CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 93 | H93Y | nonsyn | Cac | Tac | 5463 | 5460 | 0.999451 | 25669-25671 | |
ORF3a | 93 | H93Y | nonsyn | CaC | TaT | 5463 | 3 | 0.000549149 | 25669-25671 | |
ORF3a | 93 | H93H | syn | caC | caT | 1944 | 1944 | 1 | 25669-25671 | |
ORF3a | 93 | H93del | del | CAC | --- | 191 | 191 | 1 | 25669-25671 | |
ORF3a | 93 | H93N | nonsyn | Cac | Aac | 122 | 121 | 0.991803 | 25669-25671 | |
ORF3a | 93 | H93N | nonsyn | CaC | AaT | 122 | 1 | 0.00819672 | 25669-25671 | |
ORF3a | 93 | H93Q | nonsyn | caC | caA | 107 | 95 | 0.88785 | 25669-25671 | |
ORF3a | 93 | H93Q | nonsyn | caC | caG | 107 | 12 | 0.11215 | 25669-25671 | |
ORF3a | 93 | H93L | nonsyn | cAc | cTc | 42 | 38 | 0.904762 | 25669-25671 | |
ORF3a | 93 | H93L | nonsyn | cAC | cTT | 42 | 4 | 0.0952381 | 25669-25671 | |
ORF3a | 93 | H93R | nonsyn | cAc | cGc | 40 | 40 | 1 | 25669-25671 | |
ORF3a | 93 | H93D | nonsyn | Cac | Gac | 31 | 31 | 1 | 25669-25671 | |
ORF3a | 93 | H93P | nonsyn | cAc | cCc | 20 | 18 | 0.9 | 25669-25671 | |
ORF3a | 93 | H93P | nonsyn | cAC | cCG | 20 | 1 | 0.05 | 25669-25671 | |
ORF3a | 93 | H93P | nonsyn | cAC | cCT | 20 | 1 | 0.05 | 25669-25671 | |
ORF3a | 93 | H93del1 | del | Cac | -ac | 9 | 4 | 0.444444 | 25669-25671 | |
ORF3a | 93 | H93del1 | del | caC | ca- | 9 | 4 | 0.444444 | 25669-25671 | |
ORF3a | 93 | H93del1 | del | CAC | -NN | 9 | 1 | 0.111111 | 25669-25671 | |
ORF3a | 93 | H93F | nonsyn | CAc | TTc | 5 | 3 | 0.6 | 25669-25671 | |
ORF3a | 93 | H93F | nonsyn | CAC | TTT | 5 | 2 | 0.4 | 25669-25671 | |
ORF3a | 93 | H93del2 | del | CAC | --N | 3 | 2 | 0.666667 | 25669-25671 | |
ORF3a | 93 | H93del2 | del | cAC | c-- | 3 | 1 | 0.333333 | 25669-25671 | |
ORF3a | 93 | H93I | nonsyn | CAC | ATT | 2 | 1 | 0.5 | 25669-25671 | |
ORF3a | 93 | H93I | nonsyn | CAc | ATc | 2 | 1 | 0.5 | 25669-25671 | |
ORF3a | 93 | H93C | nonsyn | CAC | TGT | 1 | 1 | 1 | 25669-25671 | |
ORF3a | 93 | H93T | nonsyn | CAc | ACc | 1 | 1 | 1 | 25669-25671 | |
ORF3a | 93 | H93E | nonsyn | CaC | GaG | 1 | 1 | 1 | 25669-25671 | |
ORF3a | 93 | H93S | nonsyn | CAc | TCc | 1 | 1 | 1 | 25669-25671 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 93 | H93Y | Cac | Tac | 5460 | 5463 | All | 0.001044 |
ORF3a | 93 | H93Y | CaC | TaT | 3 | 5463 | All | 0.000001 |
ORF3a | 93 | H93H | caC | caT | 1944 | 1944 | All | 0.000372 |
ORF3a | 93 | H93Y | Cac | Tac | 1354 | 1354 | AY.47 | 0.042116 |
ORF3a | 93 | H93H | caC | caT | 529 | 529 | AY.4 | 0.000823 |
ORF3a | 93 | H93Y | Cac | Tac | 392 | 393 | AY.25 | 0.002358 |
ORF3a | 93 | H93Y | CaC | TaT | 1 | 393 | AY.25 | 0.000006 |
ORF3a | 93 | H93Y | Cac | Tac | 348 | 349 | B.1.1.7 | 0.000312 |
ORF3a | 93 | H93Y | CaC | TaT | 1 | 349 | B.1.1.7 | 0.000001 |
ORF3a | 93 | H93Y | Cac | Tac | 304 | 304 | AY.99.2 | 0.028016 |
ORF3a | 93 | H93Y | Cac | Tac | 303 | 303 | B.3.1 | 0.502488 |
ORF3a | 93 | H93Y | Cac | Tac | 293 | 293 | AY.120 | 0.010893 |
ORF3a | 93 | H93Y | Cac | Tac | 292 | 292 | AY.44 | 0.001777 |
ORF3a | 93 | H93Y | Cac | Tac | 283 | 283 | B.1.160 | 0.008826 |
ORF3a | 93 | H93Y | Cac | Tac | 279 | 279 | AY.4.2 | 0.006051 |
ORF3a | 93 | H93H | caC | caT | 256 | 256 | B.1.1.7 | 0.000229 |
ORF3a | 93 | H93H | caC | caT | 239 | 239 | AY.23.1 | 0.09975 |
ORF3a | 93 | H93del | CAC | --- | 191 | 191 | All | 0.000037 |
ORF3a | 93 | H93Y | Cac | Tac | 191 | 191 | B.1.617.2 | 0.000719 |
ORF3a | 93 | H93H | caC | caT | 153 | 153 | AY.110 | 0.017241 |
ORF3a | 93 | H93Y | Cac | Tac | 135 | 135 | AY.100 | 0.006211 |
ORF3a | 93 | H93N | Cac | Aac | 121 | 122 | All | 0.000023 |
ORF3a | 93 | H93N | CaC | AaT | 1 | 122 | All | 0 |
ORF3a | 93 | H93Y | Cac | Tac | 110 | 110 | B.1 | 0.001008 |
ORF3a | 93 | H93Q | caC | caA | 95 | 107 | All | 0.000018 |
ORF3a | 93 | H93Q | caC | caG | 12 | 107 | All | 0.000002 |
ORF3a | 93 | H93Y | Cac | Tac | 105 | 105 | B.1.351 | 0.003121 |
ORF3a | 93 | H93Y | Cac | Tac | 104 | 104 | AY.4 | 0.000162 |
ORF3a | 93 | H93H | caC | caT | 97 | 97 | B.1.429 | 0.002282 |
ORF3a | 93 | H93Y | Cac | Tac | 73 | 73 | B.1.2 | 0.000643 |
ORF3a | 93 | H93H | caC | caT | 70 | 70 | B.1.349 | 0.050036 |
ORF3a | 93 | H93Y | Cac | Tac | 62 | 62 | AY.103 | 0.000385 |
ORF3a | 93 | H93Y | Cac | Tac | 60 | 60 | AY.39 | 0.001483 |
ORF3a | 93 | H93Y | Cac | Tac | 53 | 53 | AY.43 | 0.000235 |
ORF3a | 93 | H93Y | Cac | Tac | 52 | 52 | B.1.429 | 0.001224 |
ORF3a | 93 | H93Y | Cac | Tac | 47 | 47 | B.1.177.16 | 0.031229 |
ORF3a | 93 | H93H | caC | caT | 45 | 45 | B.1.617.2 | 0.000169 |
ORF3a | 93 | H93L | cAc | cTc | 38 | 42 | All | 0.000007 |
ORF3a | 93 | H93L | cAC | cTT | 4 | 42 | All | 0.000001 |
ORF3a | 93 | H93R | cAc | cGc | 40 | 40 | All | 0.000008 |
ORF3a | 93 | H93H | caC | caT | 39 | 39 | AY.29 | 0.000615 |
ORF3a | 93 | H93Y | Cac | Tac | 39 | 39 | AY.3 | 0.000388 |
ORF3a | 93 | H93H | caC | caT | 39 | 39 | B.1.1.524 | 0.8125 |
ORF3a | 93 | H93Y | Cac | Tac | 35 | 35 | B.1.177 | 0.000461 |
ORF3a | 93 | H93Y | Cac | Tac | 35 | 35 | B.1.351.2 | 0.01059 |
ORF3a | 93 | H93del | CAC | --- | 34 | 34 | B.1.1.7 | 0.00003 |
ORF3a | 93 | H93N | Cac | Aac | 34 | 34 | B.1.617.2 | 0.000128 |
ORF3a | 93 | H93N | Cac | Aac | 32 | 32 | B.1.1.7 | 0.000029 |
ORF3a | 93 | H93D | Cac | Gac | 31 | 31 | All | 0.000006 |
ORF3a | 93 | H93del | CAC | --- | 31 | 31 | AY.103 | 0.000192 |
ORF3a | 93 | H93Y | Cac | Tac | 30 | 30 | AY.91 | 0.021914 |
ORF3a | 93 | H93Y | Cac | Tac | 30 | 30 | B.1.160.13 | 0.833333 |
ORF3a | 93 | H93Y | Cac | Tac | 29 | 29 | P.1.14 | 0.001386 |
ORF3a | 93 | H93Y | Cac | Tac | 24 | 24 | AY.102 | 0.000636 |
ORF3a | 93 | H93H | caC | caT | 24 | 24 | AY.43 | 0.000106 |
ORF3a | 93 | H93H | caC | caT | 22 | 22 | AY.103 | 0.000137 |
ORF3a | 93 | H93H | caC | caT | 22 | 22 | B.1 | 0.000202 |
ORF3a | 93 | H93Q | caC | caA | 21 | 21 | B.1.1.7 | 0.000019 |
ORF3a | 93 | H93H | caC | caT | 21 | 21 | B.1.526 | 0.000494 |
ORF3a | 93 | H93Y | Cac | Tac | 21 | 21 | P.1 | 0.000331 |
ORF3a | 93 | H93P | cAc | cCc | 18 | 20 | All | 0.000003 |
ORF3a | 93 | H93P | cAC | cCT | 1 | 20 | All | 0 |
ORF3a | 93 | H93P | cAC | cCG | 1 | 20 | All | 0 |
ORF3a | 93 | H93H | caC | caT | 20 | 20 | AY.44 | 0.000122 |
ORF3a | 93 | H93Y | Cac | Tac | 19 | 19 | B.1.1.358 | 0.655172 |
ORF3a | 93 | H93Y | Cac | Tac | 17 | 17 | AY.9.2 | 0.000624 |
ORF3a | 93 | H93H | caC | caT | 17 | 17 | B.1.2 | 0.00015 |
ORF3a | 93 | H93H | caC | caT | 16 | 16 | AY.25 | 0.000096 |
ORF3a | 93 | H93H | caC | caT | 14 | 14 | AY.3 | 0.000139 |
ORF3a | 93 | H93H | caC | caT | 14 | 14 | AY.39 | 0.000346 |
ORF3a | 93 | H93H | caC | caT | 14 | 14 | AY.7.1 | 0.001578 |
ORF3a | 93 | H93Q | caC | caA | 14 | 14 | B.1.429 | 0.000329 |
ORF3a | 93 | H93Q | caC | caA | 14 | 14 | B.1.617.2 | 0.000053 |
ORF3a | 93 | H93H | caC | caT | 13 | 13 | AY.29.1 | 0.002867 |
ORF3a | 93 | H93L | cAc | cTc | 13 | 13 | AY.44 | 0.000079 |
ORF3a | 93 | H93Y | Cac | Tac | 13 | 13 | AY.69 | 0.002427 |
ORF3a | 93 | H93H | caC | caT | 13 | 13 | B.1.427 | 0.000656 |
ORF3a | 93 | H93H | caC | caT | 12 | 12 | AY.42 | 0.000483 |
ORF3a | 93 | H93N | Cac | Aac | 12 | 12 | AY.43 | 0.000053 |
ORF3a | 93 | H93Y | Cac | Tac | 12 | 12 | B.1.1.519 | 0.000477 |
ORF3a | 93 | H93H | caC | caT | 12 | 12 | B.1.177 | 0.000158 |
ORF3a | 93 | H93Y | Cac | Tac | 12 | 12 | B.1.526 | 0.000282 |
ORF3a | 93 | H93del | CAC | --- | 11 | 11 | B.1 | 0.000101 |
ORF3a | 93 | H93Y | Cac | Tac | 10 | 10 | AY.13 | 0.00161 |
ORF3a | 93 | H93del | CAC | --- | 10 | 10 | B.1.177 | 0.000132 |
ORF3a | 93 | H93H | caC | caT | 10 | 10 | B.1.243 | 0.000696 |
ORF3a | 93 | H93H | caC | caT | 10 | 10 | P.1 | 0.000158 |
ORF3a | 93 | H93L | cAc | cTc | 10 | 10 | P.1 | 0.000158 |
ORF3a | 93 | H93del1 | caC | ca- | 4 | 9 | All | 0.000001 |
ORF3a | 93 | H93del1 | Cac | -ac | 4 | 9 | All | 0.000001 |
ORF3a | 93 | H93del1 | CAC | -NN | 1 | 9 | All | 0 |
ORF3a | 93 | H93H | caC | caT | 9 | 9 | AY.100 | 0.000414 |
ORF3a | 93 | H93H | caC | caT | 9 | 9 | AY.102 | 0.000239 |
ORF3a | 93 | H93Y | Cac | Tac | 9 | 9 | AY.118 | 0.000564 |
ORF3a | 93 | H93D | Cac | Gac | 9 | 9 | AY.4 | 0.000014 |
ORF3a | 93 | H93Q | caC | caA | 9 | 9 | AY.4 | 0.000014 |
ORF3a | 93 | H93Y | Cac | Tac | 9 | 9 | AY.46.4 | 0.001481 |
ORF3a | 93 | H93Y | Cac | Tac | 9 | 9 | B.1.1 | 0.000163 |
ORF3a | 93 | H93Y | Cac | Tac | 9 | 9 | B.1.1.33 | 0.003788 |
ORF3a | 93 | H93H | caC | caT | 9 | 9 | B.1.177.81 | 0.001704 |
ORF3a | 93 | H93Y | Cac | Tac | 9 | 9 | B.1.243 | 0.000626 |
ORF3a | 93 | H93del | CAC | --- | 8 | 8 | AY.4 | 0.000012 |
ORF3a | 93 | H93H | caC | caT | 8 | 8 | AY.5 | 0.000165 |
ORF3a | 93 | H93Y | Cac | Tac | 8 | 8 | AY.85 | 0.003417 |
ORF3a | 93 | H93Y | Cac | Tac | 7 | 7 | AY.117 | 0.000592 |
ORF3a | 93 | H93Y | Cac | Tac | 7 | 7 | AY.119 | 0.000247 |
ORF3a | 93 | H93H | caC | caT | 7 | 7 | AY.20 | 0.000272 |
ORF3a | 93 | H93R | cAc | cGc | 7 | 7 | AY.3 | 0.00007 |
ORF3a | 93 | H93Y | Cac | Tac | 7 | 7 | AY.45 | 0.000852 |
ORF3a | 93 | H93Y | Cac | Tac | 7 | 7 | AY.7.1 | 0.000789 |
ORF3a | 93 | H93H | caC | caT | 7 | 7 | B.1.258.17 | 0.000728 |
ORF3a | 93 | H93Y | Cac | Tac | 7 | 7 | B.1.399 | 0.01354 |
ORF3a | 93 | H93L | cAc | cTc | 5 | 6 | AY.25 | 0.00003 |
ORF3a | 93 | H93L | cAC | cTT | 1 | 6 | AY.25 | 0.000006 |
ORF3a | 93 | H93Y | Cac | Tac | 6 | 6 | AY.26 | 0.00017 |
ORF3a | 93 | H93H | caC | caT | 6 | 6 | AY.4.2 | 0.00013 |
ORF3a | 93 | H93Y | Cac | Tac | 6 | 6 | AY.5 | 0.000124 |
ORF3a | 93 | H93R | cAc | cGc | 6 | 6 | AY.9.1 | 0.000502 |
ORF3a | 93 | H93Y | Cac | Tac | 6 | 6 | AY.98 | 0.000474 |
ORF3a | 93 | H93H | caC | caT | 6 | 6 | AY.99.2 | 0.000553 |
ORF3a | 93 | H93Y | Cac | Tac | 6 | 6 | B.1.1.1 | 0.00196 |
ORF3a | 93 | H93Y | Cac | Tac | 6 | 6 | B.1.1.300 | 0.064516 |
ORF3a | 93 | H93H | caC | caT | 6 | 6 | B.1.1.519 | 0.000238 |
ORF3a | 93 | H93Y | Cac | Tac | 6 | 6 | B.3 | 0.004983 |
ORF3a | 93 | H93del | CAC | --- | 6 | 6 | P.1 | 0.000095 |
ORF3a | 93 | H93H | caC | caT | 6 | 6 | P.1.10 | 0.001617 |
ORF3a | 93 | H93H | caC | caT | 6 | 6 | P.1.14 | 0.000287 |
ORF3a | 93 | H93F | CAc | TTc | 3 | 5 | All | 0.000001 |
ORF3a | 93 | H93F | CAC | TTT | 2 | 5 | All | 0 |
ORF3a | 93 | H93H | caC | caT | 5 | 5 | AY.13 | 0.000805 |
ORF3a | 93 | H93Y | Cac | Tac | 5 | 5 | AY.23 | 0.000349 |
ORF3a | 93 | H93H | caC | caT | 5 | 5 | AY.33 | 0.000334 |
ORF3a | 93 | H93Y | Cac | Tac | 5 | 5 | AY.75 | 0.00028 |
ORF3a | 93 | H93Y | Cac | Tac | 5 | 5 | B.1.177.60 | 0.001092 |
ORF3a | 93 | H93H | caC | caT | 5 | 5 | B.1.351 | 0.000149 |
ORF3a | 93 | H93del | CAC | --- | 5 | 5 | B.1.525 | 0.000566 |
ORF3a | 93 | H93H | caC | caT | 5 | 5 | B.1.621 | 0.000443 |
ORF3a | 93 | H93del | CAC | --- | 5 | 5 | P.1.15 | 0.001162 |
ORF3a | 93 | H93Y | Cac | Tac | 5 | 5 | P.1.7 | 0.001596 |
ORF3a | 93 | H93Q | caC | caA | 4 | 4 | AY.103 | 0.000025 |
ORF3a | 93 | H93H | caC | caT | 4 | 4 | AY.113 | 0.00057 |
ORF3a | 93 | H93H | caC | caT | 4 | 4 | AY.119 | 0.000141 |
ORF3a | 93 | H93H | caC | caT | 4 | 4 | AY.120 | 0.000149 |
ORF3a | 93 | H93H | caC | caT | 4 | 4 | AY.23 | 0.000279 |
ORF3a | 93 | H93del | CAC | --- | 4 | 4 | AY.25 | 0.000024 |
ORF3a | 93 | H93F | CAc | TTc | 3 | 4 | AY.25 | 0.000018 |
ORF3a | 93 | H93F | CAC | TTT | 1 | 4 | AY.25 | 0.000006 |
ORF3a | 93 | H93Q | caC | caG | 3 | 4 | AY.4.5 | 0.000322 |
ORF3a | 93 | H93Q | caC | caA | 1 | 4 | AY.4.5 | 0.000107 |
ORF3a | 93 | H93H | caC | caT | 4 | 4 | B.1.1 | 0.000073 |
ORF3a | 93 | H93H | caC | caT | 4 | 4 | B.1.1.153 | 0.004381 |
ORF3a | 93 | H93Y | Cac | Tac | 4 | 4 | B.1.1.39 | 0.002039 |
ORF3a | 93 | H93L | cAc | cTc | 2 | 4 | B.1.1.7 | 0.000002 |
ORF3a | 93 | H93L | cAC | cTT | 2 | 4 | B.1.1.7 | 0.000002 |
ORF3a | 93 | H93N | Cac | Aac | 4 | 4 | B.1.160 | 0.000125 |
ORF3a | 93 | H93H | caC | caT | 4 | 4 | B.1.177.60 | 0.000874 |
ORF3a | 93 | H93Y | Cac | Tac | 4 | 4 | B.1.221 | 0.000284 |
ORF3a | 93 | H93Y | Cac | Tac | 3 | 4 | B.1.36 | 0.000438 |
ORF3a | 93 | H93Y | CaC | TaT | 1 | 4 | B.1.36 | 0.000146 |
ORF3a | 93 | H93Y | Cac | Tac | 4 | 4 | B.1.36.18 | 0.001681 |
ORF3a | 93 | H93H | caC | caT | 4 | 4 | C.16 | 0.004242 |
ORF3a | 93 | H93del2 | CAC | --N | 2 | 3 | All | 0 |
ORF3a | 93 | H93del2 | cAC | c-- | 1 | 3 | All | 0 |
ORF3a | 93 | H93N | Cac | Aac | 3 | 3 | AY.102 | 0.00008 |
ORF3a | 93 | H93Q | caC | caA | 3 | 3 | AY.102 | 0.00008 |
ORF3a | 93 | H93D | Cac | Gac | 3 | 3 | AY.103 | 0.000019 |
ORF3a | 93 | H93del | CAC | --- | 3 | 3 | AY.23 | 0.000209 |
ORF3a | 93 | H93P | cAc | cCc | 2 | 3 | AY.25 | 0.000012 |
ORF3a | 93 | H93P | cAC | cCT | 1 | 3 | AY.25 | 0.000006 |
ORF3a | 93 | H93N | Cac | Aac | 3 | 3 | AY.4 | 0.000005 |
ORF3a | 93 | H93R | cAc | cGc | 3 | 3 | AY.4 | 0.000005 |
ORF3a | 93 | H93del | CAC | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF3a | 93 | H93D | Cac | Gac | 3 | 3 | AY.42 | 0.000121 |
ORF3a | 93 | H93del | CAC | --- | 3 | 3 | AY.43 | 0.000013 |
ORF3a | 93 | H93del | CAC | --- | 3 | 3 | AY.44 | 0.000018 |
ORF3a | 93 | H93Q | caC | caA | 2 | 3 | AY.44 | 0.000012 |
ORF3a | 93 | H93Q | caC | caG | 1 | 3 | AY.44 | 0.000006 |
ORF3a | 93 | H93H | caC | caT | 3 | 3 | AY.46 | 0.000312 |
ORF3a | 93 | H93Y | Cac | Tac | 3 | 3 | AY.46 | 0.000312 |
ORF3a | 93 | H93H | caC | caT | 3 | 3 | AY.54 | 0.000286 |
ORF3a | 93 | H93Y | Cac | Tac | 3 | 3 | AY.54 | 0.000286 |
ORF3a | 93 | H93Y | Cac | Tac | 3 | 3 | AY.62 | 0.001307 |
ORF3a | 93 | H93Y | Cac | Tac | 3 | 3 | AY.67 | 0.001393 |
ORF3a | 93 | H93Y | Cac | Tac | 3 | 3 | AY.84 | 0.001312 |
ORF3a | 93 | H93H | caC | caT | 3 | 3 | AY.9 | 0.000203 |
ORF3a | 93 | H93Y | Cac | Tac | 3 | 3 | AY.92 | 0.000862 |
ORF3a | 93 | H93N | Cac | Aac | 3 | 3 | B.1.1 | 0.000054 |
ORF3a | 93 | H93Y | Cac | Tac | 3 | 3 | B.1.1.216 | 0.002671 |
ORF3a | 93 | H93H | caC | caT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF3a | 93 | H93Y | Cac | Tac | 3 | 3 | B.1.1.28 | 0.000934 |
ORF3a | 93 | H93D | Cac | Gac | 3 | 3 | B.1.1.7 | 0.000003 |
ORF3a | 93 | H93R | cAc | cGc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF3a | 93 | H93P | cAc | cCc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF3a | 93 | H93H | caC | caT | 3 | 3 | B.1.177.7 | 0.000495 |
ORF3a | 93 | H93N | Cac | Aac | 3 | 3 | B.1.2 | 0.000026 |
ORF3a | 93 | H93Q | caC | caA | 2 | 3 | B.1.2 | 0.000018 |
ORF3a | 93 | H93Q | caC | caG | 1 | 3 | B.1.2 | 0.000009 |
ORF3a | 93 | H93Y | Cac | Tac | 3 | 3 | B.1.280 | 0.021429 |
ORF3a | 93 | H93R | cAc | cGc | 3 | 3 | B.1.427 | 0.000151 |
ORF3a | 93 | H93Y | Cac | Tac | 3 | 3 | B.1.609 | 0.001438 |
ORF3a | 93 | H93del | CAC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF3a | 93 | H93del | CAC | --- | 3 | 3 | B.1.621 | 0.000266 |
ORF3a | 93 | H93del | CAC | --- | 3 | 3 | C.37 | 0.000348 |
ORF3a | 93 | H93Y | Cac | Tac | 3 | 3 | C.37 | 0.000348 |
ORF3a | 93 | H93Q | caC | caA | 2 | 3 | P.1 | 0.000032 |
ORF3a | 93 | H93Q | caC | caG | 1 | 3 | P.1 | 0.000016 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | A.2.5.2 | 0.003145 |
ORF3a | 93 | H93I | CAc | ATc | 1 | 2 | All | 0 |
ORF3a | 93 | H93I | CAC | ATT | 1 | 2 | All | 0 |
ORF3a | 93 | H93del | CAC | --- | 2 | 2 | AY.100 | 0.000092 |
ORF3a | 93 | H93R | cAc | cGc | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 93 | H93D | Cac | Gac | 2 | 2 | AY.109 | 0.001479 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | AY.110 | 0.000225 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | AY.113 | 0.000285 |
ORF3a | 93 | H93del | CAC | --- | 2 | 2 | AY.117 | 0.000169 |
ORF3a | 93 | H93Q | caC | caA | 2 | 2 | AY.120 | 0.000074 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | AY.120.1 | 0.000642 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | AY.14 | 0.000176 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | AY.20 | 0.000078 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | AY.24 | 0.000862 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | AY.27 | 0.000129 |
ORF3a | 93 | H93H | caC | caT | 2 | 2 | AY.27 | 0.000129 |
ORF3a | 93 | H93del | CAC | --- | 2 | 2 | AY.29 | 0.000032 |
ORF3a | 93 | H93H | caC | caT | 2 | 2 | AY.3.1 | 0.000171 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | AY.35 | 0.000466 |
ORF3a | 93 | H93H | caC | caT | 2 | 2 | AY.36 | 0.000296 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | AY.36 | 0.000296 |
ORF3a | 93 | H93Q | caC | caA | 2 | 2 | AY.39 | 0.000049 |
ORF3a | 93 | H93del1 | Cac | -ac | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 93 | H93H | caC | caT | 2 | 2 | AY.4.4 | 0.000818 |
ORF3a | 93 | H93H | caC | caT | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 93 | H93H | caC | caT | 2 | 2 | AY.41 | 0.000588 |
ORF3a | 93 | H93N | Cac | Aac | 2 | 2 | AY.44 | 0.000012 |
ORF3a | 93 | H93Q | caC | caA | 2 | 2 | AY.46.6 | 0.000144 |
ORF3a | 93 | H93H | caC | caT | 2 | 2 | AY.5.3 | 0.000675 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | AY.5.4 | 0.000553 |
ORF3a | 93 | H93H | caC | caT | 2 | 2 | AY.6 | 0.000082 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | AY.61 | 0.00021 |
ORF3a | 93 | H93H | caC | caT | 2 | 2 | AY.75 | 0.000112 |
ORF3a | 93 | H93Q | caC | caA | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 93 | H93N | Cac | Aac | 2 | 2 | AY.84 | 0.000875 |
ORF3a | 93 | H93H | caC | caT | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 93 | H93del1 | Cac | -ac | 2 | 2 | B.1 | 0.000018 |
ORF3a | 93 | H93N | Cac | Aac | 2 | 2 | B.1.1.214 | 0.000111 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | B.1.1.234 | 0.024096 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | B.1.1.284 | 0.000215 |
ORF3a | 93 | H93N | Cac | Aac | 2 | 2 | B.1.1.33 | 0.000842 |
ORF3a | 93 | H93P | cAc | cCc | 1 | 2 | B.1.1.33 | 0.000421 |
ORF3a | 93 | H93P | cAC | cCG | 1 | 2 | B.1.1.33 | 0.000421 |
ORF3a | 93 | H93Q | caC | caA | 2 | 2 | B.1.1.519 | 0.000079 |
ORF3a | 93 | H93del | CAC | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF3a | 93 | H93del | CAC | --- | 2 | 2 | B.1.177.35 | 0.001382 |
ORF3a | 93 | H93R | cAc | cGc | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 93 | H93H | caC | caT | 2 | 2 | B.1.234 | 0.000264 |
ORF3a | 93 | H93N | Cac | Aac | 2 | 2 | B.1.236 | 0.004107 |
ORF3a | 93 | H93H | caC | caT | 2 | 2 | B.1.241 | 0.001623 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | B.1.336 | 0.004878 |
ORF3a | 93 | H93del | CAC | --- | 2 | 2 | B.1.351.2 | 0.000605 |
ORF3a | 93 | H93Q | caC | caA | 2 | 2 | B.1.36 | 0.000292 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | B.1.36.29 | 0.001035 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | B.1.398 | 0.005952 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | B.1.409 | 0.001563 |
ORF3a | 93 | H93N | Cac | Aac | 1 | 2 | B.1.576 | 0.000907 |
ORF3a | 93 | H93I | CAC | ATT | 1 | 2 | B.1.576 | 0.000907 |
ORF3a | 93 | H93I | CAc | ATc | 1 | 2 | B.1.576 | 0.000907 |
ORF3a | 93 | H93N | CaC | AaT | 1 | 2 | B.1.576 | 0.000907 |
ORF3a | 93 | H93L | cAC | cTT | 1 | 2 | B.1.576 | 0.000907 |
ORF3a | 93 | H93L | cAc | cTc | 1 | 2 | B.1.576 | 0.000907 |
ORF3a | 93 | H93del | CAC | --- | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 93 | H93Q | caC | caA | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | B.1.610 | 0.007092 |
ORF3a | 93 | H93D | Cac | Gac | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 93 | H93P | cAc | cCc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 93 | H93N | Cac | Aac | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 93 | H93R | cAc | cGc | 2 | 2 | D.2 | 0.00015 |
ORF3a | 93 | H93D | Cac | Gac | 2 | 2 | P.1 | 0.000032 |
ORF3a | 93 | H93H | caC | caT | 2 | 2 | P.1.7 | 0.000639 |
ORF3a | 93 | H93H | caC | caT | 2 | 2 | P.3 | 0.00319 |
ORF3a | 93 | H93Y | Cac | Tac | 2 | 2 | Q.4 | 0.00091 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | A | 0.000387 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | A | 0.000387 |
ORF3a | 93 | H93Q | caC | caA | 1 | 1 | A.1 | 0.000282 |
ORF3a | 93 | H93R | cAc | cGc | 1 | 1 | A.2 | 0.000662 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | A.2.2 | 0.001689 |
ORF3a | 93 | H93P | cAc | cCc | 1 | 1 | A.2.4 | 0.003367 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | A.3 | 0.002096 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AE.8 | 0.000489 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AH.3 | 0.003802 |
ORF3a | 93 | H93C | CAC | TGT | 1 | 1 | All | 0 |
ORF3a | 93 | H93E | CaC | GaG | 1 | 1 | All | 0 |
ORF3a | 93 | H93T | CAc | ACc | 1 | 1 | All | 0 |
ORF3a | 93 | H93S | CAc | TCc | 1 | 1 | All | 0 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AV.1 | 0.005051 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.10 | 0.00053 |
ORF3a | 93 | H93Q | caC | caA | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 93 | H93R | cAc | cGc | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 93 | H93D | Cac | Gac | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 93 | H93R | cAc | cGc | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | AY.116.1 | 0.000311 |
ORF3a | 93 | H93N | Cac | Aac | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 93 | H93S | CAc | TCc | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 93 | H93N | Cac | Aac | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 93 | H93Q | caC | caG | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 93 | H93Q | caC | caA | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 93 | H93Q | caC | caA | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 93 | H93L | cAc | cTc | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 93 | H93R | cAc | cGc | 1 | 1 | AY.23.1 | 0.000417 |
ORF3a | 93 | H93del2 | CAC | --N | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 93 | H93R | cAc | cGc | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 93 | H93L | cAc | cTc | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 93 | H93Q | caC | caA | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 93 | H93Q | caC | caG | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 93 | H93N | Cac | Aac | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 93 | H93N | Cac | Aac | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 93 | H93P | cAc | cCc | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 93 | H93N | Cac | Aac | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 93 | H93L | cAc | cTc | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 93 | H93del2 | CAC | --N | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 93 | H93L | cAc | cTc | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 93 | H93L | cAc | cTc | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 93 | H93P | cAc | cCc | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 93 | H93R | cAc | cGc | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 93 | H93Q | caC | caA | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 93 | H93N | Cac | Aac | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 93 | H93Q | caC | caA | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 93 | H93D | Cac | Gac | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.5.1 | 0.003759 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.5.2 | 0.002463 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.52 | 0.000814 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 93 | H93N | Cac | Aac | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 93 | H93R | cAc | cGc | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 93 | H93Q | caC | caG | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | AY.7 | 0.000196 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | AY.71 | 0.000475 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.73 | 0.000665 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 93 | H93P | cAc | cCc | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 93 | H93R | cAc | cGc | 1 | 1 | AY.79 | 0.001211 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.8 | 0.000606 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.93 | 0.000273 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | AY.93 | 0.000273 |
ORF3a | 93 | H93P | cAc | cCc | 1 | 1 | AY.96 | 0.002075 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B | 0.000128 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | B | 0.000128 |
ORF3a | 93 | H93N | Cac | Aac | 1 | 1 | B.1 | 0.000009 |
ORF3a | 93 | H93Q | caC | caA | 1 | 1 | B.1 | 0.000009 |
ORF3a | 93 | H93R | cAc | cGc | 1 | 1 | B.1 | 0.000009 |
ORF3a | 93 | H93C | CAC | TGT | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.1.137 | 0.0125 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.1.176 | 0.000439 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.1.186 | 0.003436 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.1.192 | 0.002309 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF3a | 93 | H93del1 | caC | ca- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.1.315 | 0.008475 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 93 | H93Q | caC | caG | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.1.485 | 0.016667 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.1.528 | 0.004808 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.1.63 | 0.000386 |
ORF3a | 93 | H93del2 | cAC | c-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 93 | H93E | CaC | GaG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 93 | H93del1 | caC | ca- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 93 | H93F | CAC | TTT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 93 | H93D | Cac | Gac | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 93 | H93del1 | CAC | -NN | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | B.1.111 | 0.001175 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.139 | 0.000733 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF3a | 93 | H93N | Cac | Aac | 1 | 1 | B.1.158 | 0.02381 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.169 | 0.014925 |
ORF3a | 93 | H93R | cAc | cGc | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 93 | H93Q | caC | caG | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 93 | H93D | Cac | Gac | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.281 | 0.021739 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.311 | 0.000275 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.320 | 0.001245 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.349 | 0.000715 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF3a | 93 | H93N | Cac | Aac | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | B.1.362 | 0.001541 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.363 | 0.012987 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.375 | 0.00082 |
ORF3a | 93 | H93N | Cac | Aac | 1 | 1 | B.1.396 | 0.000706 |
ORF3a | 93 | H93del1 | caC | ca- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.44 | 0.008333 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 93 | H93Q | caC | caA | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 93 | H93T | CAc | ACc | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.541 | 0.004425 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.558 | 0.004566 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.564 | 0.000426 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.575 | 0.000303 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.575.1 | 0.002439 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.582 | 0.000491 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.587 | 0.001898 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 93 | H93N | Cac | Aac | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 93 | H93D | Cac | Gac | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.600 | 0.005848 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 93 | H93del1 | caC | ca- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 93 | H93L | cAc | cTc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 93 | H93D | Cac | Gac | 1 | 1 | B.1.625 | 0.002353 |
ORF3a | 93 | H93P | cAc | cCc | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 93 | H93P | cAc | cCc | 1 | 1 | B.1.631 | 0.003367 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | B.1.631 | 0.003367 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.634 | 0.003425 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.1.8 | 0.001972 |
ORF3a | 93 | H93Q | caC | caG | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | B.11 | 0.005128 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | B.6 | 0.00091 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | C.23 | 0.005814 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | C.26 | 0.007353 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 93 | H93N | Cac | Aac | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 93 | H93P | cAc | cCc | 1 | 1 | D.2 | 0.000075 |
ORF3a | 93 | H93L | cAc | cTc | 1 | 1 | D.2 | 0.000075 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | D.2 | 0.000075 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | D.2 | 0.000075 |
ORF3a | 93 | H93R | cAc | cGc | 1 | 1 | P.1 | 0.000016 |
ORF3a | 93 | H93P | cAc | cCc | 1 | 1 | P.1 | 0.000016 |
ORF3a | 93 | H93N | Cac | Aac | 1 | 1 | P.1 | 0.000016 |
ORF3a | 93 | H93R | cAc | cGc | 1 | 1 | P.1.10 | 0.000269 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 93 | H93P | cAc | cCc | 1 | 1 | P.1.17 | 0.000162 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | P.2 | 0.000187 |
ORF3a | 93 | H93D | Cac | Gac | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | Q.3 | 0.000145 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 93 | H93H | caC | caT | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | R.1 | 0.00009 |
ORF3a | 93 | H93del | CAC | --- | 1 | 1 | U.3 | 0.003861 |
ORF3a | 93 | H93Y | Cac | Tac | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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