CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 91

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a91Y91YsyntaCtaT68066806125663-25665
ORF3a91Y91HnonsynTacCac654654125663-25665
ORF3a91Y91deldelTAC---141141125663-25665
ORF3a91Y91CnonsyntActGc54530.98148125663-25665
ORF3a91Y91CnonsyntACtGT5410.018518525663-25665
ORF3a91Y91del1deltaCta-37310.83783825663-25665
ORF3a91Y91del1delTac-ac3760.16216225663-25665
ORF3a91Y91FnonsyntActTc22160.72727325663-25665
ORF3a91Y91FnonsyntACtTT2260.27272725663-25665
ORF3a91Y91DnonsynTacGac1818125663-25665
ORF3a91Y91NnonsynTacAac1616125663-25665
ORF3a91Y91SnonsyntActCc1212125663-25665
ORF3a91Y91XnonsyntaCtaA88125663-25665
ORF3a91Y91LnonsynTAcCTc530.625663-25665
ORF3a91Y91LnonsyntACtTA520.425663-25665
ORF3a91Y91InonsynTAcATc210.525663-25665
ORF3a91Y91InonsynTACATA210.525663-25665
ORF3a91Y91QnonsynTaCCaA11125663-25665
ORF3a91Y91del2delTAc--c11125663-25665
ORF3a91Y91TnonsynTACACT11125663-25665
ORF3a91Y91KnonsynTaCAaA11125663-25665

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a91Y91YtaCtaT68066806All0.001302
ORF3a91Y91YtaCtaT16201620AY.1180.101491
ORF3a91Y91YtaCtaT10511051AY.40.001636
ORF3a91Y91YtaCtaT720720B.1.1.70.000645
ORF3a91Y91HTacCac654654All0.000125
ORF3a91Y91HTacCac440440AY.40.000685
ORF3a91Y91YtaCtaT390390B.1.1770.005135
ORF3a91Y91YtaCtaT377377AY.440.002295
ORF3a91Y91YtaCtaT301301P.60.946541
ORF3a91Y91YtaCtaT244244B.10.002235
ORF3a91Y91YtaCtaT155155AY.430.000687
ORF3a91Y91YtaCtaT154154AY.250.000926
ORF3a91Y91delTAC---141141All0.000027
ORF3a91Y91YtaCtaT140140B.1.617.20.000527
ORF3a91Y91YtaCtaT129129B.1.20.001136
ORF3a91Y91YtaCtaT124124B.1.3690.035368
ORF3a91Y91YtaCtaT116116B.1.5320.720497
ORF3a91Y91YtaCtaT101101AY.1100.011382
ORF3a91Y91YtaCtaT8686AY.30.000855
ORF3a91Y91YtaCtaT6666AY.9.20.002424
ORF3a91Y91YtaCtaT6363AY.1030.000391
ORF3a91Y91HTacCac6363B.1.1.2620.954545
ORF3a91Y91YtaCtaT6363B.120.403846
ORF3a91Y91CtActGc5354All0.00001
ORF3a91Y91CtACtGT154All0
ORF3a91Y91YtaCtaT4747B.1.1030.903846
ORF3a91Y91HTacCac4343B.1.1.70.000038
ORF3a91Y91YtaCtaT4343P.10.000677
ORF3a91Y91YtaCtaT4040B.1.1600.001248
ORF3a91Y91YtaCtaT3838P.1.150.008829
ORF3a91Y91del1taCta-3137All0.000006
ORF3a91Y91del1Tac-ac637All0.000001
ORF3a91Y91YtaCtaT3737AY.980.002923
ORF3a91Y91YtaCtaT3737B.1.10.000671
ORF3a91Y91delTAC---3434B.1.1.70.00003
ORF3a91Y91YtaCtaT3232B.1.1.2140.001775
ORF3a91Y91YtaCtaT3131AY.46.20.019695
ORF3a91Y91del1taCta-3030AY.1030.000186
ORF3a91Y91YtaCtaT2828B.1.5610.011116
ORF3a91Y91YtaCtaT2323B.1.5260.000541
ORF3a91Y91FtActTc1622All0.000003
ORF3a91Y91FtACtTT622All0.000001
ORF3a91Y91YtaCtaT2121B.1.1.5190.000834
ORF3a91Y91DTacGac1818All0.000003
ORF3a91Y91YtaCtaT1818B.1.5960.001568
ORF3a91Y91YtaCtaT1717AY.120.10.005457
ORF3a91Y91YtaCtaT1717AY.470.000529
ORF3a91Y91NTacAac1616All0.000003
ORF3a91Y91YtaCtaT1616AY.50.00033
ORF3a91Y91YtaCtaT1616B.1.1.3370.057554
ORF3a91Y91YtaCtaT1515B.1.1.410.094937
ORF3a91Y91YtaCtaT1515C.370.001741
ORF3a91Y91HTacCac1414AY.250.000084
ORF3a91Y91CtActGc1313B.1.20.000114
ORF3a91Y91StActCc1212All0.000002
ORF3a91Y91DTacGac1212B.1.1.70.000011
ORF3a91Y91YtaCtaT1212B.1.3510.000357
ORF3a91Y91YtaCtaT1111AY.1020.000292
ORF3a91Y91delTAC---1111AY.40.000017
ORF3a91Y91YtaCtaT1111B.1.1.500.007468
ORF3a91Y91HTacCac1111B.1.617.20.000041
ORF3a91Y91YtaCtaT1111D.20.000825
ORF3a91Y91YtaCtaT1010AY.290.000158
ORF3a91Y91delTAC---1010B.1.1770.000132
ORF3a91Y91YtaCtaT99AY.1060.003014
ORF3a91Y91YtaCtaT99AY.260.000255
ORF3a91Y91StActCc99AY.40.000014
ORF3a91Y91YtaCtaT99B.1.1280.005718
ORF3a91Y91YtaCtaT99B.1.4270.000454
ORF3a91Y91YtaCtaT99B.1.4290.000212
ORF3a91Y91XtaCtaA88All0.000002
ORF3a91Y91FtACtTT48AY.250.000024
ORF3a91Y91FtActTc48AY.250.000024
ORF3a91Y91YtaCtaT88AY.390.000198
ORF3a91Y91YtaCtaT88AY.750.000448
ORF3a91Y91YtaCtaT77AY.1200.00026
ORF3a91Y91CtActGc77AY.30.00007
ORF3a91Y91YtaCtaT77AY.46.50.001389
ORF3a91Y91NTacAac77B.1.1.2570.067961
ORF3a91Y91YtaCtaT77B.230.020468
ORF3a91Y91YtaCtaT77C.36.30.003971
ORF3a91Y91YtaCtaT77R.10.00063
ORF3a91Y91YtaCtaT66A.30.012579
ORF3a91Y91HTacCac66AY.290.000095
ORF3a91Y91YtaCtaT66AY.4.20.00013
ORF3a91Y91CtActGc56B.1.1.70.000004
ORF3a91Y91CtACtGT16B.1.1.70.000001
ORF3a91Y91HTacCac66B.1.2580.000399
ORF3a91Y91YtaCtaT66B.1.36.360.003612
ORF3a91Y91delTAC---66B.1.5250.000679
ORF3a91Y91CtActGc66B.1.617.20.000023
ORF3a91Y91LTAcCTc35All0.000001
ORF3a91Y91LtACtTA25All0
ORF3a91Y91YtaCtaT55AY.1190.000177
ORF3a91Y91YtaCtaT55AY.230.000349
ORF3a91Y91HTacCac55AY.430.000022
ORF3a91Y91YtaCtaT55AY.46.60.000361
ORF3a91Y91delTAC---55B.10.000046
ORF3a91Y91YtaCtaT55B.1.1.10.001633
ORF3a91Y91HTacCac55B.1.1770.000066
ORF3a91Y91HTacCac55B.1.20.000044
ORF3a91Y91YtaCtaT55B.1.2210.000355
ORF3a91Y91YtaCtaT44AY.1090.002959
ORF3a91Y91YtaCtaT44AY.460.000416
ORF3a91Y91HTacCac44B.10.000037
ORF3a91Y91YtaCtaT44B.1.1.280.001245
ORF3a91Y91YtaCtaT44B.1.1.3980.012903
ORF3a91Y91FtACtTT24B.1.1.70.000002
ORF3a91Y91FtActTc24B.1.1.70.000002
ORF3a91Y91YtaCtaT44B.1.1460.016949
ORF3a91Y91YtaCtaT44B.1.2580.000266
ORF3a91Y91YtaCtaT44B.1.36.290.002069
ORF3a91Y91delTAC---44B.1.617.20.000015
ORF3a91Y91DTacGac44B.1.617.20.000015
ORF3a91Y91YtaCtaT44Q.30.00058
ORF3a91Y91YtaCtaT33AY.1000.000138
ORF3a91Y91HTacCac33AY.1030.000019
ORF3a91Y91YtaCtaT33AY.1130.000427
ORF3a91Y91YtaCtaT33AY.1160.00086
ORF3a91Y91YtaCtaT33AY.1210.000406
ORF3a91Y91YtaCtaT33AY.140.000264
ORF3a91Y91YtaCtaT33AY.200.000117
ORF3a91Y91delTAC---33AY.230.000209
ORF3a91Y91YtaCtaT33AY.240.001293
ORF3a91Y91delTAC---33AY.250.000018
ORF3a91Y91HTacCac33AY.260.000085
ORF3a91Y91HTacCac33AY.30.00003
ORF3a91Y91YtaCtaT33AY.4.2.10.000447
ORF3a91Y91delTAC---33AY.430.000013
ORF3a91Y91delTAC---33AY.440.000018
ORF3a91Y91YtaCtaT33AY.450.000365
ORF3a91Y91YtaCtaT33AY.46.10.00308
ORF3a91Y91HTacCac33AY.610.000314
ORF3a91Y91YtaCtaT33AY.780.004622
ORF3a91Y91LTAcCTc33B.10.000027
ORF3a91Y91HTacCac33B.1.10.000054
ORF3a91Y91YtaCtaT33B.1.1.2160.002671
ORF3a91Y91del1Tac-ac33B.1.1.70.000003
ORF3a91Y91YtaCtaT33B.1.177.160.001993
ORF3a91Y91YtaCtaT33B.1.177.870.002183
ORF3a91Y91YtaCtaT33B.1.5250.000339
ORF3a91Y91YtaCtaT33B.1.6210.000266
ORF3a91Y91YtaCtaT33B.1.6380.157895
ORF3a91Y91YtaCtaT33C.350.002322
ORF3a91Y91YtaCtaT33P.1.120.001452
ORF3a91Y91YtaCtaT33P.1.140.000143
ORF3a91Y91YtaCtaT33P.1.50.230769
ORF3a91Y91FtActTc220.111111
ORF3a91Y91HTacCac22A.2.5.10.009615
ORF3a91Y91ITACATA12All0
ORF3a91Y91ITAcATc12All0
ORF3a91Y91delTAC---22AY.1000.000092
ORF3a91Y91delTAC---22AY.1020.000053
ORF3a91Y91CtActGc22AY.1020.000053
ORF3a91Y91YtaCtaT22AY.1040.003968
ORF3a91Y91YtaCtaT22AY.1170.000169
ORF3a91Y91delTAC---22AY.1170.000169
ORF3a91Y91CtActGc22AY.120.10.000642
ORF3a91Y91YtaCtaT22AY.16.10.00094
ORF3a91Y91YtaCtaT22AY.210.003795
ORF3a91Y91delTAC---22AY.290.000032
ORF3a91Y91HTacCac22AY.330.000134
ORF3a91Y91HTacCac22AY.340.000194
ORF3a91Y91YtaCtaT22AY.370.000632
ORF3a91Y91YtaCtaT22AY.39.10.000079
ORF3a91Y91YtaCtaT22AY.4.50.000215
ORF3a91Y91delTAC---22AY.4.50.000215
ORF3a91Y91YtaCtaT22AY.400.001929
ORF3a91Y91YtaCtaT22AY.420.00008
ORF3a91Y91HTacCac22AY.420.00008
ORF3a91Y91YtaCtaT22AY.540.000191
ORF3a91Y91HTacCac22AY.9.20.000073
ORF3a91Y91CtActGc22B.1.10.000036
ORF3a91Y91YtaCtaT22B.1.1.1150.017857
ORF3a91Y91YtaCtaT22B.1.1.3600.0625
ORF3a91Y91YtaCtaT22B.1.1.4320.002532
ORF3a91Y91NTacAac22B.1.1.70.000002
ORF3a91Y91delTAC---22B.1.1600.000062
ORF3a91Y91CtActGc22B.1.1770.000026
ORF3a91Y91delTAC---22B.1.177.350.001382
ORF3a91Y91delTAC---22B.1.177.600.000437
ORF3a91Y91YtaCtaT22B.1.177.620.002384
ORF3a91Y91YtaCtaT22B.1.177.70.00033
ORF3a91Y91YtaCtaT22B.1.177.790.004684
ORF3a91Y91YtaCtaT22B.1.2390.002442
ORF3a91Y91YtaCtaT22B.1.2430.000139
ORF3a91Y91CtActGc22B.1.3510.000059
ORF3a91Y91delTAC---22B.1.351.20.000605
ORF3a91Y91YtaCtaT22B.1.360.000292
ORF3a91Y91YtaCtaT22B.1.4620.014493
ORF3a91Y91YtaCtaT22B.1.5750.000607
ORF3a91Y91ITAcATc12B.1.5760.000907
ORF3a91Y91ITACATA12B.1.5760.000907
ORF3a91Y91YtaCtaT22B.1.5950.000522
ORF3a91Y91delTAC---22B.1.5960.000174
ORF3a91Y91del1Tac-ac22B.1.617.20.000008
ORF3a91Y91HTacCac22B.1.6200.001892
ORF3a91Y91YtaCtaT22B.1.6270.00404
ORF3a91Y91YtaCtaT22B.1.6370.000146
ORF3a91Y91YtaCtaT22B.3.10.003317
ORF3a91Y91YtaCtaT22B.60.00182
ORF3a91Y91YtaCtaT22C.360.001821
ORF3a91Y91YtaCtaT22P.1.20.002312
ORF3a91Y91YtaCtaT22P.20.000373
ORF3a91Y91YtaCtaT110.055556
ORF3a91Y91delTAC---11A0.000387
ORF3a91Y91YtaCtaT11A.2.5.20.001572
ORF3a91Y91YtaCtaT11A.270.001656
ORF3a91Y91delTAC---11AH.30.003802
ORF3a91Y91TTACACT11All0
ORF3a91Y91QTaCCaA11All0
ORF3a91Y91del2TAc--c11All0
ORF3a91Y91KTaCAaA11All0
ORF3a91Y91delTAC---11AV.10.005051
ORF3a91Y91CtActGc11AY.1000.000046
ORF3a91Y91HTacCac11AY.1020.000027
ORF3a91Y91del1Tac-ac11AY.1020.000027
ORF3a91Y91delTAC---11AY.1030.000006
ORF3a91Y91FtActTc11AY.1030.000006
ORF3a91Y91CtActGc11AY.1030.000006
ORF3a91Y91CtActGc11AY.1070.000466
ORF3a91Y91delTAC---11AY.1110.000183
ORF3a91Y91delTAC---11AY.1130.000142
ORF3a91Y91YtaCtaT11AY.116.10.000311
ORF3a91Y91del2TAc--c11AY.1180.000063
ORF3a91Y91DTacGac11AY.1190.000035
ORF3a91Y91HTacCac11AY.1200.000037
ORF3a91Y91StActCc11AY.1200.000037
ORF3a91Y91YtaCtaT11AY.120.20.001285
ORF3a91Y91HTacCac11AY.1210.000135
ORF3a91Y91NTacAac11AY.200.000039
ORF3a91Y91QTaCCaA11AY.250.000006
ORF3a91Y91XtaCtaA11AY.250.000006
ORF3a91Y91FtActTc11AY.260.000028
ORF3a91Y91YtaCtaT11AY.270.000065
ORF3a91Y91HTacCac11AY.29.10.000221
ORF3a91Y91YtaCtaT11AY.29.10.000221
ORF3a91Y91LtACtTA11AY.30.00001
ORF3a91Y91XtaCtaA11AY.30.00001
ORF3a91Y91FtActTc11AY.30.00001
ORF3a91Y91YtaCtaT11AY.300.000396
ORF3a91Y91YtaCtaT11AY.330.000067
ORF3a91Y91delTAC---11AY.350.000233
ORF3a91Y91YtaCtaT11AY.360.000148
ORF3a91Y91HTacCac11AY.360.000148
ORF3a91Y91YtaCtaT11AY.380.000499
ORF3a91Y91HTacCac11AY.390.000025
ORF3a91Y91delTAC---11AY.390.000025
ORF3a91Y91YtaCtaT11AY.39.20.001541
ORF3a91Y91FtActTc11AY.40.000002
ORF3a91Y91DTacGac11AY.40.000002
ORF3a91Y91CtActGc11AY.40.000002
ORF3a91Y91delTAC---11AY.4.20.000022
ORF3a91Y91XtaCtaA11AY.4.50.000107
ORF3a91Y91YtaCtaT11AY.410.000294
ORF3a91Y91CtActGc11AY.430.000004
ORF3a91Y91StActCc11AY.430.000004
ORF3a91Y91XtaCtaA11AY.430.000004
ORF3a91Y91NTacAac11AY.440.000006
ORF3a91Y91HTacCac11AY.440.000006
ORF3a91Y91HTacCac11AY.450.000122
ORF3a91Y91HTacCac11AY.460.000104
ORF3a91Y91CtActGc11AY.460.000104
ORF3a91Y91delTAC---11AY.46.40.000165
ORF3a91Y91YtaCtaT11AY.46.40.000165
ORF3a91Y91HTacCac11AY.470.000031
ORF3a91Y91delTAC---11AY.470.000031
ORF3a91Y91YtaCtaT11AY.480.000465
ORF3a91Y91YtaCtaT11AY.5.30.000337
ORF3a91Y91YtaCtaT11AY.520.000814
ORF3a91Y91delTAC---11AY.520.000814
ORF3a91Y91delTAC---11AY.540.000095
ORF3a91Y91YtaCtaT11AY.550.000917
ORF3a91Y91delTAC---11AY.580.000907
ORF3a91Y91YtaCtaT11AY.60.000041
ORF3a91Y91NTacAac11AY.60.000041
ORF3a91Y91delTAC---11AY.610.000105
ORF3a91Y91YtaCtaT11AY.610.000105
ORF3a91Y91YtaCtaT11AY.620.000436
ORF3a91Y91YtaCtaT11AY.650.000533
ORF3a91Y91YtaCtaT11AY.670.000464
ORF3a91Y91YtaCtaT11AY.680.000274
ORF3a91Y91delTAC---11AY.730.000665
ORF3a91Y91YtaCtaT11AY.740.000116
ORF3a91Y91delTAC---11AY.740.000116
ORF3a91Y91delTAC---11AY.750.000056
ORF3a91Y91XtaCtaA11AY.850.000427
ORF3a91Y91CtActGc11AY.850.000427
ORF3a91Y91YtaCtaT11AY.870.000833
ORF3a91Y91delTAC---11AY.9.20.000037
ORF3a91Y91CtActGc11AY.910.00073
ORF3a91Y91YtaCtaT11AY.960.002075
ORF3a91Y91YtaCtaT11AY.970.001701
ORF3a91Y91HTacCac11AY.98.10.000048
ORF3a91Y91YtaCtaT11AY.98.10.000048
ORF3a91Y91delTAC---11AY.99.10.001553
ORF3a91Y91CtActGc11AY.99.20.000092
ORF3a91Y91YtaCtaT11AY.99.20.000092
ORF3a91Y91YtaCtaT11B0.000128
ORF3a91Y91delTAC---11B0.000128
ORF3a91Y91XtaCtaA11B.10.000009
ORF3a91Y91delTAC---11B.1.10.000018
ORF3a91Y91NTacAac11B.1.10.000018
ORF3a91Y91YtaCtaT11B.1.1.1570.000913
ORF3a91Y91YtaCtaT11B.1.1.1700.001247
ORF3a91Y91YtaCtaT11B.1.1.1740.003378
ORF3a91Y91XtaCtaA11B.1.1.1940.00495
ORF3a91Y91HTacCac11B.1.1.2140.000055
ORF3a91Y91YtaCtaT11B.1.1.2200.001859
ORF3a91Y91YtaCtaT11B.1.1.2220.000204
ORF3a91Y91NTacAac11B.1.1.250.000569
ORF3a91Y91YtaCtaT11B.1.1.2940.001266
ORF3a91Y91HTacCac11B.1.1.3070.002532
ORF3a91Y91del1taCta-11B.1.1.3150.008475
ORF3a91Y91YtaCtaT11B.1.1.330.000421
ORF3a91Y91delTAC---11B.1.1.4090.002833
ORF3a91Y91delTAC---11B.1.1.4200.001006
ORF3a91Y91delTAC---11B.1.1.700.000341
ORF3a91Y91delTAC---11B.1.1110.001175
ORF3a91Y91delTAC---11B.1.1400.018868
ORF3a91Y91CtActGc11B.1.1470.000756
ORF3a91Y91NTacAac11B.1.1600.000031
ORF3a91Y91HTacCac11B.1.1600.000031
ORF3a91Y91HTacCac11B.1.177.40.000211
ORF3a91Y91HTacCac11B.1.177.440.000519
ORF3a91Y91YtaCtaT11B.1.177.480.003125
ORF3a91Y91YtaCtaT11B.1.177.50.001242
ORF3a91Y91delTAC---11B.1.177.510.004566
ORF3a91Y91delTAC---11B.1.177.620.001192
ORF3a91Y91YtaCtaT11B.1.177.650.000665
ORF3a91Y91FtActTc11B.1.177.820.000477
ORF3a91Y91YtaCtaT11B.1.214.20.0006
ORF3a91Y91YtaCtaT11B.1.2190.009434
ORF3a91Y91delTAC---11B.1.2340.000132
ORF3a91Y91StActCc11B.1.2430.00007
ORF3a91Y91FtActTc11B.1.2580.000067
ORF3a91Y91YtaCtaT11B.1.258.170.000104
ORF3a91Y91HTacCac11B.1.2800.007143
ORF3a91Y91YtaCtaT11B.1.3110.000275
ORF3a91Y91CtActGc11B.1.3460.001311
ORF3a91Y91HTacCac11B.1.3490.000715
ORF3a91Y91YtaCtaT11B.1.36.180.00042
ORF3a91Y91YtaCtaT11B.1.36.80.001
ORF3a91Y91delTAC---11B.1.3620.001541
ORF3a91Y91YtaCtaT11B.1.3660.004878
ORF3a91Y91YtaCtaT11B.1.3890.001002
ORF3a91Y91HTacCac11B.1.438.10.000107
ORF3a91Y91YtaCtaT11B.1.4510.008197
ORF3a91Y91YtaCtaT11B.1.4650.003802
ORF3a91Y91YtaCtaT11B.1.4800.002488
ORF3a91Y91YtaCtaT11B.1.4990.00105
ORF3a91Y91YtaCtaT11B.1.5090.000866
ORF3a91Y91TTACACT11B.1.5260.000024
ORF3a91Y91YtaCtaT11B.1.5550.022222
ORF3a91Y91YtaCtaT11B.1.5640.000426
ORF3a91Y91XtaCtaA11B.1.5760.000907
ORF3a91Y91KTaCAaA11B.1.5760.000907
ORF3a91Y91FtActTc11B.1.5760.000907
ORF3a91Y91NTacAac11B.1.5760.000907
ORF3a91Y91LtACtTA11B.1.5760.000907
ORF3a91Y91YtaCtaT11B.1.5800.004065
ORF3a91Y91HTacCac11B.1.5960.000087
ORF3a91Y91YtaCtaT11B.1.6090.000479
ORF3a91Y91delTAC---11B.1.617.10.000129
ORF3a91Y91HTacCac11B.1.617.10.000129
ORF3a91Y91YtaCtaT11B.1.617.10.000129
ORF3a91Y91delTAC---11B.1.6210.000089
ORF3a91Y91YtaCtaT11B.1.6280.000352
ORF3a91Y91delTAC---11B.1.6310.003367
ORF3a91Y91delTAC---11B.1.6380.052632
ORF3a91Y91YtaCtaT11B.1.780.008547
ORF3a91Y91YtaCtaT11C.10.002392
ORF3a91Y91YtaCtaT11C.160.00106
ORF3a91Y91delTAC---11C.260.007353
ORF3a91Y91YtaCtaT11C.36.10.004149
ORF3a91Y91YtaCtaT11C.37.10.002618
ORF3a91Y91YtaCtaT11N.40.004255
ORF3a91Y91CtActGc11P.10.000016
ORF3a91Y91HTacCac11P.10.000016
ORF3a91Y91HTacCac11P.1.140.000048
ORF3a91Y91delTAC---11P.1.150.000232
ORF3a91Y91YtaCtaT11P.1.70.000319
ORF3a91Y91HTacCac11P.20.000187
ORF3a91Y91YtaCtaT11Q.10.000126
ORF3a91Y91HTacCac11Q.40.000455
ORF3a91Y91delTAC---11Q.40.000455
ORF3a91Y91FtActTc11Q.80.000165
ORF3a91Y91delTAC---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.