF3a | 95 | L95S | tTG | tCT | 1 | 12 | AY.4 | 0.000002 |
ORF3a | 95 | L95F | ttG | ttT | 12 | 12 | AY.9.2 | 0.000441 |
ORF3a | 95 | L95del | TTG | --- | 12 | 12 | B.1 | 0.00011 |
ORF3a | 95 | L95S | tTg | tCg | 12 | 12 | P.1 | 0.000189 |
ORF3a | 95 | L95F | ttG | ttT | 11 | 11 | AY.75 | 0.000616 |
ORF3a | 95 | L95L | Ttg | Ctg | 11 | 11 | AY.9.2 | 0.000404 |
ORF3a | 95 | L95G | TTg | GGg | 8 | 10 | All | 0.000002 |
ORF3a | 95 | L95G | TTG | GGA | 1 | 10 | All | 0 |
ORF3a | 95 | L95G | TTG | GGT | 1 | 10 | All | 0 |
ORF3a | 95 | L95L | ttG | ttA | 9 | 10 | AY.25 | 0.000054 |
ORF3a | 95 | L95L | Ttg | Ctg | 1 | 10 | AY.25 | 0.000006 |
ORF3a | 95 | L95F | ttG | ttT | 10 | 10 | AY.39.1 | 0.000396 |
ORF3a | 95 | L95F | ttG | ttT | 10 | 10 | AY.46 | 0.001041 |
ORF3a | 95 | L95M | Ttg | Atg | 10 | 10 | B.1.1.305 | 0.03861 |
ORF3a | 95 | L95S | tTg | tCg | 10 | 10 | B.1.1.7 | 0.000009 |
ORF3a | 95 | L95F | ttG | ttT | 10 | 10 | B.1.396 | 0.007057 |
ORF3a | 95 | L95E | TTg | GAg | 8 | 9 | All | 0.000002 |
ORF3a | 95 | L95E | TTG | GAA | 1 | 9 | All | 0 |
ORF3a | 95 | L95L | ttG | ttA | 9 | 9 | AY.109 | 0.006657 |
ORF3a | 95 | L95F | ttG | ttT | 9 | 9 | AY.5.3 | 0.003036 |
ORF3a | 95 | L95F | ttG | ttT | 9 | 9 | B.1.1.153 | 0.009858 |
ORF3a | 95 | L95F | ttG | ttT | 9 | 9 | B.1.160 | 0.000281 |
ORF3a | 95 | L95del | TTG | --- | 9 | 9 | B.1.177 | 0.000119 |
ORF3a | 95 | L95L | Ttg | Ctg | 9 | 9 | Q.4 | 0.004093 |
ORF3a | 95 | L95F | ttG | ttT | 8 | 8 | AY.29 | 0.000126 |
ORF3a | 95 | L95M | Ttg | Atg | 8 | 8 | B.1 | 0.000073 |
ORF3a | 95 | L95F | ttG | ttT | 8 | 8 | B.1.1.231 | 0.024768 |
ORF3a | 95 | L95F | ttG | ttT | 8 | 8 | B.1.1.265 | 0.025237 |
ORF3a | 95 | L95F | ttG | ttT | 8 | 8 | B.1.1.416 | 0.00724 |
ORF3a | 95 | L95F | ttG | ttT | 8 | 8 | B.1.36 | 0.001167 |
ORF3a | 95 | L95F | ttG | ttT | 8 | 8 | B.1.575 | 0.002427 |
ORF3a | 95 | L95L | ttG | ttA | 4 | 8 | B.1.617.1 | 0.000516 |
ORF3a | 95 | L95L | Ttg | Ctg | 2 | 8 | B.1.617.1 | 0.000258 |
ORF3a | 95 | L95L | TtG | CtA | 2 | 8 | B.1.617.1 | 0.000258 |
ORF3a | 95 | L95F | ttG | ttT | 6 | 7 | AY.119 | 0.000212 |
ORF3a | 95 | L95F | ttG | ttC | 1 | 7 | AY.119 | 0.000035 |
ORF3a | 95 | L95F | ttG | ttT | 7 | 7 | AY.99.2 | 0.000645 |
ORF3a | 95 | L95F | ttG | ttT | 7 | 7 | B.1.337 | 0.039106 |
ORF3a | 95 | L95F | ttG | ttT | 7 | 7 | B.23 | 0.020468 |
ORF3a | 95 | L95C | tTG | tGT | 5 | 6 | All | 0.000001 |
ORF3a | 95 | L95C | tTG | tGC | 1 | 6 | All | 0 |
ORF3a | 95 | L95S | tTg | tCg | 6 | 6 | AY.103 | 0.000037 |
ORF3a | 95 | L95W | tTg | tGg | 6 | 6 | AY.11 | 0.008032 |
ORF3a | 95 | L95S | tTg | tCg | 6 | 6 | AY.26 | 0.00017 |
ORF3a | 95 | L95F | ttG | ttT | 6 | 6 | AY.4.2.1 | 0.000894 |
ORF3a | 95 | L95del | TTG | --- | 6 | 6 | AY.43 | 0.000027 |
ORF3a | 95 | L95F | ttG | ttT | 6 | 6 | AY.47 | 0.000187 |
ORF3a | 95 | L95F | ttG | ttT | 6 | 6 | B.1.1.176 | 0.002636 |
ORF3a | 95 | L95L | ttG | ttA | 6 | 6 | B.1.160 | 0.000187 |
ORF3a | 95 | L95F | ttG | ttT | 6 | 6 | B.1.221 | 0.000426 |
ORF3a | 95 | L95W | tTg | tGg | 6 | 6 | B.1.429 | 0.000141 |
ORF3a | 95 | L95del | TTG | --- | 6 | 6 | P.1 | 0.000095 |
ORF3a | 95 | L95Q | TTg | CAg | 5 | 5 | All | 0.000001 |
ORF3a | 95 | L95F | ttG | ttT | 5 | 5 | AY.1 | 0.001979 |
ORF3a | 95 | L95F | ttG | ttT | 3 | 5 | AY.116 | 0.00086 |
ORF3a | 95 | L95F | ttG | ttC | 2 | 5 | AY.116 | 0.000574 |
ORF3a | 95 | L95S | tTg | tCg | 5 | 5 | AY.16 | 0.001898 |
ORF3a | 95 | L95L | ttG | ttA | 4 | 5 | AY.3 | 0.00004 |
ORF3a | 95 | L95L | Ttg | Ctg | 1 | 5 | AY.3 | 0.00001 |
ORF3a | 95 | L95V | TtG | GtT | 3 | 5 | AY.43 | 0.000013 |
ORF3a | 95 | L95V | TtG | GtC | 1 | 5 | AY.43 | 0.000004 |
ORF3a | 95 | L95V | Ttg | Gtg | 1 | 5 | AY.43 | 0.000004 |
ORF3a | 95 | L95F | ttG | ttT | 5 | 5 | AY.6 | 0.000206 |
ORF3a | 95 | L95F | ttG | ttT | 5 | 5 | AY.7 | 0.00098 |
ORF3a | 95 | L95F | ttG | ttT | 5 | 5 | AY.98 | 0.000395 |
ORF3a | 95 | L95L | ttG | ttA | 5 | 5 | AY.98.1 | 0.000242 |
ORF3a | 95 | L95L | ttG | ttA | 5 | 5 | B.1.131 | 0.04386 |
ORF3a | 95 | L95F | ttG | ttT | 5 | 5 | B.1.177.87 | 0.003639 |
ORF3a | 95 | L95F | ttG | ttT | 5 | 5 | B.1.258.17 | 0.00052 |
ORF3a | 95 | L95F | ttG | ttT | 5 | 5 | B.1.311 | 0.001373 |
ORF3a | 95 | L95del | TTG | --- | 5 | 5 | B.1.525 | 0.000566 |
ORF3a | 95 | L95del2 | tTG | t-- | 4 | 4 | All | 0.000001 |
ORF3a | 95 | L95F | ttG | ttT | 4 | 4 | AY.117 | 0.000338 |
ORF3a | 95 | L95S | tTg | tCg | 4 | 4 | AY.117 | 0.000338 |
ORF3a | 95 | L95M | Ttg | Atg | 4 | 4 | AY.3 | 0.00004 |
ORF3a | 95 | L95F | ttG | ttT | 4 | 4 | AY.3.1 | 0.000341 |
ORF3a | 95 | L95L | ttG | ttA | 4 | 4 | AY.39 | 0.000099 |
ORF3a | 95 | L95del | TTG | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF3a | 95 | L95F | ttG | ttT | 4 | 4 | AY.41 | 0.001176 |
ORF3a | 95 | L95L | ttG | ttA | 3 | 4 | AY.43 | 0.000013 |
ORF3a | 95 | L95L | Ttg | Ctg | 1 | 4 | AY.43 | 0.000004 |
ORF3a | 95 | L95F | ttG | ttT | 4 | 4 | AY.46.4 | 0.000658 |
ORF3a | 95 | L95S | tTg | tCg | 4 | 4 | AY.98 | 0.000316 |
ORF3a | 95 | L95L | ttG | ttA | 4 | 4 | B.1.1.1 | 0.001307 |
ORF3a | 95 | L95M | Ttg | Atg | 4 | 4 | B.1.1.7 | 0.000004 |
ORF3a | 95 | L95F | ttG | ttT | 4 | 4 | B.1.177.21 | 0.000306 |
ORF3a | 95 | L95F | ttG | ttT | 3 | 4 | B.1.526 | 0.000071 |
ORF3a | 95 | L95F | ttG | ttC | 1 | 4 | B.1.526 | 0.000024 |
ORF3a | 95 | L95F | ttG | ttT | 4 | 4 | B.1.561 | 0.001588 |
ORF3a | 95 | L95F | ttG | ttT | 4 | 4 | B.1.595 | 0.001044 |
ORF3a | 95 | L95del | TTG | --- | 4 | 4 | P.1.15 | 0.000929 |
ORF3a | 95 | L95F | ttG | ttT | 3 | 3 | A.18 | 0.15 |
ORF3a | 95 | L95del1 | ttG | tt- | 3 | 3 | All | 0.000001 |
ORF3a | 95 | L95Y | tTG | tAT | 3 | 3 | All | 0.000001 |
ORF3a | 95 | L95D | TTG | GAT | 3 | 3 | All | 0.000001 |
ORF3a | 95 | L95R | TTg | AGg | 2 | 3 | All | 0 |
ORF3a | 95 | L95K | TTg | AAg | 2 | 3 | All | 0 |
ORF3a | 95 | L95I | TtG | AtT | 2 | 3 | All | 0 |
ORF3a | 95 | L95R | TTG | AGA | 1 | 3 | All | 0 |
ORF3a | 95 | L95I | TtG | AtC | 1 | 3 | All | 0 |
ORF3a | 95 | L95K | TTG | AAA | 1 | 3 | All | 0 |
ORF3a | 95 | L95S | tTg | tCg | 3 | 3 | AY.102 | 0.00008 |
ORF3a | 95 | L95S | tTg | tCg | 3 | 3 | AY.108 | 0.003308 |
ORF3a | 95 | L95F | ttG | ttT | 3 | 3 | AY.11 | 0.004016 |
ORF3a | 95 | L95F | ttG | ttT | 3 | 3 | AY.12 | 0.000948 |
ORF3a | 95 | L95S | tTg | tCg | 3 | 3 | AY.120 | 0.000112 |
ORF3a | 95 | L95del | TTG | --- | 3 | 3 | AY.23 | 0.000209 |
ORF3a | 95 | L95del | TTG | --- | 3 | 3 | AY.25 | 0.000018 |
ORF3a | 95 | L95F | ttG | ttT | 3 | 3 | AY.4.5 | 0.000322 |
ORF3a | 95 | L95S | tTg | tCg | 3 | 3 | AY.42 | 0.000121 |
ORF3a | 95 | L95C | tTG | tGT | 3 | 3 | AY.43 | 0.000013 |
ORF3a | 95 | L95S | tTg | tCg | 3 | 3 | AY.5 | 0.000062 |
ORF3a | 95 | L95F | ttG | ttT | 3 | 3 | AY.74 | 0.000347 |
ORF3a | 95 | L95S | tTg | tCg | 3 | 3 | AY.90 | 0.002053 |
ORF3a | 95 | L95L | Ttg | Ctg | 3 | 3 | AY.98 | 0.000237 |
ORF3a | 95 | L95X | tTg | tAg | 3 | 3 | B.1 | 0.000027 |
ORF3a | 95 | L95Q | TTg | CAg | 3 | 3 | B.1 | 0.000027 |
ORF3a | 95 | L95M | Ttg | Atg | 3 | 3 | B.1.1 | 0.000054 |
ORF3a | 95 | L95L | ttG | ttA | 2 | 3 | B.1.1 | 0.000036 |
ORF3a | 95 | L95L | Ttg | Ctg | 1 | 3 | B.1.1 | 0.000018 |
ORF3a | 95 | L95F | ttG | ttT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF3a | 95 | L95V | Ttg | Gtg | 3 | 3 | B.1.177 | 0.00004 |
ORF3a | 95 | L95L | ttG | ttA | 2 | 3 | B.1.243 | 0.000139 |
ORF3a | 95 | L95L | Ttg | Ctg | 1 | 3 | B.1.243 | 0.00007 |
ORF3a | 95 | L95F | ttG | ttT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF3a | 95 | L95F | ttG | ttT | 3 | 3 | B.1.367 | 0.002377 |
ORF3a | 95 | L95L | ttG | ttA | 3 | 3 | B.1.427 | 0.000151 |
ORF3a | 95 | L95F | ttG | ttT | 3 | 3 | B.1.468 | 0.017143 |
ORF3a | 95 | L95V | Ttg | Gtg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF3a | 95 | L95del | TTG | --- | 3 | 3 | B.1.621 | 0.000266 |
ORF3a | 95 | L95F | ttG | ttT | 3 | 3 | B.1.637 | 0.000219 |
ORF3a | 95 | L95L | ttG | ttA | 3 | 3 | B.1.8 | 0.005917 |
ORF3a | 95 | L95G | TTg | GGg | 2 | 3 | B.1.91 | 0.004149 |
ORF3a | 95 | L95E | TTg | GAg | 2 | 3 | B.1.91 | 0.004149 |
ORF3a | 95 | L95G | TTG | GGA | 1 | 3 | B.1.91 | 0.002075 |
ORF3a | 95 | L95E | TTG | GAA | 1 | 3 | B.1.91 | 0.002075 |
ORF3a | 95 | L95F | ttG | ttT | 3 | 3 | B.6 | 0.00273 |
ORF3a | 95 | L95S | tTg | tCg | 3 | 3 | C.37 | 0.000348 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 3 | D.2 | 0.00015 |
ORF3a | 95 | L95F | ttG | ttC | 1 | 3 | D.2 | 0.000075 |
ORF3a | 95 | L95L | ttG | ttA | 2 | 3 | P.1 | 0.000032 |
ORF3a | 95 | L95L | Ttg | Ctg | 1 | 3 | P.1 | 0.000016 |
ORF3a | 95 | L95F | ttG | ttT | 3 | 3 | P.1.10 | 0.000808 |
ORF3a | 95 | L95F | ttG | ttT | 3 | 3 | P.1.14 | 0.000143 |
ORF3a | 95 | L95V | Ttg | Gtg | 2 | 2 | 0.111111 | |
ORF3a | 95 | L95del | TTG | --- | 2 | 2 | 0.111111 | |
ORF3a | 95 | L95L | ttG | ttA | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 95 | L95S | tTg | tCg | 2 | 2 | AY.109 | 0.001479 |
ORF3a | 95 | L95S | tTg | tCg | 2 | 2 | AY.111 | 0.000366 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | AY.16.1 | 0.00094 |
ORF3a | 95 | L95S | tTg | tCg | 2 | 2 | AY.23 | 0.000139 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | AY.24 | 0.000862 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | AY.27 | 0.000129 |
ORF3a | 95 | L95D | TTG | GAT | 2 | 2 | AY.43 | 0.000009 |
ORF3a | 95 | L95Y | tTG | tAT | 2 | 2 | AY.43 | 0.000009 |
ORF3a | 95 | L95I | TtG | AtC | 1 | 2 | AY.43 | 0.000004 |
ORF3a | 95 | L95I | TtG | AtT | 1 | 2 | AY.43 | 0.000004 |
ORF3a | 95 | L95del | TTG | --- | 2 | 2 | AY.44 | 0.000012 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | AY.45 | 0.000243 |
ORF3a | 95 | L95L | ttG | ttA | 2 | 2 | AY.46 | 0.000208 |
ORF3a | 95 | L95S | tTg | tCg | 2 | 2 | AY.47 | 0.000062 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | AY.48 | 0.00093 |
ORF3a | 95 | L95S | tTg | tCg | 2 | 2 | AY.51 | 0.001818 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | AY.56 | 0.00321 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | AY.57 | 0.001312 |
ORF3a | 95 | L95L | Ttg | Ctg | 2 | 2 | AY.6 | 0.000082 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | AY.61 | 0.00021 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | AY.7.1 | 0.000225 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | AY.70 | 0.000417 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 95 | L95L | ttG | ttA | 2 | 2 | AY.9 | 0.000135 |
ORF3a | 95 | L95S | tTg | tCg | 2 | 2 | AY.92 | 0.000575 |
ORF3a | 95 | L95V | TtG | GtT | 1 | 2 | AY.98.1 | 0.000048 |
ORF3a | 95 | L95V | Ttg | Gtg | 1 | 2 | AY.98.1 | 0.000048 |
ORF3a | 95 | L95S | tTg | tCg | 2 | 2 | B.1 | 0.000018 |
ORF3a | 95 | L95W | tTg | tGg | 2 | 2 | B.1 | 0.000018 |
ORF3a | 95 | L95V | Ttg | Gtg | 2 | 2 | B.1 | 0.000018 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF3a | 95 | L95L | ttG | ttA | 2 | 2 | B.1.1.229 | 0.011494 |
ORF3a | 95 | L95del | TTG | --- | 2 | 2 | B.1.1.315 | 0.016949 |
ORF3a | 95 | L95L | Ttg | Ctg | 2 | 2 | B.1.1.416 | 0.00181 |
ORF3a | 95 | L95S | tTg | tCg | 2 | 2 | B.1.1.519 | 0.000079 |
ORF3a | 95 | L95G | TTg | GGg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF3a | 95 | L95X | tTG | tAA | 1 | 2 | B.1.1.7 | 0.000001 |
ORF3a | 95 | L95X | tTg | tAg | 1 | 2 | B.1.1.7 | 0.000001 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | B.1.1.70 | 0.000682 |
ORF3a | 95 | L95S | tTg | tCg | 2 | 2 | B.1.14 | 0.035088 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | B.1.177.60 | 0.000437 |
ORF3a | 95 | L95S | tTg | tCg | 2 | 2 | B.1.177.75 | 0.002081 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF3a | 95 | L95del | TTG | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 95 | L95S | tTg | tCg | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | B.1.258 | 0.000133 |
ORF3a | 95 | L95V | Ttg | Gtg | 2 | 2 | B.1.258 | 0.000133 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | B.1.36.38 | 0.003284 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | B.1.427 | 0.000101 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 95 | L95del | TTG | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | B.1.626 | 0.011429 |
ORF3a | 95 | L95R | TTg | AGg | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 95 | L95K | TTG | AAA | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 95 | L95R | TTG | AGA | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 95 | L95K | TTg | AAg | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | C.1 | 0.004785 |
ORF3a | 95 | L95del | TTG | --- | 2 | 2 | C.37 | 0.000232 |
ORF3a | 95 | L95E | TTg | GAg | 2 | 2 | P.1 | 0.000032 |
ORF3a | 95 | L95V | Ttg | Gtg | 2 | 2 | P.1 | 0.000032 |
ORF3a | 95 | L95S | tTg | tCg | 2 | 2 | P.1.12 | 0.000968 |
ORF3a | 95 | L95V | Ttg | Gtg | 2 | 2 | P.2 | 0.000373 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | P.2 | 0.000373 |
ORF3a | 95 | L95F | ttG | ttT | 2 | 2 | Q.8 | 0.00033 |
ORF3a | 95 | L95F | ttG | ttC | 2 | 2 | R.1 | 0.00018 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | A | 0.000387 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | A.1 | 0.000282 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AE.8 | 0.000489 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | AH.3 | 0.003802 |
ORF3a | 95 | L95P | TTG | CCT | 1 | 1 | All | 0 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | AV.1 | 0.005051 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.10 | 0.00053 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.104 | 0.001984 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 95 | L95L | Ttg | Ctg | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 95 | L95C | tTG | tGC | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 95 | L95S | tTg | tCg | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 95 | L95L | Ttg | Ctg | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF3a | 95 | L95S | tTg | tCg | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 1 | AY.21 | 0.001898 |
ORF3a | 95 | L95V | Ttg | Gtg | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 95 | L95S | tTg | tCg | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 95 | L95K | TTg | AAg | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 95 | L95E | TTg | GAg | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 95 | L95G | TTg | GGg | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 95 | L95V | Ttg | Gtg | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 95 | L95R | TTg | AGg | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 95 | L95W | tTg | tGg | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 95 | L95X | tTg | tAg | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 95 | L95S | tTg | tCg | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 95 | L95C | tTG | tGT | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 95 | L95V | Ttg | Gtg | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.4.1 | 0.000737 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 95 | L95S | tTg | tCg | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 95 | L95V | Ttg | Gtg | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 95 | L95X | tTg | tAg | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 95 | L95S | tTg | tCg | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 95 | L95V | Ttg | Gtg | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 95 | L95M | Ttg | Atg | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 95 | L95E | TTg | GAg | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 95 | L95del2 | tTG | t-- | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 95 | L95X | tTg | tAg | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 95 | L95V | Ttg | Gtg | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.46.5 | 0.000198 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 95 | L95S | tTg | tCg | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 95 | L95V | Ttg | Gtg | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | AY.52 | 0.000814 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.52 | 0.000814 |
ORF3a | 95 | L95L | Ttg | Ctg | 1 | 1 | AY.52 | 0.000814 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 95 | L95V | Ttg | Gtg | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.60 | 0.000938 |
ORF3a | 95 | L95S | tTg | tCg | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 95 | L95W | tTg | tGg | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.63 | 0.000387 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.64 | 0.000595 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 95 | L95W | tTg | tGg | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 95 | L95L | Ttg | Ctg | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 95 | L95S | tTg | tCg | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 95 | L95L | TtG | CtA | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 95 | L95W | tTg | tGg | 1 | 1 | AY.77 | 0.001127 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.78 | 0.001541 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 1 | AY.81 | 0.001992 |
ORF3a | 95 | L95L | Ttg | Ctg | 1 | 1 | AY.84 | 0.000437 |
ORF3a | 95 | L95S | tTg | tCg | 1 | 1 | AY.89 | 0.004902 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 95 | L95Y | tTG | tAT | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 95 | L95E | TTg | GAg | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 95 | L95D | TTG | GAT | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 95 | L95X | tTg | tAg | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 95 | L95S | tTg | tCg | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 95 | L95S | tTg | tCg | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 95 | L95L | Ttg | Ctg | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B | 0.000128 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | B | 0.000128 |
ORF3a | 95 | L95del1 | ttG | tt- | 1 | 1 | B.1 | 0.000009 |
ORF3a | 95 | L95P | TTG | CCT | 1 | 1 | B.1 | 0.000009 |
ORF3a | 95 | L95G | TTg | GGg | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 95 | L95S | tTg | tCg | 1 | 1 | B.1.1.10 | 0.001115 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | B.1.1.101 | 0.01 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF3a | 95 | L95V | Ttg | Gtg | 1 | 1 | B.1.1.194 | 0.00495 |
ORF3a | 95 | L95del1 | ttG | tt- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.1.237 | 0.005405 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.1.272 | 0.005208 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.1.282 | 0.011628 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.1.288 | 0.001916 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.1.307 | 0.002532 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 95 | L95E | TTg | GAg | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 95 | L95V | Ttg | Gtg | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.1.362 | 0.005618 |
ORF3a | 95 | L95M | Ttg | Atg | 1 | 1 | B.1.1.370 | 0.012658 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 1 | B.1.1.374 | 0.002375 |
ORF3a | 95 | L95M | Ttg | Atg | 1 | 1 | B.1.1.397 | 0.002252 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF3a | 95 | L95L | Ttg | Ctg | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 95 | L95V | Ttg | Gtg | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.1.528 | 0.004808 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF3a | 95 | L95Q | TTg | CAg | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.158 | 0.02381 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 95 | L95X | tTg | tAg | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 95 | L95L | Ttg | Ctg | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF3a | 95 | L95X | tTg | tAg | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 95 | L95V | Ttg | Gtg | 1 | 1 | B.1.177.63 | 0.002703 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 95 | L95V | Ttg | Gtg | 1 | 1 | B.1.177.8 | 0.000752 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF3a | 95 | L95L | TtG | CtA | 1 | 1 | B.1.179 | 0.003759 |
ORF3a | 95 | L95X | tTg | tAg | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 95 | L95del2 | tTG | t-- | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 95 | L95V | Ttg | Gtg | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.227 | 0.047619 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.236 | 0.002053 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.258.3 | 0.001675 |
ORF3a | 95 | L95L | TtG | CtA | 1 | 1 | B.1.260 | 0.003344 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.313 | 0.006579 |
ORF3a | 95 | L95G | TTG | GGT | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 95 | L95del2 | tTG | t-- | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 95 | L95C | tTG | tGT | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 95 | L95L | TtG | CtA | 1 | 1 | B.1.36.8 | 0.001 |
ORF3a | 95 | L95del2 | tTG | t-- | 1 | 1 | B.1.36.8 | 0.001 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | B.1.362 | 0.001541 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 95 | L95M | Ttg | Atg | 1 | 1 | B.1.400 | 0.000429 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF3a | 95 | L95I | TtG | AtT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.439 | 0.005917 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.453 | 0.003236 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.499 | 0.00105 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 1 | B.1.517 | 0.000427 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.523 | 0.002451 |
ORF3a | 95 | L95V | Ttg | Gtg | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 95 | L95L | TtG | CtA | 1 | 1 | B.1.537 | 0.02 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.564 | 0.000426 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 1 | B.1.575 | 0.000303 |
ORF3a | 95 | L95del1 | ttG | tt- | 1 | 1 | B.1.580 | 0.004065 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 1 | B.1.582 | 0.000491 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.588 | 0.00091 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 95 | L95V | Ttg | Gtg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 95 | L95S | tTg | tCg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 95 | L95Q | TTg | CAg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 95 | L95X | tTg | tAg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.618 | 0.004032 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 95 | L95S | tTg | tCg | 1 | 1 | B.1.627 | 0.00202 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.1.627 | 0.00202 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.28 | 0.003279 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | B.4.5 | 0.011905 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 1 | B.40 | 0.000364 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | C.1.2 | 0.004255 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | C.26 | 0.007353 |
ORF3a | 95 | L95V | Ttg | Gtg | 1 | 1 | C.36 | 0.000911 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | C.37 | 0.000116 |
ORF3a | 95 | L95X | tTg | tAg | 1 | 1 | D.2 | 0.000075 |
ORF3a | 95 | L95L | Ttg | Ctg | 1 | 1 | D.2 | 0.000075 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | M.1 | 0.023256 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | N.4 | 0.004255 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | N.5 | 0.001767 |
ORF3a | 95 | L95G | TTg | GGg | 1 | 1 | P.1 | 0.000016 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 95 | L95L | ttG | ttA | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 95 | L95G | TTg | GGg | 1 | 1 | P.1.17 | 0.000162 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | P.7 | 0.004367 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 95 | L95F | ttG | ttT | 1 | 1 | Q.3 | 0.000145 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 95 | L95del | TTG | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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