CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 93

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a93H93YnonsynCacTac546354600.99945125669-25671
ORF3a93H93YnonsynCaCTaT546330.00054914925669-25671
ORF3a93H93HsyncaCcaT19441944125669-25671
ORF3a93H93deldelCAC---191191125669-25671
ORF3a93H93NnonsynCacAac1221210.99180325669-25671
ORF3a93H93NnonsynCaCAaT12210.0081967225669-25671
ORF3a93H93QnonsyncaCcaA107950.8878525669-25671
ORF3a93H93QnonsyncaCcaG107120.1121525669-25671
ORF3a93H93LnonsyncAccTc42380.90476225669-25671
ORF3a93H93LnonsyncACcTT4240.095238125669-25671
ORF3a93H93RnonsyncAccGc4040125669-25671
ORF3a93H93DnonsynCacGac3131125669-25671
ORF3a93H93PnonsyncAccCc20180.925669-25671
ORF3a93H93PnonsyncACcCG2010.0525669-25671
ORF3a93H93PnonsyncACcCT2010.0525669-25671
ORF3a93H93del1delCac-ac940.44444425669-25671
ORF3a93H93del1delcaCca-940.44444425669-25671
ORF3a93H93del1delCAC-NN910.11111125669-25671
ORF3a93H93FnonsynCAcTTc530.625669-25671
ORF3a93H93FnonsynCACTTT520.425669-25671
ORF3a93H93del2delCAC--N320.66666725669-25671
ORF3a93H93del2delcACc--310.33333325669-25671
ORF3a93H93InonsynCACATT210.525669-25671
ORF3a93H93InonsynCAcATc210.525669-25671
ORF3a93H93CnonsynCACTGT11125669-25671
ORF3a93H93TnonsynCAcACc11125669-25671
ORF3a93H93EnonsynCaCGaG11125669-25671
ORF3a93H93SnonsynCAcTCc11125669-25671

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a93H93YCacTac54605463All0.001044
ORF3a93H93YCaCTaT35463All0.000001
ORF3a93H93HcaCcaT19441944All0.000372
ORF3a93H93YCacTac13541354AY.470.042116
ORF3a93H93HcaCcaT529529AY.40.000823
ORF3a93H93YCacTac392393AY.250.002358
ORF3a93H93YCaCTaT1393AY.250.000006
ORF3a93H93YCacTac348349B.1.1.70.000312
ORF3a93H93YCaCTaT1349B.1.1.70.000001
ORF3a93H93YCacTac304304AY.99.20.028016
ORF3a93H93YCacTac303303B.3.10.502488
ORF3a93H93YCacTac293293AY.1200.010893
ORF3a93H93YCacTac292292AY.440.001777
ORF3a93H93YCacTac283283B.1.1600.008826
ORF3a93H93YCacTac279279AY.4.20.006051
ORF3a93H93HcaCcaT256256B.1.1.70.000229
ORF3a93H93HcaCcaT239239AY.23.10.09975
ORF3a93H93delCAC---191191All0.000037
ORF3a93H93YCacTac191191B.1.617.20.000719
ORF3a93H93HcaCcaT153153AY.1100.017241
ORF3a93H93YCacTac135135AY.1000.006211
ORF3a93H93NCacAac121122All0.000023
ORF3a93H93NCaCAaT1122All0
ORF3a93H93YCacTac110110B.10.001008
ORF3a93H93QcaCcaA95107All0.000018
ORF3a93H93QcaCcaG12107All0.000002
ORF3a93H93YCacTac105105B.1.3510.003121
ORF3a93H93YCacTac104104AY.40.000162
ORF3a93H93HcaCcaT9797B.1.4290.002282
ORF3a93H93YCacTac7373B.1.20.000643
ORF3a93H93HcaCcaT7070B.1.3490.050036
ORF3a93H93YCacTac6262AY.1030.000385
ORF3a93H93YCacTac6060AY.390.001483
ORF3a93H93YCacTac5353AY.430.000235
ORF3a93H93YCacTac5252B.1.4290.001224
ORF3a93H93YCacTac4747B.1.177.160.031229
ORF3a93H93HcaCcaT4545B.1.617.20.000169
ORF3a93H93LcAccTc3842All0.000007
ORF3a93H93LcACcTT442All0.000001
ORF3a93H93RcAccGc4040All0.000008
ORF3a93H93HcaCcaT3939AY.290.000615
ORF3a93H93YCacTac3939AY.30.000388
ORF3a93H93HcaCcaT3939B.1.1.5240.8125
ORF3a93H93YCacTac3535B.1.1770.000461
ORF3a93H93YCacTac3535B.1.351.20.01059
ORF3a93H93delCAC---3434B.1.1.70.00003
ORF3a93H93NCacAac3434B.1.617.20.000128
ORF3a93H93NCacAac3232B.1.1.70.000029
ORF3a93H93DCacGac3131All0.000006
ORF3a93H93delCAC---3131AY.1030.000192
ORF3a93H93YCacTac3030AY.910.021914
ORF3a93H93YCacTac3030B.1.160.130.833333
ORF3a93H93YCacTac2929P.1.140.001386
ORF3a93H93YCacTac2424AY.1020.000636
ORF3a93H93HcaCcaT2424AY.430.000106
ORF3a93H93HcaCcaT2222AY.1030.000137
ORF3a93H93HcaCcaT2222B.10.000202
ORF3a93H93QcaCcaA2121B.1.1.70.000019
ORF3a93H93HcaCcaT2121B.1.5260.000494
ORF3a93H93YCacTac2121P.10.000331
ORF3a93H93PcAccCc1820All0.000003
ORF3a93H93PcACcCT120All0
ORF3a93H93PcACcCG120All0
ORF3a93H93HcaCcaT2020AY.440.000122
ORF3a93H93YCacTac1919B.1.1.3580.655172
ORF3a93H93YCacTac1717AY.9.20.000624
ORF3a93H93HcaCcaT1717B.1.20.00015
ORF3a93H93HcaCcaT1616AY.250.000096
ORF3a93H93HcaCcaT1414AY.30.000139
ORF3a93H93HcaCcaT1414AY.390.000346
ORF3a93H93HcaCcaT1414AY.7.10.001578
ORF3a93H93QcaCcaA1414B.1.4290.000329
ORF3a93H93QcaCcaA1414B.1.617.20.000053
ORF3a93H93HcaCcaT1313AY.29.10.002867
ORF3a93H93LcAccTc1313AY.440.000079
ORF3a93H93YCacTac1313AY.690.002427
ORF3a93H93HcaCcaT1313B.1.4270.000656
ORF3a93H93HcaCcaT1212AY.420.000483
ORF3a93H93NCacAac1212AY.430.000053
ORF3a93H93YCacTac1212B.1.1.5190.000477
ORF3a93H93HcaCcaT1212B.1.1770.000158
ORF3a93H93YCacTac1212B.1.5260.000282
ORF3a93H93delCAC---1111B.10.000101
ORF3a93H93YCacTac1010AY.130.00161
ORF3a93H93delCAC---1010B.1.1770.000132
ORF3a93H93HcaCcaT1010B.1.2430.000696
ORF3a93H93HcaCcaT1010P.10.000158
ORF3a93H93LcAccTc1010P.10.000158
ORF3a93H93del1caCca-49All0.000001
ORF3a93H93del1Cac-ac49All0.000001
ORF3a93H93del1CAC-NN19All0
ORF3a93H93HcaCcaT99AY.1000.000414
ORF3a93H93HcaCcaT99AY.1020.000239
ORF3a93H93YCacTac99AY.1180.000564
ORF3a93H93DCacGac99AY.40.000014
ORF3a93H93QcaCcaA99AY.40.000014
ORF3a93H93YCacTac99AY.46.40.001481
ORF3a93H93YCacTac99B.1.10.000163
ORF3a93H93YCacTac99B.1.1.330.003788
ORF3a93H93HcaCcaT99B.1.177.810.001704
ORF3a93H93YCacTac99B.1.2430.000626
ORF3a93H93delCAC---88AY.40.000012
ORF3a93H93HcaCcaT88AY.50.000165
ORF3a93H93YCacTac88AY.850.003417
ORF3a93H93YCacTac77AY.1170.000592
ORF3a93H93YCacTac77AY.1190.000247
ORF3a93H93HcaCcaT77AY.200.000272
ORF3a93H93RcAccGc77AY.30.00007
ORF3a93H93YCacTac77AY.450.000852
ORF3a93H93YCacTac77AY.7.10.000789
ORF3a93H93HcaCcaT77B.1.258.170.000728
ORF3a93H93YCacTac77B.1.3990.01354
ORF3a93H93LcAccTc56AY.250.00003
ORF3a93H93LcACcTT16AY.250.000006
ORF3a93H93YCacTac66AY.260.00017
ORF3a93H93HcaCcaT66AY.4.20.00013
ORF3a93H93YCacTac66AY.50.000124
ORF3a93H93RcAccGc66AY.9.10.000502
ORF3a93H93YCacTac66AY.980.000474
ORF3a93H93HcaCcaT66AY.99.20.000553
ORF3a93H93YCacTac66B.1.1.10.00196
ORF3a93H93YCacTac66B.1.1.3000.064516
ORF3a93H93HcaCcaT66B.1.1.5190.000238
ORF3a93H93YCacTac66B.30.004983
ORF3a93H93delCAC---66P.10.000095
ORF3a93H93HcaCcaT66P.1.100.001617
ORF3a93H93HcaCcaT66P.1.140.000287
ORF3a93H93FCAcTTc35All0.000001
ORF3a93H93FCACTTT25All0
ORF3a93H93HcaCcaT55AY.130.000805
ORF3a93H93YCacTac55AY.230.000349
ORF3a93H93HcaCcaT55AY.330.000334
ORF3a93H93YCacTac55AY.750.00028
ORF3a93H93YCacTac55B.1.177.600.001092
ORF3a93H93HcaCcaT55B.1.3510.000149
ORF3a93H93delCAC---55B.1.5250.000566
ORF3a93H93HcaCcaT55B.1.6210.000443
ORF3a93H93delCAC---55P.1.150.001162
ORF3a93H93YCacTac55P.1.70.001596
ORF3a93H93QcaCcaA44AY.1030.000025
ORF3a93H93HcaCcaT44AY.1130.00057
ORF3a93H93HcaCcaT44AY.1190.000141
ORF3a93H93HcaCcaT44AY.1200.000149
ORF3a93H93HcaCcaT44AY.230.000279
ORF3a93H93delCAC---44AY.250.000024
ORF3a93H93FCAcTTc34AY.250.000018
ORF3a93H93FCACTTT14AY.250.000006
ORF3a93H93QcaCcaG34AY.4.50.000322
ORF3a93H93QcaCcaA14AY.4.50.000107
ORF3a93H93HcaCcaT44B.1.10.000073
ORF3a93H93HcaCcaT44B.1.1.1530.004381
ORF3a93H93YCacTac44B.1.1.390.002039
ORF3a93H93LcAccTc24B.1.1.70.000002
ORF3a93H93LcACcTT24B.1.1.70.000002
ORF3a93H93NCacAac44B.1.1600.000125
ORF3a93H93HcaCcaT44B.1.177.600.000874
ORF3a93H93YCacTac44B.1.2210.000284
ORF3a93H93YCacTac34B.1.360.000438
ORF3a93H93YCaCTaT14B.1.360.000146
ORF3a93H93YCacTac44B.1.36.180.001681
ORF3a93H93HcaCcaT44C.160.004242
ORF3a93H93del2CAC--N23All0
ORF3a93H93del2cACc--13All0
ORF3a93H93NCacAac33AY.1020.00008
ORF3a93H93QcaCcaA33AY.1020.00008
ORF3a93H93DCacGac33AY.1030.000019
ORF3a93H93delCAC---33AY.230.000209
ORF3a93H93PcAccCc23AY.250.000012
ORF3a93H93PcACcCT13AY.250.000006
ORF3a93H93NCacAac33AY.40.000005
ORF3a93H93RcAccGc33AY.40.000005
ORF3a93H93delCAC---33AY.4.50.000322
ORF3a93H93DCacGac33AY.420.000121
ORF3a93H93delCAC---33AY.430.000013
ORF3a93H93delCAC---33AY.440.000018
ORF3a93H93QcaCcaA23AY.440.000012
ORF3a93H93QcaCcaG13AY.440.000006
ORF3a93H93HcaCcaT33AY.460.000312
ORF3a93H93YCacTac33AY.460.000312
ORF3a93H93HcaCcaT33AY.540.000286
ORF3a93H93YCacTac33AY.540.000286
ORF3a93H93YCacTac33AY.620.001307
ORF3a93H93YCacTac33AY.670.001393
ORF3a93H93YCacTac33AY.840.001312
ORF3a93H93HcaCcaT33AY.90.000203
ORF3a93H93YCacTac33AY.920.000862
ORF3a93H93NCacAac33B.1.10.000054
ORF3a93H93YCacTac33B.1.1.2160.002671
ORF3a93H93HcaCcaT33B.1.1.2220.000612
ORF3a93H93YCacTac33B.1.1.280.000934
ORF3a93H93DCacGac33B.1.1.70.000003
ORF3a93H93RcAccGc33B.1.1.70.000003
ORF3a93H93PcAccCc33B.1.1.70.000003
ORF3a93H93HcaCcaT33B.1.177.70.000495
ORF3a93H93NCacAac33B.1.20.000026
ORF3a93H93QcaCcaA23B.1.20.000018
ORF3a93H93QcaCcaG13B.1.20.000009
ORF3a93H93YCacTac33B.1.2800.021429
ORF3a93H93RcAccGc33B.1.4270.000151
ORF3a93H93YCacTac33B.1.6090.001438
ORF3a93H93delCAC---33B.1.617.20.000011
ORF3a93H93delCAC---33B.1.6210.000266
ORF3a93H93delCAC---33C.370.000348
ORF3a93H93YCacTac33C.370.000348
ORF3a93H93QcaCcaA23P.10.000032
ORF3a93H93QcaCcaG13P.10.000016
ORF3a93H93YCacTac22A.2.5.20.003145
ORF3a93H93ICAcATc12All0
ORF3a93H93ICACATT12All0
ORF3a93H93delCAC---22AY.1000.000092
ORF3a93H93RcAccGc22AY.1030.000012
ORF3a93H93DCacGac22AY.1090.001479
ORF3a93H93YCacTac22AY.1100.000225
ORF3a93H93YCacTac22AY.1130.000285
ORF3a93H93delCAC---22AY.1170.000169
ORF3a93H93QcaCcaA22AY.1200.000074
ORF3a93H93YCacTac22AY.120.10.000642
ORF3a93H93YCacTac22AY.140.000176
ORF3a93H93YCacTac22AY.200.000078
ORF3a93H93YCacTac22AY.240.000862
ORF3a93H93YCacTac22AY.270.000129
ORF3a93H93HcaCcaT22AY.270.000129
ORF3a93H93delCAC---22AY.290.000032
ORF3a93H93HcaCcaT22AY.3.10.000171
ORF3a93H93YCacTac22AY.350.000466
ORF3a93H93HcaCcaT22AY.360.000296
ORF3a93H93YCacTac22AY.360.000296
ORF3a93H93QcaCcaA22AY.390.000049
ORF3a93H93del1Cac-ac22AY.40.000003
ORF3a93H93HcaCcaT22AY.4.40.000818
ORF3a93H93HcaCcaT22AY.4.50.000215
ORF3a93H93YCacTac22AY.4.50.000215
ORF3a93H93HcaCcaT22AY.410.000588
ORF3a93H93NCacAac22AY.440.000012
ORF3a93H93QcaCcaA22AY.46.60.000144
ORF3a93H93HcaCcaT22AY.5.30.000675
ORF3a93H93YCacTac22AY.5.40.000553
ORF3a93H93HcaCcaT22AY.60.000082
ORF3a93H93YCacTac22AY.610.00021
ORF3a93H93HcaCcaT22AY.750.000112
ORF3a93H93QcaCcaA22AY.75.10.000361
ORF3a93H93NCacAac22AY.840.000875
ORF3a93H93HcaCcaT22AY.9.20.000073
ORF3a93H93del1Cac-ac22B.10.000018
ORF3a93H93NCacAac22B.1.1.2140.000111
ORF3a93H93YCacTac22B.1.1.2340.024096
ORF3a93H93YCacTac22B.1.1.2840.000215
ORF3a93H93NCacAac22B.1.1.330.000842
ORF3a93H93PcAccCc12B.1.1.330.000421
ORF3a93H93PcACcCG12B.1.1.330.000421
ORF3a93H93QcaCcaA22B.1.1.5190.000079
ORF3a93H93delCAC---22B.1.1600.000062
ORF3a93H93delCAC---22B.1.177.350.001382
ORF3a93H93RcAccGc22B.1.20.000018
ORF3a93H93HcaCcaT22B.1.2340.000264
ORF3a93H93NCacAac22B.1.2360.004107
ORF3a93H93HcaCcaT22B.1.2410.001623
ORF3a93H93YCacTac22B.1.3360.004878
ORF3a93H93delCAC---22B.1.351.20.000605
ORF3a93H93QcaCcaA22B.1.360.000292
ORF3a93H93YCacTac22B.1.36.290.001035
ORF3a93H93YCacTac22B.1.3980.005952
ORF3a93H93YCacTac22B.1.4090.001563
ORF3a93H93NCacAac12B.1.5760.000907
ORF3a93H93ICACATT12B.1.5760.000907
ORF3a93H93ICAcATc12B.1.5760.000907
ORF3a93H93NCaCAaT12B.1.5760.000907
ORF3a93H93LcACcTT12B.1.5760.000907
ORF3a93H93LcAccTc12B.1.5760.000907
ORF3a93H93delCAC---22B.1.5960.000174
ORF3a93H93QcaCcaA22B.1.5960.000174
ORF3a93H93YCacTac22B.1.6100.007092
ORF3a93H93DCacGac22B.1.617.20.000008
ORF3a93H93PcAccCc22B.1.617.20.000008
ORF3a93H93NCacAac22B.1.6210.000177
ORF3a93H93RcAccGc22D.20.00015
ORF3a93H93DCacGac22P.10.000032
ORF3a93H93HcaCcaT22P.1.70.000639
ORF3a93H93HcaCcaT22P.30.00319
ORF3a93H93YCacTac22Q.40.00091
ORF3a93H93YCacTac11A0.000387
ORF3a93H93delCAC---11A0.000387
ORF3a93H93QcaCcaA11A.10.000282
ORF3a93H93RcAccGc11A.20.000662
ORF3a93H93YCacTac11A.2.20.001689
ORF3a93H93PcAccCc11A.2.40.003367
ORF3a93H93YCacTac11A.30.002096
ORF3a93H93YCacTac11AD.20.000219
ORF3a93H93delCAC---11AD.20.000219
ORF3a93H93YCacTac11AE.80.000489
ORF3a93H93delCAC---11AH.30.003802
ORF3a93H93CCACTGT11All0
ORF3a93H93ECaCGaG11All0
ORF3a93H93TCAcACc11All0
ORF3a93H93SCAcTCc11All0
ORF3a93H93delCAC---11AV.10.005051
ORF3a93H93YCacTac11AY.100.00053
ORF3a93H93QcaCcaA11AY.1000.000046
ORF3a93H93RcAccGc11AY.1020.000027
ORF3a93H93delCAC---11AY.1020.000027
ORF3a93H93YCacTac11AY.1050.000643
ORF3a93H93HcaCcaT11AY.1060.000335
ORF3a93H93delCAC---11AY.1080.001103
ORF3a93H93DCacGac11AY.1100.000113
ORF3a93H93RcAccGc11AY.1110.000183
ORF3a93H93delCAC---11AY.1110.000183
ORF3a93H93delCAC---11AY.1130.000142
ORF3a93H93HcaCcaT11AY.116.10.000311
ORF3a93H93NCacAac11AY.1170.000085
ORF3a93H93HcaCcaT11AY.1170.000085
ORF3a93H93SCAcTCc11AY.1180.000063
ORF3a93H93NCacAac11AY.1180.000063
ORF3a93H93QcaCcaG11AY.1190.000035
ORF3a93H93QcaCcaA11AY.1210.000135
ORF3a93H93HcaCcaT11AY.1210.000135
ORF3a93H93delCAC---11AY.200.000039
ORF3a93H93QcaCcaA11AY.200.000039
ORF3a93H93LcAccTc11AY.200.000039
ORF3a93H93RcAccGc11AY.23.10.000417
ORF3a93H93del2CAC--N11AY.250.000006
ORF3a93H93RcAccGc11AY.250.000006
ORF3a93H93HcaCcaT11AY.260.000028
ORF3a93H93LcAccTc11AY.260.000028
ORF3a93H93YCacTac11AY.290.000016
ORF3a93H93QcaCcaA11AY.30.00001
ORF3a93H93QcaCcaG11AY.300.000396
ORF3a93H93HcaCcaT11AY.320.000532
ORF3a93H93YCacTac11AY.320.000532
ORF3a93H93YCacTac11AY.330.000067
ORF3a93H93NCacAac11AY.340.000097
ORF3a93H93delCAC---11AY.34.10.00051
ORF3a93H93NCacAac11AY.34.10.00051
ORF3a93H93delCAC---11AY.350.000233
ORF3a93H93delCAC---11AY.390.000025
ORF3a93H93PcAccCc11AY.390.000025
ORF3a93H93NCacAac11AY.390.000025
ORF3a93H93HcaCcaT11AY.39.10.00004
ORF3a93H93YCacTac11AY.39.10.00004
ORF3a93H93LcAccTc11AY.40.000002
ORF3a93H93del2CAC--N11AY.40.000002
ORF3a93H93delCAC---11AY.4.20.000022
ORF3a93H93YCacTac11AY.4.2.10.000149
ORF3a93H93LcAccTc11AY.4.50.000107
ORF3a93H93YCacTac11AY.420.00004
ORF3a93H93LcAccTc11AY.430.000004
ORF3a93H93PcAccCc11AY.440.000006
ORF3a93H93RcAccGc11AY.440.000006
ORF3a93H93QcaCcaA11AY.460.000104
ORF3a93H93NCacAac11AY.460.000104
ORF3a93H93YCacTac11AY.46.20.000635
ORF3a93H93delCAC---11AY.46.40.000165
ORF3a93H93HcaCcaT11AY.46.60.000072
ORF3a93H93HcaCcaT11AY.470.000031
ORF3a93H93delCAC---11AY.470.000031
ORF3a93H93QcaCcaA11AY.50.000021
ORF3a93H93DCacGac11AY.50.000021
ORF3a93H93YCacTac11AY.5.10.003759
ORF3a93H93YCacTac11AY.5.20.002463
ORF3a93H93YCacTac11AY.5.30.000337
ORF3a93H93delCAC---11AY.520.000814
ORF3a93H93YCacTac11AY.530.000288
ORF3a93H93delCAC---11AY.540.000095
ORF3a93H93NCacAac11AY.540.000095
ORF3a93H93RcAccGc11AY.540.000095
ORF3a93H93delCAC---11AY.580.000907
ORF3a93H93YCacTac11AY.580.000907
ORF3a93H93YCacTac11AY.590.00053
ORF3a93H93YCacTac11AY.60.000041
ORF3a93H93delCAC---11AY.610.000105
ORF3a93H93QcaCcaG11AY.620.000436
ORF3a93H93HcaCcaT11AY.650.000533
ORF3a93H93delCAC---11AY.680.000274
ORF3a93H93HcaCcaT11AY.70.000196
ORF3a93H93HcaCcaT11AY.710.000475
ORF3a93H93delCAC---11AY.730.000665
ORF3a93H93YCacTac11AY.740.000116
ORF3a93H93delCAC---11AY.740.000116
ORF3a93H93PcAccCc11AY.750.000056
ORF3a93H93delCAC---11AY.750.000056
ORF3a93H93YCacTac11AY.75.10.00018
ORF3a93H93RcAccGc11AY.790.001211
ORF3a93H93YCacTac11AY.80.000606
ORF3a93H93delCAC---11AY.9.20.000037
ORF3a93H93YCacTac11AY.930.000273
ORF3a93H93HcaCcaT11AY.930.000273
ORF3a93H93PcAccCc11AY.960.002075
ORF3a93H93HcaCcaT11AY.980.000079
ORF3a93H93YCacTac11AY.98.10.000048
ORF3a93H93delCAC---11AY.99.10.001553
ORF3a93H93YCacTac11B0.000128
ORF3a93H93delCAC---11B0.000128
ORF3a93H93NCacAac11B.10.000009
ORF3a93H93QcaCcaA11B.10.000009
ORF3a93H93RcAccGc11B.10.000009
ORF3a93H93CCACTGT11B.1.10.000018
ORF3a93H93delCAC---11B.1.10.000018
ORF3a93H93HcaCcaT11B.1.1.1370.0125
ORF3a93H93YCacTac11B.1.1.1760.000439
ORF3a93H93HcaCcaT11B.1.1.1860.003436
ORF3a93H93YCacTac11B.1.1.1920.002309
ORF3a93H93HcaCcaT11B.1.1.2070.001182
ORF3a93H93HcaCcaT11B.1.1.2200.001859
ORF3a93H93YCacTac11B.1.1.2220.000204
ORF3a93H93HcaCcaT11B.1.1.3060.000438
ORF3a93H93delCAC---11B.1.1.3150.008475
ORF3a93H93del1caCca-11B.1.1.3150.008475
ORF3a93H93YCacTac11B.1.1.3150.008475
ORF3a93H93HcaCcaT11B.1.1.3170.000412
ORF3a93H93HcaCcaT11B.1.1.3180.000302
ORF3a93H93YCacTac11B.1.1.3180.000302
ORF3a93H93QcaCcaG11B.1.1.330.000421
ORF3a93H93delCAC---11B.1.1.4090.002833
ORF3a93H93delCAC---11B.1.1.4200.001006
ORF3a93H93HcaCcaT11B.1.1.4340.000349
ORF3a93H93HcaCcaT11B.1.1.4850.016667
ORF3a93H93HcaCcaT11B.1.1.5280.004808
ORF3a93H93YCacTac11B.1.1.630.000386
ORF3a93H93del2cACc--11B.1.1.70.000001
ORF3a93H93ECaCGaG11B.1.1.70.000001
ORF3a93H93del1caCca-11B.1.1.70.000001
ORF3a93H93FCACTTT11B.1.1.70.000001
ORF3a93H93DCacGac11B.1.1.700.000341
ORF3a93H93del1CAC-NN11B.1.1.700.000341
ORF3a93H93delCAC---11B.1.1110.001175
ORF3a93H93YCacTac11B.1.1390.000733
ORF3a93H93delCAC---11B.1.1400.018868
ORF3a93H93NCacAac11B.1.1580.02381
ORF3a93H93HcaCcaT11B.1.1600.000031
ORF3a93H93HcaCcaT11B.1.1690.014925
ORF3a93H93RcAccGc11B.1.1770.000013
ORF3a93H93QcaCcaG11B.1.1770.000013
ORF3a93H93YCacTac11B.1.177.210.000076
ORF3a93H93HcaCcaT11B.1.177.330.001645
ORF3a93H93delCAC---11B.1.177.510.004566
ORF3a93H93HcaCcaT11B.1.177.60.000977
ORF3a93H93delCAC---11B.1.177.620.001192
ORF3a93H93YCacTac11B.1.177.730.000566
ORF3a93H93DCacGac11B.1.20.000009
ORF3a93H93HcaCcaT11B.1.2210.000071
ORF3a93H93YCacTac11B.1.2340.000132
ORF3a93H93delCAC---11B.1.2340.000132
ORF3a93H93YCacTac11B.1.2580.000067
ORF3a93H93HcaCcaT11B.1.2580.000067
ORF3a93H93YCacTac11B.1.2810.021739
ORF3a93H93HcaCcaT11B.1.3110.000275
ORF3a93H93YCacTac11B.1.3200.001245
ORF3a93H93YCacTac11B.1.3490.000715
ORF3a93H93HcaCcaT11B.1.351.20.000303
ORF3a93H93HcaCcaT11B.1.351.30.000876
ORF3a93H93NCacAac11B.1.360.000146
ORF3a93H93HcaCcaT11B.1.360.000146
ORF3a93H93delCAC---11B.1.3620.001541
ORF3a93H93YCacTac11B.1.3630.012987
ORF3a93H93HcaCcaT11B.1.3750.00082
ORF3a93H93NCacAac11B.1.3960.000706
ORF3a93H93del1caCca-11B.1.416.10.001563
ORF3a93H93HcaCcaT11B.1.438.10.000107
ORF3a93H93YCacTac11B.1.440.008333
ORF3a93H93HcaCcaT11B.1.5250.000113
ORF3a93H93QcaCcaA11B.1.5250.000113
ORF3a93H93TCAcACc11B.1.5260.000024
ORF3a93H93YCacTac11B.1.5410.004425
ORF3a93H93YCacTac11B.1.5580.004566
ORF3a93H93YCacTac11B.1.5640.000426
ORF3a93H93HcaCcaT11B.1.5750.000303
ORF3a93H93HcaCcaT11B.1.575.10.002439
ORF3a93H93HcaCcaT11B.1.5760.000907
ORF3a93H93HcaCcaT11B.1.5820.000491
ORF3a93H93HcaCcaT11B.1.5870.001898
ORF3a93H93YCacTac11B.1.5960.000087
ORF3a93H93NCacAac11B.1.5960.000087
ORF3a93H93DCacGac11B.1.5960.000087
ORF3a93H93HcaCcaT11B.1.6000.005848
ORF3a93H93YCacTac11B.1.617.10.000129
ORF3a93H93del1caCca-11B.1.617.10.000129
ORF3a93H93delCAC---11B.1.617.10.000129
ORF3a93H93LcAccTc11B.1.617.20.000004
ORF3a93H93DCacGac11B.1.6250.002353
ORF3a93H93PcAccCc11B.1.6280.000352
ORF3a93H93PcAccCc11B.1.6310.003367
ORF3a93H93delCAC---11B.1.6310.003367
ORF3a93H93YCacTac11B.1.6340.003425
ORF3a93H93HcaCcaT11B.1.6370.000073
ORF3a93H93delCAC---11B.1.6380.052632
ORF3a93H93YCacTac11B.1.80.001972
ORF3a93H93QcaCcaG11B.1.910.002075
ORF3a93H93HcaCcaT11B.110.005128
ORF3a93H93YCacTac11B.60.00091
ORF3a93H93YCacTac11C.230.005814
ORF3a93H93delCAC---11C.260.007353
ORF3a93H93YCacTac11C.36.30.000567
ORF3a93H93NCacAac11C.36.30.000567
ORF3a93H93PcAccCc11D.20.000075
ORF3a93H93LcAccTc11D.20.000075
ORF3a93H93HcaCcaT11D.20.000075
ORF3a93H93YCacTac11D.20.000075
ORF3a93H93RcAccGc11P.10.000016
ORF3a93H93PcAccCc11P.10.000016
ORF3a93H93NCacAac11P.10.000016
ORF3a93H93RcAccGc11P.1.100.000269
ORF3a93H93YCacTac11P.1.120.000484
ORF3a93H93HcaCcaT11P.1.120.000484
ORF3a93H93HcaCcaT11P.1.150.000232
ORF3a93H93PcAccCc11P.1.170.000162
ORF3a93H93YCacTac11P.20.000187
ORF3a93H93DCacGac11Q.10.000126
ORF3a93H93YCacTac11Q.10.000126
ORF3a93H93YCacTac11Q.30.000145
ORF3a93H93delCAC---11Q.40.000455
ORF3a93H93HcaCcaT11Q.80.000165
ORF3a93H93YCacTac11R.10.00009
ORF3a93H93delCAC---11U.30.003861
ORF3a93H93YCacTac11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.